Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 2.0e-195 685.6 358 100.0
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 5.4e-193 677.6 358 98.9
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 1.4e-177 626.3 383 88.3
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 2.4e-169 599.0 359 89.1
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 1.9e-161 572.8 382 81.2
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 2.2e-138 496.1 424 67.2
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 9.1e-132 474.2 334 76.3
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 1.0e-130 470.7 364 73.1
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 3.8e-130 468.8 385 68.1
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 8.5e-130 467.6 379 67.3
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 1.4e-129 466.8 387 69.3
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 2.7e-128 462.6 320 76.6
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 2.7e-128 462.6 355 72.7
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 7.9e-128 461.1 367 69.5
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 1.0e-127 460.7 402 65.4
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 2.3e-127 459.5 355 71.8
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 3.9e-127 458.8 381 67.2
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 8.8e-127 457.6 406 66.7
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 3.3e-126 455.7 388 67.0
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 3.3e-126 455.7 292 81.2
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 1.7e-125 453.4 387 66.1
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 1.7e-125 453.4 352 70.5
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 1.7e-125 453.4 390 66.2
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 6.3e-125 451.4 384 65.1
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 1.1e-124 450.7 385 66.2
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 1.1e-124 450.7 273 84.6
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 2.4e-124 449.5 381 65.4
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 6.9e-124 448.0 369 67.8
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 9.1e-124 447.6 369 67.8
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 1.2e-123 447.2 278 83.5
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 2.6e-123 446.0 370 67.8
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 3.4e-123 445.7 370 67.8
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 5.9e-123 444.9 381 65.6
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 1.0e-122 444.1 377 65.0
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 1.0e-122 444.1 382 67.0
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 1.0e-122 444.1 370 67.3
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 1.7e-122 443.4 369 67.8
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 2.2e-122 443.0 377 65.0
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 3.8e-122 442.2 274 83.2
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 3.8e-122 442.2 296 78.0
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 8.5e-122 441.0 270 83.7
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 8.5e-122 441.0 270 83.7
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 1.1e-121 440.7 376 64.9
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 1.4e-121 440.3 357 67.5
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 1.4e-121 440.3 384 65.4
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 1.4e-121 440.3 390 64.1
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 1.9e-121 439.9 370 65.9
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 1.9e-121 439.9 409 61.4
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.5e-121 439.5 373 67.8
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 3.2e-121 439.1 290 79.3
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 7.2e-121 438.0 376 64.4
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 7.2e-121 438.0 276 82.2
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.6e-120 436.8 373 67.6
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 2.1e-120 436.4 380 65.8
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.1e-120 436.4 380 65.8
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 3.6e-120 435.6 279 80.3
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 4.7e-120 435.3 274 82.1
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 6.1e-120 434.9 281 79.4
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 1.4e-119 433.7 369 66.1
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 2.3e-119 433.0 399 63.2
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 3.0e-119 432.6 362 66.9
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 6.7e-119 431.4 381 62.7
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 6.7e-119 431.4 272 82.0
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 2.0e-118 429.9 384 62.5
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 2.6e-118 429.5 288 77.8
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 5.7e-118 428.3 368 63.9
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 1.7e-117 426.8 360 66.1
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 1.7e-117 426.8 389 66.3
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 2.2e-117 426.4 365 66.3
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 6.3e-117 424.9 368 65.2
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 1.1e-116 424.1 367 64.3
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 1.4e-116 423.7 376 65.4
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 1.4e-116 423.7 308 73.1
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 2.4e-116 422.9 259 83.8
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 9.1e-116 421.0 369 65.6
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 1.6e-115 420.2 286 76.9
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 2.6e-115 419.5 368 65.2
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 1.0e-114 417.5 286 76.9
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 1.1e-113 414.1 247 85.8
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 7.2e-113 411.4 362 64.4
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 2.7e-112 409.5 388 62.4
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 2.2e-109 399.8 329 68.4
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 2.2e-109 399.8 281 72.6
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 2.8e-109 399.4 268 76.5
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 8.2e-109 397.9 268 76.1
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 2.4e-108 396.4 371 60.9
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 2.4e-108 396.4 269 74.3
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 4.5e-107 392.1 345 65.8
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 1.3e-106 390.6 262 80.9
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 2.5e-105 386.3 279 71.7
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 4.2e-105 385.6 285 73.3
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 4.5e-99 365.5 290 70.7
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 1.0e-98 364.4 335 60.6
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 5.0e-98 362.1 410 52.9
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 8.6e-98 361.3 306 67.3
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 1.5e-97 360.5 269 69.9
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 3.3e-97 359.4 415 51.8
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 3.7e-93 345.9 268 67.5
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 1.6e-91 340.5 268 64.6
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.3e-90 337.4 206 83.0
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 8.6e-90 334.7 215 80.0
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 1.1e-89 334.3 344 57.8
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 8.0e-88 328.2 229 74.2
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 2.6e-86 323.2 323 61.3
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 3.7e-85 319.3 177 93.8
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 3.9e-82 309.3 297 62.0
Sabra06G0105200 Salix brachista HOM05D005749 ORTHO05D007208 1.5e-78 297.4 424 48.8
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 7.5e-78 295.0 271 56.5
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 1.4e-76 290.8 299 58.2
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 2.4e-76 290.0 263 57.0
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 1.5e-70 270.8 187 73.3
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 7.5e-70 268.5 291 54.0
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 7.5e-70 268.5 259 56.4
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 1.7e-66 257.3 157 84.7
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 4.7e-64 249.2 327 47.4
Phvul.007G161800 Phaseolus vulgaris HOM05D005749 ORTHO05D007208 8.9e-63 245.0 258 54.7
Cpa.g.sc114.34 Carica papaya HOM05D005749 ORTHO05D007208 2.3e-58 230.3 256 54.7
Actinidia19727 Actinidia chinensis HOM05D005749 ORTHO05D007208 2.8e-56 223.4 129 87.6
RcHm_v2.0_Chr2g0168111 Rosa chinensis HOM05D005749 ORTHO05D007208 1.4e-52 211.1 130 83.8
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 7.8e-51 205.3 136 77.2
Cpa.g.sc114.35 Carica papaya HOM05D005749 ORTHO05D007208 2.8e-48 196.8 123 85.4
Hma1.2p1_0111F.1_g053580 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 3.9e-42 176.4 108 79.6
PRCOL_00000418 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 9.0e-39 165.2 253 37.5
CDE09G0524 Ceratophyllum demersum HOM05D005749 ORTHO05D007208 8.4e-29 132.1 179 43.6
SEGI_12651 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 1.0e-26 125.2 86 80.2
CBR_g5606 Chara braunii HOM05D000019 ORTHO05D000002 8.7e-26 122.1 187 38.5
Lsat_1_v5_gn_1_79620 Lactuca sativa HOM05D005749 ORTHO05D007208 1.3e-24 118.2 90 68.9
Dinv03750 Davidia involucrata HOM05D005749 ORTHO05D007208 1.9e-12 77.8 41 97.6
Actinidia19728 Actinidia chinensis HOM05D005749 ORTHO05D007208 5.5e-12 76.3 150 39.3
Peaxi162Scf00146g01322 Petunia axillaris HOM05D005749 ORTHO05D007208 1.8e-10 71.2 66 65.2
MCO11G480 Micromonas commoda HOM05D005749 ORTHO05D007208 5.1e-10 69.7 268 23.9
Dinv06973 Davidia involucrata HOM05D005749 ORTHO05D007208 7.4e-09 65.9 36 88.9
CBR_g41620 Chara braunii HOM05D005749 ORTHO05D007208 4.1e-07 60.1 51 58.8


User provided reference genes

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