Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 0.0e+00 1328.5 674 100.0
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 0.0e+00 1224.5 678 91.4
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 0.0e+00 1152.1 678 86.3
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 0.0e+00 1143.3 674 85.0
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 1.3e-307 1059.3 695 77.8
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 6.0e-305 1050.4 696 77.6
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 9.6e-303 1043.1 683 78.2
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 1.2e-300 1036.2 672 78.4
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 4.5e-300 1034.2 1005 59.0
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 2.1e-297 1025.4 682 76.5
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 2.7e-297 1025.0 681 76.2
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 4.6e-297 1024.2 681 76.9
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 1.3e-294 1016.1 680 74.1
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 4.8e-294 1014.2 679 75.4
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 1.1e-293 1013.1 682 76.1
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 5.8e-292 1007.3 689 73.1
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 1.4e-290 1002.7 683 75.0
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 3.2e-290 1001.5 678 74.2
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 3.3e-287 991.5 680 74.1
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 1.8e-285 985.7 681 73.4
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 3.2e-282 974.9 681 72.4
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 2.7e-281 971.8 676 73.7
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 2.3e-280 968.8 680 72.5
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 3.3e-279 964.9 673 71.8
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 5.7e-279 964.1 730 69.9
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.1e-277 958.4 681 70.0
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 3.1e-277 958.4 681 70.0
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 4.1e-277 958.0 680 71.9
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 2.0e-276 955.7 669 71.7
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 2.0e-276 955.7 684 70.9
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 2.6e-276 955.3 678 72.0
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 2.2e-275 952.2 667 72.7
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 2.9e-275 951.8 709 70.4
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 1.4e-274 949.5 678 71.2
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 2.5e-274 948.7 680 72.4
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 5.5e-274 947.6 681 69.3
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 7.2e-274 947.2 686 71.1
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 7.2e-274 947.2 686 71.1
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 1.2e-268 929.9 675 71.0
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 1.5e-268 929.5 680 69.9
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 3.4e-268 928.3 676 69.8
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 1.3e-267 926.4 675 71.7
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 5.0e-267 924.5 673 70.9
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 4.2e-266 921.4 680 69.1
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 1.6e-265 919.5 680 68.2
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 2.1e-265 919.1 667 70.3
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 2.7e-265 918.7 678 69.5
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 6.1e-265 917.5 677 70.2
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 1.4e-264 916.4 675 68.7
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 2.3e-264 915.6 680 69.7
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.1e-263 913.3 653 71.2
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 2.0e-263 912.5 676 68.6
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 2.8e-262 908.7 692 68.5
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 4.8e-262 907.9 677 69.6
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 8.2e-262 907.1 678 69.2
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 1.1e-261 906.7 675 68.0
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 2.6e-260 902.1 635 73.4
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 5.9e-260 901.0 684 67.1
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 7.7e-260 900.6 675 68.3
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.4e-258 896.3 712 65.6
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 4.2e-258 894.8 684 68.7
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 4.2e-258 894.8 678 68.4
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 5.5e-258 894.4 680 66.8
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 4.7e-257 891.3 683 69.3
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 6.7e-256 887.5 658 67.3
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 8.8e-256 887.1 678 66.2
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 5.3e-253 877.9 677 68.2
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 5.5e-250 867.8 683 66.6
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 1.3e-246 856.7 674 65.4
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 2.8e-246 855.5 711 62.4
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 3.7e-246 855.1 711 62.4
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 5.9e-244 847.8 687 64.3
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 6.5e-243 844.3 685 65.5
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 4.2e-242 841.6 672 64.9
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 6.1e-241 837.8 686 63.8
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 1.8e-240 836.3 685 63.6
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 6.8e-240 834.3 681 63.9
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 8.8e-240 833.9 681 63.9
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 4.4e-239 831.6 681 63.6
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 1.7e-238 829.7 686 63.7
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 3.1e-237 825.5 688 63.1
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 4.1e-237 825.1 688 63.1
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 1.6e-236 823.2 685 63.4
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 6.1e-233 811.2 579 70.1
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 6.3e-230 801.2 674 59.9
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 1.4e-229 800.0 511 77.1
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 7.3e-226 787.7 682 61.6
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 7.3e-226 787.7 682 61.6
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 1.2e-225 786.9 690 61.7
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 8.0e-225 784.3 690 61.6
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 6.4e-222 774.6 713 59.9
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.6e-220 770.0 673 62.0
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 1.1e-213 747.3 452 80.1
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 9.2e-213 744.2 685 58.7
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 1.8e-208 729.9 705 54.5
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 2.3e-208 729.6 671 56.0
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 4.1e-205 718.8 822 50.9
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 3.0e-203 712.6 696 52.2
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 6.6e-203 711.4 511 70.8
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 8.9e-200 701.0 534 67.8
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 1.5e-199 700.3 672 54.3
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 2.4e-197 693.0 438 78.1
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 4.6e-196 688.7 673 57.5
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 1.2e-191 674.1 679 54.3
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 2.3e-179 633.3 419 70.4
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 9.3e-165 584.7 702 46.0
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 3.9e-163 579.3 527 56.4
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.7e-158 563.9 573 55.5
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 6.9e-152 542.0 554 56.3
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 1.8e-144 517.3 692 43.2
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 3.5e-135 486.5 711 39.8
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 7.0e-120 435.6 437 54.0
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 2.9e-118 430.3 535 43.4
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 6.5e-118 429.1 434 53.5
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 4.7e-116 422.9 406 60.6
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 1.1e-101 375.2 431 51.3
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 9.5e-101 372.1 299 63.5
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 2.9e-89 334.0 214 77.6
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 3.7e-89 333.6 613 35.7
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 1.9e-88 331.3 306 57.8
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 2.5e-85 320.9 371 50.7
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 3.1e-83 313.9 656 35.4
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 2.4e-75 287.7 358 51.1
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 3.4e-74 283.9 256 59.8
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 8.7e-70 269.2 254 61.8
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 1.6e-68 265.0 246 56.9
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.5e-66 258.5 266 54.1
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 1.1e-64 252.3 261 57.5
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 9.6e-61 239.2 259 56.0
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 8.1e-60 236.1 259 55.2
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 1.8e-59 235.0 141 82.3
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 2.9e-57 227.6 209 56.9
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 3.9e-54 217.2 130 80.8
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 2.9e-49 201.1 233 56.2
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 1.9e-48 198.4 107 86.0
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 2.4e-43 181.4 119 74.8
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 1.5e-42 178.7 117 71.8
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 1.2e-39 169.1 150 57.3
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 1.0e-38 166.0 102 77.5
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 3.0e-38 164.5 102 76.5
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 2.0e-37 161.8 207 48.3
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 5.7e-37 160.2 175 48.0
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 1.3e-36 159.1 120 67.5
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.8e-35 155.2 86 86.0
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.8e-35 155.2 86 86.0
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.8e-35 155.2 86 86.0
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 3.1e-35 154.5 107 67.3
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.2e-34 152.5 85 84.7
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 1.2e-34 152.5 230 40.9
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 5.0e-33 147.1 207 41.1
Hund24619 Selenicereus undatus HOM05D003729 ORTHO05D004384 1.1e-32 146.0 164 53.7
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 3.2e-32 144.4 103 71.8
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 1.8e-30 138.7 79 79.7
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 1.1e-29 136.0 106 61.3
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.3e-29 134.4 79 78.5
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 4.1e-27 127.5 70 78.6
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 9.4e-24 116.3 64 76.6
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 2.7e-23 114.8 107 57.9
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 9.7e-21 106.3 62 79.0
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 1.7e-20 105.5 97 55.7
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 4.8e-20 104.0 62 79.0
SHI51948 Sapria himalayana HOM05D003729 ORTHO05D004384 8.2e-20 103.2 183 42.6
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 1.1e-19 102.8 88 59.1
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 3.1e-19 101.3 69 69.6
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 3.5e-18 97.8 56 75.0
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 3.5e-18 97.8 57 70.2
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 7.7e-18 96.7 57 68.4
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 1.0e-17 96.3 55 70.9
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 2.2e-17 95.1 77 59.7
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 1.6e-15 89.0 127 41.7
FvH4_3g33711 Fragaria vesca HOM05D003729 ORTHO05D001837 8.0e-15 86.7 96 45.8
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 1.0e-14 86.3 50 80.0
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 1.0e-14 86.3 50 80.0
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 1.8e-14 85.5 62 69.4
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 2.3e-14 85.1 46 84.8
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 4.0e-14 84.3 46 82.6
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 8.8e-14 83.2 55 61.8
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 2.6e-13 81.6 54 68.5
Oeu029504.1 Olea europaea HOM05D003729 ORTHO05D004384 1.7e-12 79.0 97 55.7
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 1.7e-12 79.0 77 51.9
SHI50318 Sapria himalayana HOM05D003729 ORTHO05D004384 7.0e-11 73.6 185 36.2
SHI50413 Sapria himalayana HOM05D003729 ORTHO05D004384 1.6e-10 72.4 199 36.2
Sabra06G0025400 Salix brachista HOM05D003729 ORTHO05D004384 1.7e-09 68.9 152 31.6
SHI48244 Sapria himalayana HOM05D003729 ORTHO05D004384 5.0e-09 67.4 39 71.8
SHI44104 Sapria himalayana HOM05D003729 ORTHO05D004384 7.2e-08 63.5 241 32.0
SHI40171 Sapria himalayana HOM05D003729 ORTHO05D004384 1.2e-07 62.8 71 52.1
SHI54010 Sapria himalayana HOM05D003729 ORTHO05D004384 3.6e-07 61.2 34 82.4
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 1.4e-06 59.3 93 40.9
Medtr8g007590 Medicago truncatula HOM05D003729 ORTHO05D004384 5.2e-06 57.4 36 61.1
SHI51578 Sapria himalayana HOM05D003729 ORTHO05D004384 6.8e-06 57.0 32 81.2


User provided reference genes

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