Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 9.7e-107 390.2 202 100.0
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.8e-106 388.7 202 99.5
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 2.6e-99 365.5 202 93.6
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 7.5e-83 310.8 200 79.0
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 2.7e-80 302.4 194 77.3
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 7.0e-73 277.7 199 72.9
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 6.8e-68 261.2 199 66.8
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.4e-65 251.5 200 64.5
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.6e-62 241.5 200 61.5
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 1.1e-60 237.3 196 58.7
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 2.3e-60 236.1 192 59.9
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 6.8e-60 234.6 198 57.6
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.5e-59 233.4 193 61.7
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 2.9e-58 229.2 198 57.6
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 8.3e-58 227.6 198 57.1
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 8.3e-58 227.6 191 58.1
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 1.4e-57 226.9 195 57.4
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 1.4e-57 226.9 191 59.2
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 3.2e-57 225.7 198 57.1
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 5.4e-57 224.9 191 59.2
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 7.1e-57 224.6 191 56.5
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 7.1e-57 224.6 193 58.0
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 9.2e-57 224.2 190 56.8
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 2.7e-56 222.6 197 53.8
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.7e-56 222.6 197 54.8
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 4.6e-56 221.9 191 58.1
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.0e-56 221.5 193 58.0
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.0e-56 221.5 193 58.0
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 6.0e-56 221.5 191 57.1
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 7.8e-56 221.1 195 53.8
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.7e-55 219.9 192 56.2
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 5.1e-55 218.4 192 57.3
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 5.1e-55 218.4 189 56.6
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 5.1e-55 218.4 184 57.6
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 6.6e-55 218.0 188 55.3
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 6.6e-55 218.0 191 56.0
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 8.6e-55 217.6 191 58.1
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 8.6e-55 217.6 197 54.3
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 8.6e-55 217.6 191 54.5
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.1e-54 217.2 191 55.0
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 1.5e-54 216.9 192 54.2
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 1.9e-54 216.5 193 55.4
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 2.5e-54 216.1 186 56.5
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 4.3e-54 215.3 192 56.2
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 4.3e-54 215.3 198 56.1
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 5.6e-54 214.9 194 55.2
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 5.6e-54 214.9 191 56.0
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 5.6e-54 214.9 197 53.3
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 9.5e-54 214.2 192 54.2
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 1.2e-53 213.8 192 57.3
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.6e-53 213.4 193 52.3
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.6e-53 213.4 194 52.1
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 2.1e-53 213.0 197 53.3
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 3.6e-53 212.2 192 57.3
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.7e-53 211.8 192 52.1
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 6.2e-53 211.5 191 55.0
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 8.1e-53 211.1 187 55.6
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 8.1e-53 211.1 198 53.5
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 1.4e-52 210.3 187 56.7
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 1.8e-52 209.9 191 55.0
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 4.0e-52 208.8 197 52.8
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 4.0e-52 208.8 197 51.8
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 4.0e-52 208.8 194 56.2
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 5.2e-52 208.4 187 52.9
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 6.8e-52 208.0 197 55.3
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 1.5e-51 206.8 197 52.3
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.5e-51 206.8 192 51.0
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 2.0e-51 206.5 197 53.3
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.6e-51 206.1 192 54.2
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 2.6e-51 206.1 191 54.5
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.6e-51 206.1 192 49.5
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 3.4e-51 205.7 189 54.5
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 3.4e-51 205.7 164 64.6
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 4.4e-51 205.3 190 52.1
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 5.8e-51 204.9 187 54.5
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.3e-50 203.8 191 52.4
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 1.7e-50 203.4 191 50.8
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 2.2e-50 203.0 198 52.5
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 2.9e-50 202.6 197 52.3
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 2.9e-50 202.6 197 50.8
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 2.9e-50 202.6 197 52.3
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.9e-50 201.8 190 53.2
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 4.9e-50 201.8 197 52.8
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 8.3e-50 201.1 198 51.5
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.1e-49 200.7 197 52.3
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 1.1e-49 200.7 197 50.8
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.1e-49 200.7 191 55.0
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.4e-49 200.3 192 51.0
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.9e-49 199.9 174 56.3
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.9e-49 199.9 198 51.0
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 3.2e-49 199.1 186 52.2
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 3.2e-49 199.1 239 44.8
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 4.1e-49 198.7 190 53.2
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 4.1e-49 198.7 197 51.3
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 5.4e-49 198.4 192 52.6
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 6.0e-48 194.9 199 50.3
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 1.0e-47 194.1 185 56.2
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 1.3e-47 193.7 193 50.8
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 1.3e-47 193.7 185 55.7
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.3e-47 193.0 186 51.1
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 3.0e-47 192.6 187 55.6
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 6.6e-47 191.4 185 56.8
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 6.6e-47 191.4 187 55.6
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 6.6e-47 191.4 197 50.8
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 1.5e-46 190.3 186 48.9
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 1.9e-46 189.9 187 52.9
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 3.3e-46 189.1 186 50.5
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 3.3e-46 189.1 187 54.0
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 4.3e-46 188.7 197 48.7
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 5.6e-46 188.3 188 46.8
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 9.6e-46 187.6 185 54.6
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.2e-45 187.2 197 48.2
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.2e-45 187.2 191 50.8
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 2.1e-45 186.4 187 50.8
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 2.8e-45 186.0 143 62.2
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 3.6e-45 185.7 190 50.5
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 3.6e-45 185.7 196 50.0
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 1.1e-44 184.1 178 52.8
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 1.4e-44 183.7 186 54.3
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.8e-44 183.3 188 47.3
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 4.0e-44 182.2 188 50.5
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 5.2e-44 181.8 179 50.8
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 5.2e-44 181.8 184 48.4
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 5.2e-44 181.8 188 46.8
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 5.2e-44 181.8 194 50.0
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 6.8e-44 181.4 188 46.3
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 8.9e-44 181.0 188 46.8
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.2e-43 180.6 201 49.8
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 1.5e-43 180.3 188 45.7
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 1.5e-43 180.3 172 54.7
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 3.4e-43 179.1 173 52.6
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.4e-43 178.7 195 49.7
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.7e-42 176.8 142 61.3
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 2.2e-42 176.4 184 46.2
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 3.8e-42 175.6 156 54.5
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 6.4e-42 174.9 187 45.5
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.2e-41 172.6 191 47.6
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 7.1e-41 171.4 193 47.2
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 2.1e-40 169.9 191 47.1
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 3.5e-40 169.1 197 46.7
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.7e-39 166.8 142 54.9
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 2.8e-37 159.5 188 42.6
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 4.8e-37 158.7 191 42.9
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 1.4e-36 157.1 193 44.0
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 1.8e-36 156.8 192 42.2
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.9e-36 154.8 125 59.2
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 6.9e-36 154.8 162 48.8
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 9.0e-36 154.5 161 53.4
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 3.4e-35 152.5 191 40.8
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.8e-35 151.8 197 43.1
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 7.6e-35 151.4 197 42.6
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.7e-34 150.2 130 53.8
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 5.4e-33 145.2 196 41.3
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 9.3e-33 144.4 166 47.6
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.2e-32 144.1 196 43.9
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 1.2e-32 144.1 196 41.3
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 3.5e-32 142.5 141 46.8
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 7.8e-32 141.4 198 40.9
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 8.7e-31 137.9 127 52.0
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 9.6e-30 134.4 145 46.9
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 2.4e-28 129.8 196 38.8
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 6.9e-28 128.3 194 43.8
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 1.9e-25 120.2 113 50.4
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.1e-24 116.7 153 40.5
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 7.9e-24 114.8 96 55.2
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 2.1e-21 106.7 86 64.0
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.3e-18 97.4 166 36.1
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 4.2e-17 92.4 108 47.2
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.8e-15 87.0 192 29.7
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 3.3e-14 82.8 209 27.3
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 2.1e-13 80.1 200 27.0
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.8e-12 77.0 76 51.3
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.1e-12 75.9 105 41.0
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 9.0e-12 74.7 158 34.2
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.6e-11 73.2 185 31.9
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 1.3e-10 70.9 176 27.8
Solyc04g040020.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 8.7e-07 58.2 49 59.2
Nitab4.5_0002521g0060 Nicotiana tabacum HOM05D015872 ORTHO05D284606 7.4e-06 55.1 40 67.5


User provided reference genes

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