Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 8.9e-90 333.6 166 100.0
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 4.4e-89 331.3 166 99.4
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 1.3e-85 319.7 166 95.8
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.6e-75 286.2 165 85.5
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 2.1e-75 285.8 165 85.5
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 1.7e-72 276.2 165 82.4
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 4.0e-66 255.0 175 73.7
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 3.7e-64 248.4 162 72.2
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 4.1e-63 245.0 165 71.5
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 1.6e-62 243.0 162 71.0
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 3.5e-62 241.9 163 71.2
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 1.3e-61 240.0 162 70.4
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 2.3e-61 239.2 162 71.0
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 3.0e-61 238.8 163 66.9
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 5.1e-61 238.0 162 69.8
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 8.6e-61 237.3 162 68.5
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 8.6e-61 237.3 165 70.3
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 1.1e-60 236.9 163 69.9
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 1.1e-60 236.9 163 69.9
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 2.5e-60 235.7 163 69.9
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 2.5e-60 235.7 163 69.9
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 6.2e-59 231.1 163 68.1
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 1.1e-58 230.3 163 69.3
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 6.8e-58 227.6 162 66.7
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 8.9e-58 227.3 162 66.7
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 2.0e-57 226.1 163 68.1
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 2.6e-57 225.7 163 68.1
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 4.4e-57 224.9 164 66.5
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 7.6e-57 224.2 163 66.3
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 7.6e-57 224.2 162 66.0
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 9.9e-57 223.8 163 66.3
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 1.1e-55 220.3 162 63.6
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 1.9e-55 219.5 163 63.2
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 2.4e-55 219.2 163 64.4
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 4.2e-55 218.4 198 54.0
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 5.4e-55 218.0 163 65.0
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 9.3e-55 217.2 163 65.0
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 9.3e-55 217.2 163 65.0
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 3.5e-54 215.3 154 68.2
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 3.5e-54 215.3 154 68.2
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 3.5e-54 215.3 162 63.0
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 4.6e-54 214.9 163 63.2
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 4.6e-54 214.9 161 65.8
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 1.3e-53 213.4 163 63.8
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 3.9e-53 211.8 163 62.0
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 1.5e-52 209.9 164 62.2
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 3.3e-52 208.8 154 65.6
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 4.3e-52 208.4 164 63.4
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 2.8e-51 205.7 154 64.3
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 8.1e-51 204.1 150 64.7
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 8.1e-51 204.1 163 60.1
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 2.4e-50 202.6 175 59.4
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 3.1e-50 202.2 166 60.8
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 4.4e-49 198.4 164 61.0
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 7.6e-49 197.6 163 59.5
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 7.6e-49 197.6 162 59.9
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 7.6e-49 197.6 162 62.3
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 9.9e-49 197.2 163 58.3
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 1.3e-48 196.8 162 59.9
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 6.4e-48 194.5 163 58.3
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 8.4e-48 194.1 164 61.0
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 1.1e-47 193.7 162 56.8
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 2.4e-47 192.6 164 56.1
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 7.1e-47 191.0 164 56.7
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 7.1e-47 191.0 164 59.1
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 2.1e-46 189.5 163 58.9
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 3.5e-46 188.7 164 55.5
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 7.8e-46 187.6 162 58.0
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 7.8e-46 187.6 164 56.7
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 1.0e-45 187.2 154 59.1
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 2.3e-45 186.0 162 59.3
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 3.9e-45 185.3 123 70.7
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 5.1e-45 184.9 164 57.9
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 1.5e-44 183.3 162 55.6
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 1.9e-44 183.0 162 56.2
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 1.9e-44 183.0 162 56.2
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 1.9e-44 183.0 162 56.2
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 2.5e-44 182.6 163 57.1
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 2.5e-44 182.6 162 56.2
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 2.5e-44 182.6 162 56.2
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 4.3e-44 181.8 162 56.2
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 7.3e-44 181.0 162 56.8
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 7.3e-44 181.0 162 54.3
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 9.6e-44 180.6 161 58.4
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 3.6e-43 178.7 163 55.2
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 3.6e-43 178.7 163 55.2
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 6.2e-43 177.9 162 54.9
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 1.8e-42 176.4 162 54.3
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 2.6e-41 172.6 165 54.5
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 2.6e-41 172.6 165 54.5
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 2.6e-41 172.6 165 54.5
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 2.2e-40 169.5 124 66.1
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 2.9e-40 169.1 165 54.5
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 8.4e-40 167.5 168 51.8
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 5.4e-39 164.9 152 57.9
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 3.9e-37 158.7 113 66.4
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 1.6e-35 153.3 165 46.1
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 5.3e-34 148.3 164 50.6
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 2.6e-33 146.0 179 44.7
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.7e-32 143.3 162 43.2
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 2.9e-32 142.5 179 44.7
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 9.6e-28 127.5 165 44.2
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-26 124.0 173 39.3
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-25 120.6 177 42.4
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 5.8e-25 118.2 177 42.9
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 5.5e-23 111.7 128 50.0
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 4.6e-22 108.6 175 37.1
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 2.3e-21 106.3 101 50.5
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 3.0e-21 105.9 165 41.8
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 8.7e-21 104.4 114 49.1
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-20 103.6 177 35.0
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-19 100.1 185 36.2
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 2.2e-19 99.8 70 70.0
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 6.3e-19 98.2 175 38.9
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 8.2e-19 97.8 178 31.5
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 1.8e-18 96.7 159 35.8
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 5.3e-18 95.1 164 32.3
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 6.9e-18 94.7 68 61.8
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 9.0e-18 94.4 170 35.3
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-17 93.6 165 33.9
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 1.3e-16 90.5 144 35.4
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 2.9e-16 89.4 75 58.7
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-16 89.0 136 39.0
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-15 87.4 174 32.2
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 1.4e-15 87.0 108 49.1
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 1.9e-15 86.7 71 62.0
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 1.0e-13 80.9 126 38.1
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 3.0e-13 79.3 153 28.8
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 3.9e-13 79.0 109 39.4
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 6.7e-13 78.2 156 34.0
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 2.5e-12 76.3 176 31.8
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 3.3e-12 75.9 172 26.2
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 7.4e-12 74.7 164 27.4
Atru.chr4.1970 Acer truncatum HOM05D004737 ORTHO05D005623 2.2e-11 73.2 172 26.2
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 4.8e-11 72.0 181 29.3
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 6.3e-11 71.6 136 30.9
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-10 70.9 177 31.1
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-10 70.9 146 32.2
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-09 67.4 111 39.6
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 2.0e-09 66.6 113 37.2
Atru.chr1.4012 Acer truncatum HOM05D004737 ORTHO05D005623 4.5e-09 65.5 145 29.7
Atru.chr5.3478 Acer truncatum HOM05D004737 ORTHO05D005623 7.7e-09 64.7 126 31.7
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 2.9e-08 62.8 39 71.8
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 3.8e-08 62.4 132 29.5
Atru.chr12.1688 Acer truncatum HOM05D004737 ORTHO05D005623 2.5e-07 59.7 131 29.0
Atru.chr12.1697 Acer truncatum HOM05D004737 ORTHO05D005623 4.7e-06 55.5 158 24.7
Atru.chr6.94 Acer truncatum HOM05D004737 ORTHO05D005623 6.1e-06 55.1 64 48.4


User provided reference genes

Program Settings