Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g026900 Solanum pennellii HOM05D003114 ORTHO05D003519 1.3e-41 172.6 84 100.0
Sopen10g025670 Solanum pennellii HOM05D003114 ORTHO05D003519 1.9e-24 115.5 59 89.8
Solyc12g088990.2 Solanum lycopersicum HOM05D003114 ORTHO05D003519 1.8e-22 109.0 54 94.4
Sopen12g030890 Solanum pennellii HOM05D003114 ORTHO05D003519 1.8e-22 109.0 54 94.4
PGSC0003DMG402015451 Solanum tuberosum HOM05D003114 ORTHO05D003519 1.8e-22 109.0 54 94.4
CAN.G1002.6 Capsicum annuum HOM05D003114 ORTHO05D003519 1.5e-21 105.9 54 92.6
Peaxi162Scf00064g00323 Petunia axillaris HOM05D003114 ORTHO05D003519 1.3e-20 102.8 54 87.0
CDE07G1354 Ceratophyllum demersum HOM05D003114 ORTHO05D003519 4.9e-20 100.9 54 81.5
PSO541G3592 Papaver somniferum HOM05D003114 ORTHO05D003519 1.1e-19 99.8 54 83.3
PSO675G2900 Papaver somniferum HOM05D003114 ORTHO05D003519 1.1e-19 99.8 54 83.3
Nitab4.5_0002940g0050 Nicotiana tabacum HOM05D003114 ORTHO05D003519 1.4e-19 99.4 54 83.3
Nitab4.5_0008571g0020 Nicotiana tabacum HOM05D003114 ORTHO05D003519 1.4e-19 99.4 54 83.3
Prupe.1G385700 Prunus persica HOM05D003114 ORTHO05D003519 1.4e-19 99.4 54 81.5
Sopen07g012830 Solanum pennellii HOM05D003114 ORTHO05D003519 1.9e-19 99.0 54 83.3
MELO3C003892.2 Cucumis melo HOM05D003114 ORTHO05D003519 2.4e-19 98.6 54 81.5
CsaV3_3G044820 Cucumis sativus L. HOM05D003114 ORTHO05D003519 2.4e-19 98.6 54 81.5
ECA247G0467 Erigeron canadensis HOM05D003114 ORTHO05D003519 2.4e-19 98.6 54 83.3
Lsat_1_v5_gn_1_19460 Lactuca sativa HOM05D003114 ORTHO05D003519 2.4e-19 98.6 54 83.3
Sed0016520 Sechium edule HOM05D003114 ORTHO05D003519 2.4e-19 98.6 54 81.5
Aqoxy6G00963 Aquilegia oxysepala HOM05D003114 ORTHO05D003519 3.2e-19 98.2 65 69.2
TAR381G0473 Trochodendron aralioides HOM05D003114 ORTHO05D003519 3.2e-19 98.2 54 81.5
MBI16_g36197_MAGBIO Magnolia biondii HOM05D003114 ORTHO05D003519 4.1e-19 97.8 54 79.6
HanXRQChr02g0045841 Helianthus annuus HOM05D003114 ORTHO05D003519 5.4e-19 97.4 54 81.5
Phvul.001G017700 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 5.4e-19 97.4 54 77.8
VMungo0647G1221 Vigna mungo HOM05D003114 ORTHO05D003519 5.4e-19 97.4 54 77.8
Aqoxy5G01744 Aquilegia oxysepala HOM05D003114 ORTHO05D003519 9.2e-19 96.7 54 79.6
Ah.02g115940 Amaranthus hybridus HOM05D003114 ORTHO05D003519 1.2e-18 96.3 54 79.6
EL10Ac5g11704 Beta vulgaris HOM05D003114 ORTHO05D003519 1.2e-18 96.3 54 79.6
Manes.18G031300 Manihot esculenta HOM05D003114 ORTHO05D003519 1.2e-18 96.3 54 79.6
Potri.014G039100 Populus trichocarpa HOM05D003114 ORTHO05D003519 1.2e-18 96.3 54 79.6
Sc07g0007470 Simmondsia chinensis HOM05D003114 ORTHO05D003519 1.2e-18 96.3 54 79.6
TWI12G1412 Tripterygium wilfordii HOM05D003114 ORTHO05D003519 1.2e-18 96.3 54 79.6
TWI36G0061 Tripterygium wilfordii HOM05D003114 ORTHO05D003519 1.2e-18 96.3 54 79.6
Nn6g32174 Nelumbo nucifera HOM05D003114 ORTHO05D003519 1.6e-18 95.9 58 72.4
DCAR_019495 Daucus carota HOM05D003114 ORTHO05D003519 2.1e-18 95.5 54 79.6
DCAR_020951 Daucus carota HOM05D003114 ORTHO05D003519 2.1e-18 95.5 54 79.6
Sp1g34560 Schrenkiella parvula HOM05D003114 ORTHO05D003519 2.1e-18 95.5 54 75.9
Aa31sc119G20 Aethionema arabicum HOM05D003114 ORTHO05D003519 2.7e-18 95.1 54 75.9
AT1G47550 Arabidopsis thaliana HOM05D003114 ORTHO05D003519 2.7e-18 95.1 54 75.9
BcaB07g33828 Brassica carinata HOM05D003114 ORTHO05D003519 2.7e-18 95.1 54 75.9
Carub.0001s3632 Capsella rubella HOM05D003114 ORTHO05D003519 2.7e-18 95.1 54 75.9
Cfa018458 Carpinus fangiana HOM05D003114 ORTHO05D003519 2.7e-18 95.1 54 77.8
Ciclev10000230m.g Citrus clementina HOM05D003114 ORTHO05D003519 2.7e-18 95.1 54 77.8
Thhalv10011225m.g Eutrema salsugineum HOM05D003114 ORTHO05D003519 2.7e-18 95.1 54 75.9
Lalb_Chr14g0368971 Lupinus albus HOM05D003114 ORTHO05D003519 2.7e-18 95.1 54 75.9
Nitab4.5_0000790g0060 Nicotiana tabacum HOM05D003114 ORTHO05D003519 2.7e-18 95.1 70 70.0
Sabra02G0103300 Salix brachista HOM05D003114 ORTHO05D003519 2.7e-18 95.1 54 77.8
THA.LOC104803395 Tarenaya hassleriana HOM05D003114 ORTHO05D003519 2.7e-18 95.1 54 75.9
Nn6g32173 Nelumbo nucifera HOM05D003114 ORTHO05D003519 3.5e-18 94.7 54 75.9
Thecc.08G020200 Theobroma cacao HOM05D003114 ORTHO05D003519 3.5e-18 94.7 54 77.8
vmacro04486 Vaccinium macrocarpon HOM05D003114 ORTHO05D003519 3.5e-18 94.7 60 75.0
Glyma.09G114500 Glycine max HOM05D003114 ORTHO05D003519 4.6e-18 94.4 54 75.9
Glyma.14G078700 Glycine max HOM05D003114 ORTHO05D003519 4.6e-18 94.4 54 75.9
Glyma.17G246600 Glycine max HOM05D003114 ORTHO05D003519 4.6e-18 94.4 54 75.9
Lj5g0027441 Lotus japonicus HOM05D003114 ORTHO05D003519 4.6e-18 94.4 54 75.9
Lalb_Chr08g0245771 Lupinus albus HOM05D003114 ORTHO05D003519 4.6e-18 94.4 54 75.9
Atru.chr13.574 Acer truncatum HOM05D003114 ORTHO05D003519 6.0e-18 94.0 54 75.9
AL1G53790 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 6.0e-18 94.0 54 75.9
BcaC08g42958 Brassica carinata HOM05D003114 ORTHO05D003519 6.0e-18 94.0 54 75.9
A10p06300 Brassica napus HOM05D003114 ORTHO05D003519 6.0e-18 94.0 54 75.9
C06p01990 Brassica napus HOM05D003114 ORTHO05D003519 6.0e-18 94.0 54 75.9
BraA10t42896Z Brassica rapa HOM05D003114 ORTHO05D003519 6.0e-18 94.0 54 75.9
CARHR037120 Cardamine hirsuta HOM05D003114 ORTHO05D003519 6.0e-18 94.0 54 75.9
Cpa.g.sc64.34 Carica papaya HOM05D003114 ORTHO05D003519 6.0e-18 94.0 54 75.9
FAN27G1632 Fragaria x ananassa HOM05D003114 ORTHO05D003519 6.0e-18 94.0 89 55.1
QL02p007130 Quercus lobata HOM05D003114 ORTHO05D003519 6.0e-18 94.0 54 79.6
Actinidia38026 Actinidia chinensis HOM05D003114 ORTHO05D003519 7.8e-18 93.6 97 48.5
CAN.G389.2 Capsicum annuum HOM05D003114 ORTHO05D003519 7.8e-18 93.6 54 79.6
Dinv39367 Davidia involucrata HOM05D003114 ORTHO05D003519 7.8e-18 93.6 54 77.8
Duzib041G0357 Durio zibethinus HOM05D003114 ORTHO05D003519 7.8e-18 93.6 54 75.9
Duzib093G1140 Durio zibethinus HOM05D003114 ORTHO05D003519 7.8e-18 93.6 54 75.9
Rhsim12G0123700 Rhododendron simsii HOM05D003114 ORTHO05D003519 7.8e-18 93.6 54 77.8
SGA_v2.0_scaffold14G07047 Striga asiatica HOM05D003114 ORTHO05D003519 7.8e-18 93.6 54 79.6
arahy.Tifrunner.gnm1.ann1.E8QAF1 Arachis hypogaea HOM05D003114 ORTHO05D003519 1.0e-17 93.2 54 75.9
arahy.Tifrunner.gnm1.ann1.SVX42N Arachis hypogaea HOM05D003114 ORTHO05D003519 1.0e-17 93.2 54 75.9
Potri.002G131400 Populus trichocarpa HOM05D003114 ORTHO05D003519 1.0e-17 93.2 54 75.9
PGR031G3129 Punica granatum HOM05D003114 ORTHO05D003519 1.0e-17 93.2 54 75.9
Sed0021383 Sechium edule HOM05D003114 ORTHO05D003519 1.0e-17 93.2 54 77.8
FAN15G2607 Fragaria x ananassa HOM05D003114 ORTHO05D003519 1.3e-17 92.8 88 54.5
MD00G1038900 Malus domestica HOM05D003114 ORTHO05D003519 1.3e-17 92.8 54 77.8
TPR.G15746 Trifolium pratense HOM05D003114 ORTHO05D003519 1.3e-17 92.8 54 74.1
TAR625G0620 Trochodendron aralioides HOM05D003114 ORTHO05D003519 1.3e-17 92.8 54 77.8
Cc10_g03540 Coffea canephora HOM05D003114 ORTHO05D003519 1.7e-17 92.4 54 77.8
HPP92_017781 Vanilla planifolia HOM05D003114 ORTHO05D003519 1.7e-17 92.4 54 75.9
CiPaw.16G052700 Carya illinoinensis HOM05D003114 ORTHO05D003519 3.0e-17 91.7 54 77.8
Eucgr.A00473 Eucalyptus grandis HOM05D003114 ORTHO05D003519 3.0e-17 91.7 54 75.9
SalBow8G4186 Salvia bowleyana HOM05D003114 ORTHO05D003519 3.0e-17 91.7 54 79.6
AL1G53840 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 3.9e-17 91.3 54 74.1
Lj4C47G8 Lonicera japonica HOM05D003114 ORTHO05D003519 3.9e-17 91.3 54 75.9
Lalb_Chr24g0399101 Lupinus albus HOM05D003114 ORTHO05D003519 3.9e-17 91.3 54 74.1
Medtr1g021680 Medicago truncatula HOM05D003114 ORTHO05D003519 3.9e-17 91.3 54 74.1
Peaxi162Scf01340g00219 Petunia axillaris HOM05D003114 ORTHO05D003519 3.9e-17 91.3 54 75.9
Hma1.2p1_0260F.1_g104360 Hydrangea macrophylla HOM05D003114 ORTHO05D003519 5.1e-17 90.9 54 75.9
Oeu009593.2 Olea europaea HOM05D003114 ORTHO05D003519 5.1e-17 90.9 54 75.9
MSTRG.1310 Avicennia marina HOM05D003114 ORTHO05D003519 6.6e-17 90.5 54 77.8
FvH4_2g40450 Fragaria vesca HOM05D003114 ORTHO05D003519 6.6e-17 90.5 54 74.1
FAN20G2585 Fragaria x ananassa HOM05D003114 ORTHO05D003519 6.6e-17 90.5 54 74.1
Gohir.A05G197600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 6.6e-17 90.5 54 74.1
Gohir.D05G200600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 6.6e-17 90.5 54 74.1
Gorai.009G205900 Gossypium raimondii HOM05D003114 ORTHO05D003519 6.6e-17 90.5 54 74.1
RcHm_v2.0_Chr6g0300281 Rosa chinensis HOM05D003114 ORTHO05D003519 6.6e-17 90.5 54 74.1
ATR0733G144 Amborella trichopoda HOM05D003114 ORTHO05D003519 8.6e-17 90.1 54 74.1
CANSAT21G1752 Cannabis sativa HOM05D003114 ORTHO05D003519 8.6e-17 90.1 54 75.9
CANSAT25G1109 Cannabis sativa HOM05D003114 ORTHO05D003519 8.6e-17 90.1 54 75.9
ECA232G2779 Erigeron canadensis HOM05D003114 ORTHO05D003519 8.6e-17 90.1 54 75.9
MSTRG.22284 Avicennia marina HOM05D003114 ORTHO05D003519 1.1e-16 89.7 54 77.8
Dinv36027 Davidia involucrata HOM05D003114 ORTHO05D003519 1.1e-16 89.7 54 77.8
SEGI_30062 Sequoiadendron giganteum HOM05D003114 ORTHO05D003519 1.5e-16 89.4 54 75.9
CiPaw.15G069400 Carya illinoinensis HOM05D003114 ORTHO05D003519 1.9e-16 89.0 54 75.9
Migut.C00667 Erythranthe guttata HOM05D003114 ORTHO05D003519 1.9e-16 89.0 54 75.9
Lj4C782G7 Lonicera japonica HOM05D003114 ORTHO05D003519 2.5e-16 88.6 54 79.6
Psat6g010640 Pisum sativum HOM05D003114 ORTHO05D003519 2.5e-16 88.6 54 72.2
GSVIVG01009623001 Vitis vinifera HOM05D003114 ORTHO05D003519 2.5e-16 88.6 54 74.1
Ca_13324_v3 Cicer arietinum L. HOM05D003114 ORTHO05D003519 3.3e-16 88.2 54 72.2
Lsat_1_v5_gn_4_122980 Lactuca sativa HOM05D003114 ORTHO05D003519 3.3e-16 88.2 53 75.5
MSTRG.24311 Avicennia marina HOM05D003114 ORTHO05D003519 4.3e-16 87.8 54 75.9
Gohir.D11G228600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 4.3e-16 87.8 54 68.5
Gorai.007G245700 Gossypium raimondii HOM05D003114 ORTHO05D003519 4.3e-16 87.8 54 68.5
HanXRQChr09g0268391 Helianthus annuus HOM05D003114 ORTHO05D003519 4.3e-16 87.8 54 72.2
MD08G1038000 Malus domestica HOM05D003114 ORTHO05D003519 5.6e-16 87.4 54 72.2
Lalb_Chr22g0355331 Lupinus albus HOM05D003114 ORTHO05D003519 7.3e-16 87.0 56 69.6
HanXRQChr16g0507961 Helianthus annuus HOM05D003114 ORTHO05D003519 1.2e-15 86.3 54 70.4
HPP92_006943 Vanilla planifolia HOM05D003114 ORTHO05D003519 1.2e-15 86.3 55 69.1
HPP92_006946 Vanilla planifolia HOM05D003114 ORTHO05D003519 1.2e-15 86.3 55 69.1
Migut.E01196 Erythranthe guttata HOM05D003114 ORTHO05D003519 1.6e-15 85.9 54 74.1
Glyma.04G034700 Glycine max HOM05D003114 ORTHO05D003519 3.6e-15 84.7 55 70.9
Lj1g0027709 Lotus japonicus HOM05D003114 ORTHO05D003519 3.6e-15 84.7 55 72.7
VMungo1309G2059 Vigna mungo HOM05D003114 ORTHO05D003519 3.6e-15 84.7 55 70.9
Os11g0276000 Oryza sativa ssp. japonica HOM05D003114 ORTHO05D003519 4.7e-15 84.3 54 64.8
Zm00001eb168790 Zea mays HOM05D003114 ORTHO05D003519 4.7e-15 84.3 54 64.8
unitig_899.g15621 Utricularia gibba HOM05D003114 ORTHO05D003519 6.2e-15 84.0 54 68.5
AT1G47560 Arabidopsis thaliana HOM05D003114 ORTHO05D003519 1.1e-14 83.2 54 68.5
ClCG05G019260 Citrullus lanatus HOM05D003114 ORTHO05D003519 1.1e-14 83.2 83 53.0
Os03g0625700 Oryza sativa ssp. japonica HOM05D003114 ORTHO05D003519 1.1e-14 83.2 54 68.5
Pp3c11_22450 Physcomitrium patens HOM05D003114 ORTHO05D003519 1.8e-14 82.4 65 60.0
Psat0s2724g0040 Pisum sativum HOM05D003114 ORTHO05D003519 1.8e-14 82.4 55 65.5
unitig_26.g9826 Utricularia gibba HOM05D003114 ORTHO05D003519 1.8e-14 82.4 49 71.4
PSO170G0663 Papaver somniferum HOM05D003114 ORTHO05D003519 3.1e-14 81.6 54 64.8
PSO700G0395 Papaver somniferum HOM05D003114 ORTHO05D003519 3.1e-14 81.6 54 64.8
Medtr3g111590 Medicago truncatula HOM05D003114 ORTHO05D003519 5.2e-14 80.9 55 65.5
Phvul.007G175100 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 5.2e-14 80.9 44 79.5
SGA_v2.0_scaffold24G10278 Striga asiatica HOM05D003114 ORTHO05D003519 5.2e-14 80.9 54 68.5
SMO117G0063 Selaginella moellendorffii HOM05D003114 ORTHO05D003519 6.8e-14 80.5 54 68.5
Oeu015606.1 Olea europaea HOM05D003114 ORTHO05D003519 1.2e-13 79.7 54 68.5
AagrBONN_evm.TU.Sc2ySwM_228.1666 Anthoceros agrestis HOM05D003114 ORTHO05D003519 1.5e-13 79.3 53 66.0
AagrBONN_evm.TU.Sc2ySwM_228.1675 Anthoceros agrestis HOM05D003114 ORTHO05D003519 1.5e-13 79.3 53 66.0
arahy.Tifrunner.gnm1.ann1.06HR6X Arachis hypogaea HOM05D003114 ORTHO05D003519 1.5e-13 79.3 44 77.3
arahy.Tifrunner.gnm1.ann1.I3NIKD Arachis hypogaea HOM05D003114 ORTHO05D003519 1.5e-13 79.3 44 77.3
Zm00001eb051220 Zea mays HOM05D003114 ORTHO05D003519 2.0e-13 79.0 54 64.8
Gohir.A05G260500 Gossypium hirsutum HOM05D003114 ORTHO05D003519 2.6e-13 78.6 54 63.0
Migut.N02678 Erythranthe guttata HOM05D003114 ORTHO05D003519 7.6e-13 77.0 54 63.0
Mapoly0013s0072 Marchantia polymorpha HOM05D003114 ORTHO05D003519 9.9e-13 76.6 54 61.1
Phvul.009G055500 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 1.4e-11 72.8 55 63.6
Nitab4.5_0000453g0100 Nicotiana tabacum HOM05D003114 ORTHO05D003519 6.6e-09 63.9 30 96.7
AUR62038454 Chenopodium quinoa HOM05D003114 ORTHO05D003519 3.6e-07 58.2 30 80.0
AUR62042151 Chenopodium quinoa HOM05D003114 ORTHO05D003519 3.6e-07 58.2 30 80.0
PGR083G1829 Punica granatum HOM05D003114 ORTHO05D003519 1.1e-06 56.6 30 76.7
CBR_g48206 Chara braunii HOM05D003114 ORTHO05D003519 1.8e-06 55.8 54 46.3
Pp3c11_16180 Physcomitrium patens HOM05D003114 ORTHO05D003519 3.1e-06 55.1 57 42.1
Gohir.A11G227433 Gossypium hirsutum HOM05D003114 ORTHO05D003519 9.0e-06 53.5 30 70.0


User provided reference genes

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