Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g006870 Solanum pennellii HOM05D003754 ORTHO05D028482 3.9e-37 157.5 75 100.0
Solyc03g115630.3 Solanum lycopersicum HOM05D003754 ORTHO05D004530 3.4e-33 144.4 74 90.5
Sopen03g034620 Solanum pennellii HOM05D003754 ORTHO05D004530 3.4e-33 144.4 74 90.5
PGSC0003DMG401024557 Solanum tuberosum HOM05D003754 ORTHO05D004530 3.4e-33 144.4 74 90.5
CAN.G479.50 Capsicum annuum HOM05D003754 ORTHO05D004530 4.5e-33 144.1 74 89.2
Nitab4.5_0008523g0020 Nicotiana tabacum HOM05D003754 ORTHO05D004530 7.7e-33 143.3 74 90.5
CAN.G1241.25 Capsicum annuum HOM05D003754 ORTHO05D004530 1.3e-32 142.5 74 90.5
Nitab4.5_0000540g0290 Nicotiana tabacum HOM05D003754 ORTHO05D004530 3.8e-32 141.0 74 89.2
Peaxi162Scf00025g02016 Petunia axillaris HOM05D003754 ORTHO05D004530 1.9e-31 138.7 74 86.5
Cc07_g17390 Coffea canephora HOM05D003754 ORTHO05D004530 2.5e-31 138.3 74 87.8
Oeu037781.1 Olea europaea HOM05D003754 ORTHO05D004530 7.2e-31 136.7 74 86.5
Peaxi162Scf00498g00315 Petunia axillaris HOM05D003754 ORTHO05D004530 2.7e-30 134.8 74 86.5
Migut.H01123 Erythranthe guttata HOM05D003754 ORTHO05D004530 7.9e-30 133.3 74 83.8
Hma1.2p1_1882F.1_g306410 Hydrangea macrophylla HOM05D003754 ORTHO05D004530 1.0e-29 132.9 74 85.1
SalBow5G2472 Salvia bowleyana HOM05D003754 ORTHO05D004530 1.4e-29 132.5 74 82.4
SalBow5G4447 Salvia bowleyana HOM05D003754 ORTHO05D004530 1.4e-29 132.5 74 82.4
Dinv09929 Davidia involucrata HOM05D003754 ORTHO05D004530 3.9e-29 131.0 74 82.4
Sed0000423 Sechium edule HOM05D003754 ORTHO05D004530 1.5e-28 129.0 70 81.4
ClCG11G013120 Citrullus lanatus HOM05D003754 ORTHO05D004530 7.4e-28 126.7 70 80.0
MELO3C011808.2 Cucumis melo HOM05D003754 ORTHO05D004530 7.4e-28 126.7 74 78.4
MSTRG.2686 Avicennia marina HOM05D003754 ORTHO05D004530 1.3e-27 125.9 74 81.1
CsaV3_5G029640 Cucumis sativus L. HOM05D003754 ORTHO05D004530 1.7e-27 125.6 74 77.0
Hma1.2p1_0252F.1_g102755 Hydrangea macrophylla HOM05D003754 ORTHO05D004530 1.7e-27 125.6 68 85.3
Hma1.2p1_0975F.1_g243110 Hydrangea macrophylla HOM05D003754 ORTHO05D004530 1.7e-27 125.6 68 85.3
Potri.003G080900 Populus trichocarpa HOM05D003754 ORTHO05D004530 2.8e-27 124.8 74 78.4
Manes.13G086500 Manihot esculenta HOM05D003754 ORTHO05D004530 3.7e-27 124.4 74 77.0
SGA_v2.0_scaffold47G17755 Striga asiatica HOM05D003754 ORTHO05D004530 3.7e-27 124.4 68 82.4
vmacro18661 Vaccinium macrocarpon HOM05D003754 ORTHO05D004530 3.7e-27 124.4 73 80.8
Lj4A856T33 Lonicera japonica HOM05D003754 ORTHO05D004530 8.2e-27 123.2 72 77.8
GSVIVG01026584001 Vitis vinifera HOM05D003754 ORTHO05D004530 8.2e-27 123.2 74 78.4
MBI07_g22390_MAGBIO Magnolia biondii HOM05D003754 ORTHO05D004530 1.1e-26 122.9 73 76.7
Sed0005502 Sechium edule HOM05D003754 ORTHO05D004530 1.1e-26 122.9 70 77.1
TAR625G1071 Trochodendron aralioides HOM05D003754 ORTHO05D004530 1.1e-26 122.9 74 77.0
ECA246G0381 Erigeron canadensis HOM05D003754 ORTHO05D004530 1.4e-26 122.5 72 77.8
Potri.001G153400 Populus trichocarpa HOM05D003754 ORTHO05D004530 2.4e-26 121.7 74 75.7
Eucgr.I00242 Eucalyptus grandis HOM05D003754 ORTHO05D004530 3.1e-26 121.3 72 79.2
Sabra01G0123200 Salix brachista HOM05D003754 ORTHO05D004530 3.1e-26 121.3 74 75.7
Actinidia09819 Actinidia chinensis HOM05D003754 ORTHO05D004530 5.3e-26 120.6 70 78.6
PGR142G4345 Punica granatum HOM05D003754 ORTHO05D004530 5.3e-26 120.6 74 73.0
Actinidia06664 Actinidia chinensis HOM05D003754 ORTHO05D004530 7.0e-26 120.2 70 78.6
Lj1g0021659 Lotus japonicus HOM05D003754 ORTHO05D004530 1.5e-25 119.0 70 75.7
Zm00001eb188530 Zea mays HOM05D003754 ORTHO05D004530 1.5e-25 119.0 71 74.6
PSO017G1739 Papaver somniferum HOM05D003754 ORTHO05D004530 2.0e-25 118.6 71 76.1
PSO675G1326 Papaver somniferum HOM05D003754 ORTHO05D004530 2.0e-25 118.6 71 76.1
Cfa002865 Carpinus fangiana HOM05D003754 ORTHO05D004530 2.6e-25 118.2 74 74.3
HanXRQChr05g0132711 Helianthus annuus HOM05D003754 ORTHO05D004530 2.6e-25 118.2 70 77.1
HanXRQChr16g0507191 Helianthus annuus HOM05D003754 ORTHO05D004530 2.6e-25 118.2 70 77.1
Cpa.g.sc42.92 Carica papaya HOM05D003754 ORTHO05D004530 3.5e-25 117.9 74 73.0
Hund00470 Selenicereus undatus HOM05D003754 ORTHO05D004530 3.5e-25 117.9 72 72.2
Zm00001eb252240 Zea mays HOM05D003754 ORTHO05D004530 4.5e-25 117.5 71 71.8
ATR0787G147 Amborella trichopoda HOM05D003754 ORTHO05D004530 7.7e-25 116.7 68 76.5
Haze_25183 Corylus avellana HOM05D003754 ORTHO05D004530 7.7e-25 116.7 74 73.0
PSO063G2422 Papaver somniferum HOM05D003754 ORTHO05D004530 7.7e-25 116.7 73 71.2
PSO170G5654 Papaver somniferum HOM05D003754 ORTHO05D004530 7.7e-25 116.7 73 71.2
Aqoxy1G00632 Aquilegia oxysepala HOM05D003754 ORTHO05D004530 1.0e-24 116.3 74 73.0
Prupe.6G163300 Prunus persica HOM05D003754 ORTHO05D004530 1.0e-24 116.3 74 74.3
COL.COLO4_22427 Corchorus olitorius HOM05D003754 ORTHO05D004530 1.3e-24 115.9 74 73.0
Gohir.D11G231200 Gossypium hirsutum HOM05D003754 ORTHO05D004530 1.3e-24 115.9 74 74.3
Gorai.003G069700 Gossypium raimondii HOM05D003754 ORTHO05D004530 1.3e-24 115.9 74 74.3
AUR62017270 Chenopodium quinoa HOM05D003754 ORTHO05D004530 1.7e-24 115.5 72 69.4
Mapoly0008s0155 Marchantia polymorpha HOM05D003754 ORTHO05D004530 1.7e-24 115.5 70 68.6
RcHm_v2.0_Chr2g0150151 Rosa chinensis HOM05D003754 ORTHO05D004530 1.7e-24 115.5 74 71.6
RcHm_v2.0_Chr5g0078331 Rosa chinensis HOM05D003754 ORTHO05D004530 1.7e-24 115.5 74 71.6
VMungo0251G2586 Vigna mungo HOM05D003754 ORTHO05D004530 2.2e-24 115.2 72 72.2
arahy.Tifrunner.gnm1.ann1.JRXR5K Arachis hypogaea HOM05D003754 ORTHO05D004530 2.9e-24 114.8 72 72.2
EL10Ac4g10006 Beta vulgaris HOM05D003754 ORTHO05D004530 2.9e-24 114.8 72 70.8
Duzib264G0672 Durio zibethinus HOM05D003754 ORTHO05D004530 2.9e-24 114.8 74 73.0
Gohir.D11G058200 Gossypium hirsutum HOM05D003754 ORTHO05D004530 2.9e-24 114.8 74 73.0
Gorai.007G063500 Gossypium raimondii HOM05D003754 ORTHO05D004530 2.9e-24 114.8 74 73.0
QL06p051895 Quercus lobata HOM05D003754 ORTHO05D004530 2.9e-24 114.8 73 72.6
THA.LOC104820363 Tarenaya hassleriana HOM05D003754 ORTHO05D004530 2.9e-24 114.8 68 75.0
TWI79G1638 Tripterygium wilfordii HOM05D003754 ORTHO05D004530 2.9e-24 114.8 74 71.6
EL10Ac7g16883 Beta vulgaris HOM05D003754 ORTHO05D004530 3.8e-24 114.4 72 70.8
AUR62010627 Chenopodium quinoa HOM05D003754 ORTHO05D004530 3.8e-24 114.4 72 69.4
Duzib187G0686 Durio zibethinus HOM05D003754 ORTHO05D004530 3.8e-24 114.4 74 73.0
Duzib187G1293 Durio zibethinus HOM05D003754 ORTHO05D004530 3.8e-24 114.4 74 73.0
FvH4_3g43670 Fragaria vesca HOM05D003754 ORTHO05D004530 3.8e-24 114.4 74 71.6
FAN11G0854 Fragaria x ananassa HOM05D003754 ORTHO05D004530 3.8e-24 114.4 74 71.6
FAN16G1056 Fragaria x ananassa HOM05D003754 ORTHO05D004530 3.8e-24 114.4 74 71.6
FAN21G2117 Fragaria x ananassa HOM05D003754 ORTHO05D004530 3.8e-24 114.4 74 71.6
FAN25G1759 Fragaria x ananassa HOM05D003754 ORTHO05D004530 3.8e-24 114.4 74 71.6
Gohir.A11G227533 Gossypium hirsutum HOM05D003754 ORTHO05D004530 3.8e-24 114.4 74 74.3
Lalb_Chr13g0296421 Lupinus albus HOM05D003754 ORTHO05D004530 3.8e-24 114.4 73 68.5
Pp3c11_11760 Physcomitrium patens HOM05D003754 ORTHO05D004530 3.8e-24 114.4 74 63.5
Carub.0005s0630 Capsella rubella HOM05D003754 ORTHO05D004530 5.0e-24 114.0 70 72.9
Glyma.04G216000 Glycine max HOM05D003754 ORTHO05D004530 5.0e-24 114.0 70 74.3
FvH4_5g29030 Fragaria vesca HOM05D003754 ORTHO05D004530 6.5e-24 113.6 74 70.3
FAN18G2098 Fragaria x ananassa HOM05D003754 ORTHO05D004530 6.5e-24 113.6 74 70.3
MD15G1342400 Malus domestica HOM05D003754 ORTHO05D004530 6.5e-24 113.6 74 73.0
Thecc.01G121700 Theobroma cacao HOM05D003754 ORTHO05D004530 6.5e-24 113.6 74 73.0
arahy.Tifrunner.gnm1.ann1.H83BDD Arachis hypogaea HOM05D003754 ORTHO05D004530 8.5e-24 113.2 73 68.5
arahy.Tifrunner.gnm1.ann1.IAY1GN Arachis hypogaea HOM05D003754 ORTHO05D004530 8.5e-24 113.2 73 69.9
Ciclev10025660m.g Citrus clementina HOM05D003754 ORTHO05D004530 8.5e-24 113.2 74 68.9
PGSC0003DMG400000337 Solanum tuberosum HOM05D003754 ORTHO05D004530 8.5e-24 113.2 57 89.5
Prupe.6G016000 Prunus persica HOM05D003754 ORTHO05D004530 1.1e-23 112.8 73 71.2
VMungo1309G1400 Vigna mungo HOM05D003754 ORTHO05D004530 1.1e-23 112.8 70 74.3
CANSAT01G2639 Cannabis sativa HOM05D003754 ORTHO05D004530 1.4e-23 112.5 70 72.9
AT3G27740 Arabidopsis thaliana HOM05D003754 ORTHO05D004530 1.9e-23 112.1 70 71.4
BcaB05g24461 Brassica carinata HOM05D003754 ORTHO05D004530 1.9e-23 112.1 70 71.4
FAN08G0734 Fragaria x ananassa HOM05D003754 ORTHO05D004530 1.9e-23 112.1 74 68.9
FAN13G0594 Fragaria x ananassa HOM05D003754 ORTHO05D004530 1.9e-23 112.1 74 68.9
MD11G1021800 Malus domestica HOM05D003754 ORTHO05D004530 1.9e-23 112.1 74 70.3
Phvul.009G147600 Phaseolus vulgaris HOM05D003754 ORTHO05D004530 1.9e-23 112.1 70 72.9
SEGI_05555 Sequoiadendron giganteum HOM05D003754 ORTHO05D004530 1.9e-23 112.1 70 70.0
TPR.G18713 Trifolium pratense HOM05D003754 ORTHO05D004530 1.9e-23 112.1 70 71.4
MD03G1020600 Malus domestica HOM05D003754 ORTHO05D004530 2.5e-23 111.7 74 70.3
Psat5g063800 Pisum sativum HOM05D003754 ORTHO05D004530 2.5e-23 111.7 70 71.4
AL5G17190 Arabidopsis lyrata HOM05D003754 ORTHO05D004530 3.2e-23 111.3 70 71.4
BcaB03g14725 Brassica carinata HOM05D003754 ORTHO05D004530 3.2e-23 111.3 70 71.4
BcaC08g46397 Brassica carinata HOM05D003754 ORTHO05D004530 3.2e-23 111.3 70 71.4
A02p15970 Brassica napus HOM05D003754 ORTHO05D004530 3.2e-23 111.3 70 71.4
A07p35920 Brassica napus HOM05D003754 ORTHO05D004530 3.2e-23 111.3 70 71.4
C06p43290 Brassica napus HOM05D003754 ORTHO05D004530 3.2e-23 111.3 70 71.4
BolC6t39404H Brassica oleracea HOM05D003754 ORTHO05D004530 3.2e-23 111.3 70 71.4
BraA02t06656Z Brassica rapa HOM05D003754 ORTHO05D004530 3.2e-23 111.3 70 71.4
BraA07t31175Z Brassica rapa HOM05D003754 ORTHO05D004530 3.2e-23 111.3 70 71.4
Thhalv10018601m.g Eutrema salsugineum HOM05D003754 ORTHO05D004530 3.2e-23 111.3 70 71.4
Glyma.05G188500 Glycine max HOM05D003754 ORTHO05D004530 3.2e-23 111.3 72 70.8
Medtr3g095490 Medicago truncatula HOM05D003754 ORTHO05D004530 3.2e-23 111.3 68 72.1
TPR.G3506 Trifolium pratense HOM05D003754 ORTHO05D004530 3.2e-23 111.3 68 72.1
Ca_16915_v3 Cicer arietinum L. HOM05D003754 ORTHO05D004530 4.2e-23 110.9 68 72.1
Gohir.A11G054600 Gossypium hirsutum HOM05D003754 ORTHO05D004530 5.5e-23 110.5 72 72.2
Lalb_Chr12g0203311 Lupinus albus HOM05D003754 ORTHO05D004530 5.5e-23 110.5 70 72.9
Pp3c7_8810 Physcomitrium patens HOM05D003754 ORTHO05D004530 7.2e-23 110.2 74 62.2
Sp5g24680 Schrenkiella parvula HOM05D003754 ORTHO05D004530 7.2e-23 110.2 70 70.0
Medtr4g103830 Medicago truncatula HOM05D003754 ORTHO05D004530 9.4e-23 109.8 70 70.0
Atru.chr4.2901 Acer truncatum HOM05D003754 ORTHO05D004530 1.2e-22 109.4 70 70.0
CARHR038270 Cardamine hirsuta HOM05D003754 ORTHO05D004530 1.6e-22 109.0 70 70.0
BcaC03g15094 Brassica carinata HOM05D003754 ORTHO05D004530 2.1e-22 108.6 70 70.0
BolC2t08726H Brassica oleracea HOM05D003754 ORTHO05D004530 2.1e-22 108.6 70 70.0
CAN.G2021.3 Capsicum annuum HOM05D003754 ORTHO05D028482 2.1e-22 108.6 56 89.3
CiPaw.03G124200 Carya illinoinensis HOM05D003754 ORTHO05D004530 2.1e-22 108.6 72 69.4
Oeu047648.2 Olea europaea HOM05D003754 ORTHO05D004530 2.1e-22 108.6 57 84.2
C02p26550 Brassica napus HOM05D003754 ORTHO05D004530 3.6e-22 107.8 70 70.0
CAN.G816.23 Capsicum annuum HOM05D003754 ORTHO05D028482 3.6e-22 107.8 54 90.7
HPP92_024507 Vanilla planifolia HOM05D003754 ORTHO05D004530 3.6e-22 107.8 72 68.1
HPP92_024510 Vanilla planifolia HOM05D003754 ORTHO05D004530 3.6e-22 107.8 72 68.1
SMO292G0005 Selaginella moellendorffii HOM05D003754 ORTHO05D004530 4.7e-22 107.5 69 65.2
CDE02G3666 Ceratophyllum demersum HOM05D003754 ORTHO05D004530 8.0e-22 106.7 66 69.7
CDE09G1207 Ceratophyllum demersum HOM05D003754 ORTHO05D004530 8.0e-22 106.7 66 69.7
SMO164G0151 Selaginella moellendorffii HOM05D003754 ORTHO05D004530 8.0e-22 106.7 69 65.2
Ciclev10006484m.g Citrus clementina HOM05D003754 ORTHO05D028482 1.4e-21 105.9 74 66.2
CSS0004755 Camellia sinensis var. sinensis HOM05D003754 ORTHO05D004530 3.0e-21 104.8 57 82.5
Nn7g38167 Nelumbo nucifera HOM05D003754 ORTHO05D004530 3.0e-21 104.8 56 82.1
AagrBONN_evm.TU.Sc2ySwM_117.1845 Anthoceros agrestis HOM05D003754 ORTHO05D004530 3.9e-21 104.4 74 59.5
QL10p011683 Quercus lobata HOM05D003754 ORTHO05D004530 3.9e-21 104.4 73 68.5
Lsat_1_v5_gn_2_115701 Lactuca sativa HOM05D003754 ORTHO05D004530 6.7e-21 103.6 58 82.8
Cre06.g308500 Chlamydomonas reinhardtii HOM05D003754 ORTHO05D004530 1.1e-20 102.8 70 60.0
DCAR_014347 Daucus carota HOM05D003754 ORTHO05D004530 2.0e-20 102.1 57 80.7
Sabra03G0052100 Salix brachista HOM05D003754 ORTHO05D004530 3.3e-20 101.3 56 82.1
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 4.4e-20 100.9 56 80.4
CBR_g8394 Chara braunii HOM05D003754 ORTHO05D004530 4.4e-20 100.9 68 61.8
Ah.15g092910 Amaranthus hybridus HOM05D003754 ORTHO05D004530 5.7e-20 100.5 56 82.1
Glyma.06G150000 Glycine max HOM05D003754 ORTHO05D004530 1.7e-19 99.0 56 78.6
PRCOL_00005740 Prasinoderma coloniale HOM05D003754 ORTHO05D004530 1.7e-19 99.0 70 61.4
MCO05G701 Micromonas commoda HOM05D003754 ORTHO05D004530 6.3e-19 97.1 68 57.4
Sc25g0003300 Simmondsia chinensis HOM05D003754 ORTHO05D004530 1.4e-18 95.9 57 75.4
Aqoxy5G02121 Aquilegia oxysepala HOM05D003754 ORTHO05D004530 7.0e-18 93.6 54 72.2
unitig_699.g19714 Utricularia gibba HOM05D003754 ORTHO05D004530 5.0e-16 87.4 51 78.4
Haze_27195 Corylus avellana HOM05D003754 ORTHO05D004530 7.0e-10 67.0 67 49.3
Haze_27203 Corylus avellana HOM05D003754 ORTHO05D004530 9.1e-10 66.6 73 41.1
arahy.Tifrunner.gnm1.ann1.9E66QM Arachis hypogaea HOM05D003754 ORTHO05D004530 3.8e-08 61.2 34 73.5
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 7.2e-07 57.0 52 51.9


User provided reference genes

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