Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g006210 Solanum pennellii HOM05D000047 ORTHO05D011806 1.5e-92 342.8 175 100.0
Solyc10g012380.2 Solanum lycopersicum HOM05D000047 ORTHO05D011806 1.0e-75 287.0 150 96.7
PGSC0003DMG400019393 Solanum tuberosum HOM05D000047 ORTHO05D011806 3.5e-68 261.9 170 76.5
Solyc10g012180.1 Solanum lycopersicum HOM05D000047 ORTHO05D011806 4.1e-61 238.4 170 72.4
Sopen10g005940 Solanum pennellii HOM05D000047 ORTHO05D011806 7.0e-61 237.7 170 72.4
Sopen10g005960 Solanum pennellii HOM05D000047 ORTHO05D011806 4.5e-60 235.0 170 72.4
Solyc10g012200.1 Solanum lycopersicum HOM05D000047 ORTHO05D011806 1.9e-58 229.6 170 70.0
PGSC0003DMG400035501 Solanum tuberosum HOM05D000047 ORTHO05D011806 1.7e-43 179.9 106 84.0
PGSC0003DMG400037338 Solanum tuberosum HOM05D000047 ORTHO05D011806 4.6e-36 155.2 177 50.8
CAN.G111.33 Capsicum annuum HOM05D000047 ORTHO05D011806 3.2e-21 105.9 85 62.4
Peaxi162Scf00008g00273 Petunia axillaris HOM05D011546 ORTHO05D011806 2.1e-20 103.2 194 40.2
Nitab4.5_0001549g0020 Nicotiana tabacum HOM05D011546 ORTHO05D011806 4.3e-18 95.5 184 36.4
Nitab4.5_0000977g0170 Nicotiana tabacum HOM05D011546 ORTHO05D011806 1.9e-13 80.1 170 35.9
Nitab4.5_0003651g0030 Nicotiana tabacum HOM05D011546 ORTHO05D011806 2.4e-13 79.7 167 37.1
Nitab4.5_0001862g0020 Nicotiana tabacum HOM05D011546 ORTHO05D011806 4.1e-13 79.0 154 35.7
Nitab4.5_0000436g0010 Nicotiana tabacum HOM05D011546 ORTHO05D011806 7.1e-13 78.2 127 40.2
Nitab4.5_0013840g0010 Nicotiana tabacum HOM05D011546 ORTHO05D011806 2.5e-10 69.7 146 37.0
Peaxi162Scf00803g00314 Petunia axillaris HOM05D045933 ORTHO05D011806 3.3e-10 69.3 160 30.0
CAN.G638.76 Capsicum annuum HOM05D011546 ORTHO05D011806 6.2e-09 65.1 186 31.2
Nitab4.5_0023197g0010 Nicotiana tabacum HOM05D011546 ORTHO05D011806 6.2e-09 65.1 139 35.3
Lalb_Chr07g0187161 Lupinus albus HOM05D000203 ORTHO05D000135 1.1e-08 64.3 70 38.6
Lalb_Chr07g0189771 Lupinus albus HOM05D000203 ORTHO05D000135 1.8e-08 63.5 66 40.9
Peaxi162Scf00803g00313 Petunia axillaris HOM05D045933 ORTHO05D011806 4.0e-08 62.4 166 30.7
Nitab4.5_0000977g0160 Nicotiana tabacum HOM05D011546 ORTHO05D011806 6.8e-08 61.6 159 34.0
Nitab4.5_0000977g0180 Nicotiana tabacum HOM05D011546 ORTHO05D011806 8.9e-08 61.2 48 58.3
VMungo0251G0344 Vigna mungo HOM05D000203 ORTHO05D000135 2.0e-07 60.1 66 39.4
Ca_22979_v3 Cicer arietinum L. HOM05D000203 ORTHO05D000135 2.6e-07 59.7 135 28.9
Actinidia16725 Actinidia chinensis HOM05D000203 ORTHO05D000135 4.4e-07 58.9 149 30.2
MELO3C002723.2 Cucumis melo HOM05D000203 ORTHO05D000135 4.4e-07 58.9 146 26.7
Lalb_Chr13g0294081 Lupinus albus HOM05D000203 ORTHO05D000135 4.4e-07 58.9 66 36.4
Glyma.18G143800 Glycine max HOM05D000203 ORTHO05D000135 5.8e-07 58.5 115 32.2
Ciclev10017472m.g Citrus clementina HOM05D000203 ORTHO05D000135 7.6e-07 58.2 162 26.5
HanXRQChr14g0431471 Helianthus annuus HOM05D000203 ORTHO05D000135 7.6e-07 58.2 97 33.0
MD05G1287100 Malus domestica HOM05D000203 ORTHO05D000135 7.6e-07 58.2 166 22.9
Sed0017436 Sechium edule HOM05D000203 ORTHO05D000135 7.6e-07 58.2 132 28.0
Thecc.06G153500 Theobroma cacao HOM05D000203 ORTHO05D000135 7.6e-07 58.2 131 29.0
Cpa.g.sc505.2 Carica papaya HOM05D000203 ORTHO05D000135 9.9e-07 57.8 86 38.4
CsaV3_1G032570 Cucumis sativus L. HOM05D000203 ORTHO05D000135 9.9e-07 57.8 167 25.1
ECA247G1055 Erigeron canadensis HOM05D000203 ORTHO05D000135 9.9e-07 57.8 158 27.2
Phvul.002G309200 Phaseolus vulgaris HOM05D000203 ORTHO05D000135 9.9e-07 57.8 66 37.9
Duzib160G0196 Durio zibethinus HOM05D000203 ORTHO05D000135 1.3e-06 57.4 65 38.5
MD10G1264500 Malus domestica HOM05D000203 ORTHO05D000135 1.3e-06 57.4 95 29.5
Glyma.05G227200 Glycine max HOM05D000203 ORTHO05D000135 1.7e-06 57.0 140 30.0
CAN.G1352.5 Capsicum annuum HOM05D011546 ORTHO05D011806 2.9e-06 56.2 52 48.1
AUR62027600 Chenopodium quinoa HOM05D000203 ORTHO05D000135 2.9e-06 56.2 49 51.0
Lj4g0021882 Lotus japonicus HOM05D000203 ORTHO05D000135 2.9e-06 56.2 66 37.9
Cpa.g.c30114.1 Carica papaya HOM05D000203 ORTHO05D000135 3.8e-06 55.8 86 37.2
ClCG03G006990 Citrullus lanatus HOM05D000203 ORTHO05D000135 3.8e-06 55.8 146 27.4
Glyma.08G033900 Glycine max HOM05D000203 ORTHO05D000135 3.8e-06 55.8 157 25.5
Psat3g164040 Pisum sativum HOM05D000203 ORTHO05D000135 3.8e-06 55.8 160 23.1
Cpa.g.c41623 Carica papaya HOM05D000203 ORTHO05D000135 4.9e-06 55.5 142 26.1
Cpa.g.sc348.3 Carica papaya HOM05D000203 ORTHO05D000135 4.9e-06 55.5 82 39.0
Cpa.g.sc505.6 Carica papaya HOM05D000203 ORTHO05D000135 4.9e-06 55.5 86 37.2
Cpa.g.sc54.68 Carica papaya HOM05D000203 ORTHO05D000135 4.9e-06 55.5 77 40.3
Cpa.g.sc851.1 Carica papaya HOM05D000203 ORTHO05D000135 4.9e-06 55.5 57 45.6
CiPaw.06G163000 Carya illinoinensis HOM05D000203 ORTHO05D000135 4.9e-06 55.5 54 42.6
DCAR_022541 Daucus carota HOM05D000203 ORTHO05D000135 4.9e-06 55.5 76 36.8
Eucgr.D00311 Eucalyptus grandis HOM05D000203 ORTHO05D000135 4.9e-06 55.5 103 29.1
Lsat_1_v5_gn_1_6501 Lactuca sativa HOM05D000203 ORTHO05D000135 4.9e-06 55.5 73 34.2
Medtr4g131030 Medicago truncatula HOM05D000203 ORTHO05D000135 4.9e-06 55.5 66 34.8
Phvul.002G309400 Phaseolus vulgaris HOM05D000203 ORTHO05D000135 4.9e-06 55.5 66 34.8
Aa31LG8G6470 Aethionema arabicum HOM05D000203 ORTHO05D000135 6.4e-06 55.1 63 39.7
Cpa.g.c35713 Carica papaya HOM05D000203 ORTHO05D000135 6.4e-06 55.1 86 36.0
ECA238G3327 Erigeron canadensis HOM05D000203 ORTHO05D000135 6.4e-06 55.1 51 45.1
Eucgr.D00312 Eucalyptus grandis HOM05D000203 ORTHO05D000135 6.4e-06 55.1 103 31.1
Glyma.08G282500 Glycine max HOM05D000203 ORTHO05D000135 6.4e-06 55.1 160 23.8
Lalb_Chr23g0271471 Lupinus albus HOM05D000203 ORTHO05D000135 6.4e-06 55.1 66 34.8
Nitab4.5_0000047g0270 Nicotiana tabacum HOM05D000203 ORTHO05D000135 6.4e-06 55.1 50 44.0
SGA_v2.0_scaffold1G00154 Striga asiatica HOM05D000203 ORTHO05D000135 6.4e-06 55.1 113 32.7
TWI81G0246 Tripterygium wilfordii HOM05D000203 ORTHO05D000135 6.4e-06 55.1 67 37.3
TAR628G1329 Trochodendron aralioides HOM05D000894 ORTHO05D001833 6.4e-06 55.1 145 29.7
VMungo0251G1515 Vigna mungo HOM05D000203 ORTHO05D000135 6.4e-06 55.1 66 34.8
Carub.0008s2113 Capsella rubella HOM05D000203 ORTHO05D000135 8.4e-06 54.7 64 40.6
Cpa.g.c33038 Carica papaya HOM05D000203 ORTHO05D000135 8.4e-06 54.7 86 37.2
Cpa.g.sc758.4 Carica papaya HOM05D000203 ORTHO05D000135 8.4e-06 54.7 86 37.2
AUR62030240 Chenopodium quinoa HOM05D000203 ORTHO05D000135 8.4e-06 54.7 45 53.3
Lsat_1_v5_gn_1_6441 Lactuca sativa HOM05D000203 ORTHO05D000135 8.4e-06 54.7 136 27.2
Lj5g0010179 Lotus japonicus HOM05D000203 ORTHO05D000135 8.4e-06 54.7 145 27.6
Manes.17G067800 Manihot esculenta HOM05D000203 ORTHO05D000135 8.4e-06 54.7 93 30.1
Nitab4.5_0002011g0080 Nicotiana tabacum HOM05D000203 ORTHO05D000135 8.4e-06 54.7 50 44.0
Psat7g091080 Pisum sativum HOM05D000203 ORTHO05D000135 8.4e-06 54.7 68 32.4
Potri.004G131100 Populus trichocarpa HOM05D000203 ORTHO05D000135 8.4e-06 54.7 117 28.2
Prupe.8G152000 Prunus persica HOM05D000203 ORTHO05D000135 8.4e-06 54.7 68 41.2


User provided reference genes

Program Settings