Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 1.1e-77 293.1 142 100.0
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 3.3e-77 291.6 142 99.3
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 2.8e-76 288.5 142 98.6
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 2.1e-71 272.3 143 92.3
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 6.7e-70 267.3 142 89.4
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 2.5e-64 248.8 133 90.2
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 4.5e-58 228.0 142 78.2
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.4e-56 223.0 140 80.0
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 1.9e-56 222.6 137 79.6
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 7.2e-56 220.7 136 77.9
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 7.2e-56 220.7 136 77.9
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 9.3e-56 220.3 137 78.1
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 1.2e-55 219.9 135 75.6
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 2.1e-55 219.2 135 75.6
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 2.7e-55 218.8 139 76.3
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 6.1e-55 217.6 137 75.9
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 6.1e-55 217.6 139 74.1
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 6.1e-55 217.6 139 74.1
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 7.9e-55 217.2 137 75.9
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 7.9e-55 217.2 143 74.1
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 1.0e-54 216.9 135 74.8
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 1.0e-54 216.9 126 80.2
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 5.1e-54 214.5 145 71.0
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 5.1e-54 214.5 140 75.0
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 5.1e-54 214.5 137 77.4
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 6.7e-54 214.2 140 75.0
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 6.7e-54 214.2 139 73.4
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 6.7e-54 214.2 139 73.4
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 6.7e-54 214.2 139 73.4
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 8.7e-54 213.8 133 78.9
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.5e-53 213.0 139 72.7
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 4.3e-53 211.5 138 75.4
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 5.7e-53 211.1 139 71.2
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 5.7e-53 211.1 140 72.9
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 7.4e-53 210.7 133 77.4
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 7.4e-53 210.7 133 77.4
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 7.4e-53 210.7 129 82.2
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 7.4e-53 210.7 137 74.5
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 9.7e-53 210.3 144 74.3
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 1.3e-52 209.9 133 75.9
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 1.3e-52 209.9 142 73.2
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 1.6e-52 209.5 144 73.6
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 1.6e-52 209.5 137 73.0
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 1.6e-52 209.5 136 75.7
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 2.2e-52 209.1 133 75.9
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 2.2e-52 209.1 141 73.8
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 2.2e-52 209.1 138 75.4
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 2.2e-52 209.1 129 79.1
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 2.8e-52 208.8 130 78.5
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 2.8e-52 208.8 133 75.9
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 2.8e-52 208.8 130 78.5
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 2.8e-52 208.8 133 75.9
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 3.7e-52 208.4 139 71.2
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 3.7e-52 208.4 133 76.7
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 3.7e-52 208.4 133 76.7
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 3.7e-52 208.4 140 75.7
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 3.7e-52 208.4 133 75.9
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 4.8e-52 208.0 133 75.9
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 4.8e-52 208.0 133 75.2
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 4.8e-52 208.0 133 75.2
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 4.8e-52 208.0 133 75.2
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 4.8e-52 208.0 139 72.7
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 6.3e-52 207.6 126 82.5
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 6.3e-52 207.6 130 77.7
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 6.3e-52 207.6 146 70.5
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 8.2e-52 207.2 143 74.1
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 8.2e-52 207.2 133 75.9
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 8.2e-52 207.2 129 78.3
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 8.2e-52 207.2 138 72.5
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 1.1e-51 206.8 129 78.3
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 1.1e-51 206.8 144 74.3
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 1.1e-51 206.8 143 70.6
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 1.4e-51 206.5 129 78.3
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 1.8e-51 206.1 133 73.7
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 1.8e-51 206.1 126 81.0
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 1.8e-51 206.1 138 73.9
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 2.4e-51 205.7 129 78.3
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 3.1e-51 205.3 133 75.2
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 4.1e-51 204.9 135 74.8
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 5.3e-51 204.5 138 71.7
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 5.3e-51 204.5 137 74.5
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 6.9e-51 204.1 133 74.4
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 6.9e-51 204.1 126 81.0
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 6.9e-51 204.1 129 77.5
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 6.9e-51 204.1 144 73.6
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 9.1e-51 203.8 129 78.3
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 9.1e-51 203.8 138 71.0
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 9.1e-51 203.8 131 77.1
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 2.0e-50 202.6 143 69.9
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 5.9e-50 201.1 140 72.1
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 7.7e-50 200.7 141 72.3
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 1.7e-49 199.5 135 70.4
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 2.2e-49 199.1 129 76.7
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 2.9e-49 198.7 155 64.5
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 5.0e-49 198.0 137 69.3
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 8.5e-49 197.2 127 76.4
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 1.4e-48 196.4 126 81.0
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 1.4e-48 196.4 143 67.8
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 1.4e-48 196.4 140 69.3
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 5.5e-48 194.5 128 75.8
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 7.2e-48 194.1 121 76.9
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 1.2e-47 193.4 127 74.8
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 2.7e-47 192.2 124 76.6
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 3.6e-47 191.8 132 75.0
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.9e-46 188.3 113 78.8
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 5.1e-46 188.0 124 75.0
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 1.1e-45 186.8 145 64.8
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 1.5e-45 186.4 132 71.2
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 3.3e-45 185.3 178 55.6
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 4.4e-45 184.9 143 65.7
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 5.7e-45 184.5 143 64.3
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 1.7e-44 183.0 121 71.9
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 1.2e-42 176.8 140 66.4
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 4.5e-42 174.9 247 43.7
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 1.7e-41 172.9 107 78.5
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 2.9e-41 172.2 247 43.3
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 2.9e-41 172.2 118 68.6
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 6.5e-41 171.0 108 75.0
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 8.5e-41 170.6 124 65.3
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 7.2e-40 167.5 124 67.7
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 9.4e-40 167.2 124 64.5
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 9.7e-37 157.1 125 64.0
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 5.9e-34 147.9 120 60.0
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 1.7e-33 146.4 147 53.7
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 8.5e-33 144.1 87 80.5
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.1e-32 143.7 87 79.3
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 2.5e-32 142.5 87 78.2
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 1.2e-31 140.2 86 79.1
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 2.1e-31 139.4 82 84.1
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 3.6e-31 138.7 100 66.0
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 1.8e-30 136.3 82 79.3
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 4.4e-29 131.7 87 73.6
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 4.8e-28 128.3 82 79.3
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 6.3e-28 127.9 120 51.7
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 1.6e-26 123.2 109 54.1
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 5.0e-25 118.2 87 70.1
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 5.2e-14 81.6 54 68.5
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 2.0e-13 79.7 54 72.2
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 2.4e-11 72.8 47 74.5
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 7.0e-11 71.2 63 47.6
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 2.0e-10 69.7 47 70.2
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 4.5e-10 68.6 53 62.3
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 3.8e-09 65.5 57 57.9
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 8.6e-09 64.3 40 72.5
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 4.3e-08 62.0 50 62.0


User provided reference genes

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