Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g002160 Solanum pennellii HOM05D000399 ORTHO05D000304 9.8e-46 186.4 93 100.0
Solyc10g006200.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 9.5e-41 169.9 93 92.5
CAN.G492.19 Capsicum annuum HOM05D000399 ORTHO05D000304 6.0e-27 124.0 84 76.2
Peaxi162Scf00339g00079 Petunia axillaris HOM05D000399 ORTHO05D000304 4.1e-20 101.3 63 68.3
Nitab4.5_0005265g0030 Nicotiana tabacum HOM05D000399 ORTHO05D000304 6.0e-19 97.4 62 67.7
CAN.G952.2 Capsicum annuum HOM05D000399 ORTHO05D000304 1.7e-18 95.9 63 63.5
Nitab4.5_0000981g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.3e-18 95.5 62 66.1
Solyc12g014410.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 3.9e-18 94.7 63 61.9
PGSC0003DMG400012864 Solanum tuberosum HOM05D000399 ORTHO05D000304 3.9e-18 94.7 63 61.9
Nitab4.5_0001393g0110 Nicotiana tabacum HOM05D000399 ORTHO05D000304 8.6e-18 93.6 87 58.6
Sopen12g007270 Solanum pennellii HOM05D000399 ORTHO05D000304 1.1e-17 93.2 63 60.3
Nitab4.5_0004927g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 3.6e-16 88.2 62 61.3
Cc05_g14090 Coffea canephora HOM05D000399 ORTHO05D000304 1.1e-15 86.7 60 65.0
HanXRQChr17g0546441 Helianthus annuus HOM05D000399 ORTHO05D000304 4.0e-15 84.7 61 60.7
Dinv40784 Davidia involucrata HOM05D000399 ORTHO05D000304 6.8e-15 84.0 56 64.3
CSS0028681 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 8.9e-15 83.6 56 60.7
CAN.G1337.34 Capsicum annuum HOM05D000399 ORTHO05D000304 1.7e-13 79.3 59 72.9
Nn1g03450 Nelumbo nucifera HOM05D000399 ORTHO05D000304 2.2e-13 79.0 63 54.0
Sc07g0002840 Simmondsia chinensis HOM05D000399 ORTHO05D000304 2.9e-13 78.6 60 58.3
CiPaw.12G132200 Carya illinoinensis HOM05D000399 ORTHO05D000304 4.9e-13 77.8 61 54.1
Manes.15G068000 Manihot esculenta HOM05D000399 ORTHO05D000304 6.4e-13 77.4 54 53.7
Potri.011G086700 Populus trichocarpa HOM05D000399 ORTHO05D000304 6.4e-13 77.4 63 49.2
Atru.chr2.3497 Acer truncatum HOM05D000399 ORTHO05D000304 8.4e-13 77.0 58 55.2
SalBow8G1530 Salvia bowleyana HOM05D000399 ORTHO05D000304 8.4e-13 77.0 54 57.4
TWI39G0857 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 8.4e-13 77.0 60 53.3
GSVIVG01037698001 Vitis vinifera HOM05D000399 ORTHO05D000304 1.1e-12 76.6 62 48.4
Actinidia35365 Actinidia chinensis HOM05D000399 ORTHO05D000304 1.9e-12 75.9 54 59.3
TAR626G0927 Trochodendron aralioides HOM05D000399 ORTHO05D000304 2.4e-12 75.5 54 57.4
CDE11G1088 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 3.2e-12 75.1 63 52.4
AUR62015826 Chenopodium quinoa HOM05D000399 ORTHO05D000304 5.4e-12 74.3 60 56.7
Migut.M01731 Erythranthe guttata HOM05D000399 ORTHO05D000304 7.1e-12 73.9 54 57.4
Ciclev10008694m.g Citrus clementina HOM05D000399 ORTHO05D000304 9.3e-12 73.6 60 50.0
MSTRG.6943 Avicennia marina HOM05D000399 ORTHO05D000304 1.2e-11 73.2 51 58.8
ClCG10G005250 Citrullus lanatus HOM05D000399 ORTHO05D000304 1.2e-11 73.2 58 51.7
Lsat_1_v5_gn_7_109260 Lactuca sativa HOM05D000399 ORTHO05D000304 1.2e-11 73.2 63 47.6
Ah.03g148780 Amaranthus hybridus HOM05D000399 ORTHO05D000304 2.1e-11 72.4 58 55.2
AUR62020392 Chenopodium quinoa HOM05D000399 ORTHO05D000304 2.1e-11 72.4 60 53.3
PSO675G6810 Papaver somniferum HOM05D000399 ORTHO05D000304 2.1e-11 72.4 61 50.8
EL10Ac4g07760 Beta vulgaris HOM05D000399 ORTHO05D000304 2.7e-11 72.0 60 55.0
ECA236G2771 Erigeron canadensis HOM05D000399 ORTHO05D000304 2.7e-11 72.0 62 53.2
PSO541G6031 Papaver somniferum HOM05D000399 ORTHO05D000304 2.7e-11 72.0 61 50.8
QL08p006924 Quercus lobata HOM05D000399 ORTHO05D000304 2.7e-11 72.0 74 44.6
QL09p024268 Quercus lobata HOM05D000399 ORTHO05D000304 2.7e-11 72.0 74 44.6
CANSAT01G2756 Cannabis sativa HOM05D000399 ORTHO05D000304 4.6e-11 71.2 54 55.6
Lsat_1_v5_gn_3_14921 Lactuca sativa HOM05D000399 ORTHO05D000304 4.6e-11 71.2 86 39.5
Oeu005523.2 Olea europaea HOM05D000399 ORTHO05D000304 4.6e-11 71.2 60 51.7
vmacro09696 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 4.6e-11 71.2 66 45.5
QL08p006916 Quercus lobata HOM05D000399 ORTHO05D000304 6.0e-11 70.9 65 47.7
QL09p024256 Quercus lobata HOM05D000399 ORTHO05D000304 6.0e-11 70.9 65 47.7
RhsimUnG0248400 Rhododendron simsii HOM05D000399 ORTHO05D000304 6.0e-11 70.9 66 47.0
TAR624G0323 Trochodendron aralioides HOM05D000399 ORTHO05D000304 6.0e-11 70.9 54 51.9
MBI10_g29392_MAGBIO Magnolia biondii HOM05D000399 ORTHO05D000304 7.8e-11 70.5 59 54.2
Cfa020304 Carpinus fangiana HOM05D000399 ORTHO05D000304 1.0e-10 70.1 61 50.8
Haze_09717 Corylus avellana HOM05D000399 ORTHO05D000304 1.0e-10 70.1 61 50.8
ECA248G1950 Erigeron canadensis HOM05D000399 ORTHO05D000304 1.3e-10 69.7 60 55.0
CsaV3_4G013380 Cucumis sativus L. HOM05D000399 ORTHO05D000304 1.7e-10 69.3 58 50.0
SGA_v2.0_scaffold36G14385 Striga asiatica HOM05D000399 ORTHO05D000304 1.7e-10 69.3 55 49.1
AUR62015825 Chenopodium quinoa HOM05D000030 ORTHO05D000009 2.3e-10 68.9 56 51.8
QL08p008192 Quercus lobata HOM05D000399 ORTHO05D000304 2.3e-10 68.9 65 47.7
vmacro17469 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 3.0e-10 68.6 54 59.3
MELO3C014194.2 Cucumis melo HOM05D000399 ORTHO05D000304 3.9e-10 68.2 58 50.0
CsaV3_3G004960 Cucumis sativus L. HOM05D000399 ORTHO05D000304 3.9e-10 68.2 58 50.0
HanXRQChr17g0546431 Helianthus annuus HOM05D000399 ORTHO05D000304 5.1e-10 67.8 62 48.4
MD03G1196200 Malus domestica HOM05D000399 ORTHO05D000304 5.1e-10 67.8 54 51.9
PGR083G1485 Punica granatum HOM05D000399 ORTHO05D000304 5.1e-10 67.8 54 57.4
Hund23225 Selenicereus undatus HOM05D000399 ORTHO05D000304 5.1e-10 67.8 54 53.7
Rhsim13G0151000 Rhododendron simsii HOM05D000399 ORTHO05D000304 8.7e-10 67.0 55 58.2
Sed0015579 Sechium edule HOM05D000399 ORTHO05D000304 8.7e-10 67.0 62 46.8
Hund23862 Selenicereus undatus HOM05D000399 ORTHO05D000304 8.7e-10 67.0 43 62.8
QL05p059181 Quercus lobata HOM05D000399 ORTHO05D000304 1.1e-09 66.6 74 43.2
Sed0023956 Sechium edule HOM05D000399 ORTHO05D000304 1.1e-09 66.6 47 57.4
Duzib213G0551 Durio zibethinus HOM05D000399 ORTHO05D000304 1.5e-09 66.2 54 50.0
Eucgr.F00717 Eucalyptus grandis HOM05D000399 ORTHO05D000304 1.5e-09 66.2 59 50.8
Prupe.4G219200 Prunus persica HOM05D000399 ORTHO05D000304 1.5e-09 66.2 61 44.3
Phvul.008G269800 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 1.9e-09 65.9 45 55.6
Aa31LG8G7230 Aethionema arabicum HOM05D000399 ORTHO05D000304 2.5e-09 65.5 64 50.0
Cpa.g.sc12.267 Carica papaya HOM05D000399 ORTHO05D000304 3.3e-09 65.1 58 46.6
AUR62020393 Chenopodium quinoa HOM05D000399 ORTHO05D000304 3.3e-09 65.1 67 43.3
Glyma.14G021600 Glycine max HOM05D000399 ORTHO05D000304 3.3e-09 65.1 74 39.2
Lsat_1_v5_gn_7_114480 Lactuca sativa HOM05D000399 ORTHO05D000304 3.3e-09 65.1 54 50.0
COL.COLO4_09700 Corchorus olitorius HOM05D001348 ORTHO05D000304 4.3e-09 64.7 54 46.3
Gohir.A04G012700 Gossypium hirsutum HOM05D000399 ORTHO05D000304 4.3e-09 64.7 62 41.9
Gohir.D05G373200 Gossypium hirsutum HOM05D000399 ORTHO05D000304 4.3e-09 64.7 62 41.9
Gorai.009G441900 Gossypium raimondii HOM05D000399 ORTHO05D000304 4.3e-09 64.7 62 41.9
VMungo1309G1448 Vigna mungo HOM05D000399 ORTHO05D000304 5.6e-09 64.3 45 62.2
Prupe.4G219400 Prunus persica HOM05D000399 ORTHO05D000304 7.3e-09 63.9 61 42.6
MD11G1212500 Malus domestica HOM05D000399 ORTHO05D000304 9.6e-09 63.5 54 50.0
Thecc.07G031500 Theobroma cacao HOM05D000399 ORTHO05D000304 1.3e-08 63.2 54 50.0
Aqoxy4G01902 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 2.1e-08 62.4 40 67.5
VMungo0647G2567 Vigna mungo HOM05D000399 ORTHO05D000304 2.1e-08 62.4 70 40.0
EL10Ac4g07761 Beta vulgaris HOM05D000399 ORTHO05D000304 4.8e-08 61.2 74 39.2
Ca_06337_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 4.8e-08 61.2 58 46.6
DCAR_016850 Daucus carota HOM05D000399 ORTHO05D000304 4.8e-08 61.2 89 33.7
THA.LOC104817859 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 4.8e-08 61.2 58 46.6
BcaB06g26107 Brassica carinata HOM05D000399 ORTHO05D000304 1.4e-07 59.7 56 50.0
BcaC01g01692 Brassica carinata HOM05D000399 ORTHO05D000304 1.8e-07 59.3 59 44.1
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 1.8e-07 59.3 59 44.1
HPP92_005298 Vanilla planifolia HOM05D000399 ORTHO05D000304 1.8e-07 59.3 58 44.8
RcHm_v2.0_Chr5g0040931 Rosa chinensis HOM05D000399 ORTHO05D000304 3.1e-07 58.5 58 41.4
Psat2g012440 Pisum sativum HOM05D000399 ORTHO05D000304 5.3e-07 57.8 61 39.3
A05p28480 Brassica napus HOM05D000399 ORTHO05D000304 6.9e-07 57.4 56 46.4
BraA05t21727Z Brassica rapa HOM05D000399 ORTHO05D000304 6.9e-07 57.4 56 46.4
Lalb_Chr04g0248271 Lupinus albus HOM05D000399 ORTHO05D000304 6.9e-07 57.4 58 41.4
Medtr8g058930 Medicago truncatula HOM05D000399 ORTHO05D000304 6.9e-07 57.4 58 44.8
MELO3C014193.2 Cucumis melo HOM05D000399 ORTHO05D000304 9.0e-07 57.0 47 51.1
TAR629G3020 Trochodendron aralioides HOM05D000399 ORTHO05D000304 1.2e-06 56.6 55 47.3
Zm00001eb346320 Zea mays HOM05D000399 ORTHO05D000304 1.5e-06 56.2 58 43.1
AL3G34140 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 2.0e-06 55.8 55 45.5
QL08p008278 Quercus lobata HOM05D000399 ORTHO05D000304 2.0e-06 55.8 60 48.3
arahy.Tifrunner.gnm1.ann1.U657KI Arachis hypogaea HOM05D000399 ORTHO05D000304 3.4e-06 55.1 58 41.4
Carub.0008s0303 Capsella rubella HOM05D000399 ORTHO05D000304 3.4e-06 55.1 56 46.4
TPR.G10756 Trifolium pratense HOM05D000399 ORTHO05D000304 3.4e-06 55.1 59 37.3
BcaC05g28326 Brassica carinata HOM05D000399 ORTHO05D000304 4.4e-06 54.7 56 42.9
C05p43940 Brassica napus HOM05D000399 ORTHO05D000304 4.4e-06 54.7 56 42.9
BolC5t33112H Brassica oleracea HOM05D000399 ORTHO05D000304 4.4e-06 54.7 56 42.9
LjContig00272g0000787 Lotus japonicus HOM05D000399 ORTHO05D000304 4.4e-06 54.7 47 46.8
MD11G1212400 Malus domestica HOM05D000399 ORTHO05D000304 4.4e-06 54.7 43 53.5
QL08p008239 Quercus lobata HOM05D000399 ORTHO05D000304 4.4e-06 54.7 65 40.0
Carub.0008s0304 Capsella rubella HOM05D000399 ORTHO05D000304 7.6e-06 53.9 66 39.4
Eucgr.F00718 Eucalyptus grandis HOM05D000399 ORTHO05D000304 9.9e-06 53.5 48 47.9
HPP92_008857 Vanilla planifolia HOM05D000399 ORTHO05D000304 9.9e-06 53.5 50 44.0


User provided reference genes

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