Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g033500 Solanum pennellii HOM05D008048 ORTHO05D010199 4.1e-159 564.7 289 100.0
PGSC0003DMG400017154 Solanum tuberosum HOM05D008048 ORTHO05D010199 3.5e-150 535.0 289 93.1
Peaxi162Scf00033g00292 Petunia axillaris HOM05D008048 ORTHO05D010199 1.0e-133 480.3 289 82.7
CAN.G220.87 Capsicum annuum HOM05D008048 ORTHO05D010199 3.6e-131 471.9 289 79.6
Nitab4.5_0002709g0050 Nicotiana tabacum HOM05D008048 ORTHO05D010199 1.3e-112 410.2 402 57.2
Hma1.2p1_0385F.1_g141480 Hydrangea macrophylla HOM05D008048 ORTHO05D010199 1.5e-84 317.0 288 55.2
TAR362G0870 Trochodendron aralioides HOM05D008048 ORTHO05D010199 7.4e-84 314.7 288 54.9
Haze_11446 Corylus avellana HOM05D008048 ORTHO05D010199 8.2e-83 311.2 288 55.6
Cfa014771 Carpinus fangiana HOM05D008048 ORTHO05D010199 1.4e-82 310.5 288 55.9
MSTRG.4161 Avicennia marina HOM05D008048 ORTHO05D010199 3.8e-80 302.4 289 55.0
Lsat_1_v5_gn_6_68700 Lactuca sativa HOM05D008048 ORTHO05D010199 2.5e-79 299.7 290 55.9
QL06p020732 Quercus lobata HOM05D008048 ORTHO05D010199 1.2e-78 297.4 287 54.7
SalBow3G4414 Salvia bowleyana HOM05D008048 ORTHO05D010199 7.9e-78 294.7 289 56.4
Sed0019169 Sechium edule HOM05D008048 ORTHO05D010199 1.0e-77 294.3 288 53.1
Nn1g02915 Nelumbo nucifera HOM05D008048 ORTHO05D010199 2.3e-77 293.1 288 52.4
Migut.G00487 Erythranthe guttata HOM05D008048 ORTHO05D010199 5.1e-77 292.0 289 52.2
Solyc09g090560.2 Solanum lycopersicum HOM05D008048 ORTHO05D010199 4.4e-76 288.9 148 99.3
Ciclev10005562m.g Citrus clementina HOM05D008048 ORTHO05D010199 9.7e-76 287.7 288 52.1
Dinv29814 Davidia involucrata HOM05D008048 ORTHO05D010199 9.7e-76 287.7 253 58.1
MD13G1219500 Malus domestica HOM05D008048 ORTHO05D010199 1.3e-75 287.3 288 52.8
Prupe.1G046300 Prunus persica HOM05D008048 ORTHO05D010199 2.2e-75 286.6 288 54.2
Sabra08G0130700 Salix brachista HOM05D008048 ORTHO05D010199 3.7e-75 285.8 289 51.9
CAN.G220.88 Capsicum annuum HOM05D008048 ORTHO05D010199 6.3e-75 285.0 172 84.3
Atru.chr4.1935 Acer truncatum HOM05D008048 ORTHO05D010199 1.1e-74 284.3 285 52.3
MELO3C023035.2 Cucumis melo HOM05D008048 ORTHO05D010199 1.4e-74 283.9 288 51.7
Potri.010G067000 Populus trichocarpa HOM05D008048 ORTHO05D010199 2.4e-74 283.1 289 50.5
Potri.008G170900 Populus trichocarpa HOM05D008048 ORTHO05D010199 7.0e-74 281.6 289 50.2
Sc25g0003600 Simmondsia chinensis HOM05D008048 ORTHO05D010199 1.2e-73 280.8 289 51.9
CsaV3_2G012520 Cucumis sativus L. HOM05D008048 ORTHO05D010199 2.6e-73 279.6 288 51.4
RcHm_v2.0_Chr4g0394961 Rosa chinensis HOM05D008048 ORTHO05D010199 7.7e-73 278.1 292 54.5
Sabra10G0040500 Salix brachista HOM05D008048 ORTHO05D010199 1.0e-72 277.7 289 49.8
Ah.04g155360 Amaranthus hybridus HOM05D008048 ORTHO05D010199 1.3e-72 277.3 288 50.7
Actinidia20832 Actinidia chinensis HOM05D008048 ORTHO05D010199 6.5e-72 275.0 261 55.6
Lalb_Chr19g0128481 Lupinus albus HOM05D008048 ORTHO05D010199 4.2e-71 272.3 291 51.9
COL.COLO4_15948 Corchorus olitorius HOM05D008048 ORTHO05D010199 7.2e-71 271.6 288 50.0
Psat6g106440 Pisum sativum HOM05D008048 ORTHO05D010199 1.0e-69 267.7 276 51.1
VMungo0720G0410 Vigna mungo HOM05D008048 ORTHO05D010199 1.4e-69 267.3 290 49.3
AUR62002183 Chenopodium quinoa HOM05D008048 ORTHO05D010199 3.9e-69 265.8 296 48.0
MD16G1225000 Malus domestica HOM05D008048 ORTHO05D010199 3.3e-68 262.7 288 51.4
Phvul.007G271100 Phaseolus vulgaris HOM05D008048 ORTHO05D010199 2.2e-67 260.0 290 50.7
Manes.15G044600 Manihot esculenta HOM05D008048 ORTHO05D010199 4.8e-67 258.8 289 46.7
Duzib151G0082 Durio zibethinus HOM05D008048 ORTHO05D010199 1.4e-66 257.3 288 47.2
Aqoxy5G00167 Aquilegia oxysepala HOM05D008048 ORTHO05D010199 2.4e-66 256.5 291 49.1
Medtr1g045060 Medicago truncatula HOM05D008048 ORTHO05D010199 5.3e-66 255.4 290 49.0
Gohir.A01G025700 Gossypium hirsutum HOM05D008048 ORTHO05D010199 7.0e-66 255.0 289 47.1
TPR.G28751 Trifolium pratense HOM05D008048 ORTHO05D010199 7.0e-66 255.0 273 50.5
FAN17G0666 Fragaria x ananassa HOM05D008048 ORTHO05D010199 9.1e-66 254.6 293 50.9
Gorai.002G026300 Gossypium raimondii HOM05D008048 ORTHO05D010199 9.1e-66 254.6 289 47.1
MBI07_g18713_MAGBIO Magnolia biondii HOM05D008048 ORTHO05D010199 1.3e-64 250.8 288 45.5
TWI73G0695 Tripterygium wilfordii HOM05D008048 ORTHO05D010199 1.3e-64 250.8 295 49.2
FvH4_4g04390 Fragaria vesca HOM05D008048 ORTHO05D010199 5.0e-64 248.8 276 50.7
Gohir.D01G023415 Gossypium hirsutum HOM05D008048 ORTHO05D010199 6.5e-64 248.4 289 46.4
PGR004G1266 Punica granatum HOM05D008048 ORTHO05D010199 8.5e-64 248.1 294 49.0
Rhsim04G0173500 Rhododendron simsii HOM05D008048 ORTHO05D010199 1.6e-62 243.8 243 51.0
FAN22G2321 Fragaria x ananassa HOM05D008048 ORTHO05D010199 2.1e-62 243.4 293 49.1
Lj6g0004811 Lotus japonicus HOM05D008048 ORTHO05D010199 6.8e-61 238.4 291 48.5
Oeu002289.1 Olea europaea HOM05D008048 ORTHO05D010199 6.8e-61 238.4 224 54.9
SGA_v2.0_scaffold67G22704 Striga asiatica HOM05D008048 ORTHO05D010199 1.2e-60 237.7 226 53.1
Glyma.20G086000 Glycine max HOM05D008048 ORTHO05D010199 6.1e-54 215.3 266 47.4
CiPaw.02G108000 Carya illinoinensis HOM05D008048 ORTHO05D010199 2.2e-51 206.8 288 44.4
Thecc.04G262100 Theobroma cacao HOM05D008048 ORTHO05D010199 9.1e-50 201.4 223 50.7
Lj6P622T54 Lonicera japonica HOM05D008048 ORTHO05D010199 8.0e-46 188.3 159 56.6
DCAR_027338 Daucus carota HOM05D008048 ORTHO05D010199 1.2e-41 174.5 187 48.7
Cpa.g.sc44.13 Carica papaya HOM05D008048 ORTHO05D010199 2.7e-41 173.3 183 48.6
GSVIVG01027901001 Vitis vinifera HOM05D008048 ORTHO05D010199 3.3e-31 139.8 170 45.9
ATR0736G121 Amborella trichopoda HOM05D008048 ORTHO05D010199 5.2e-29 132.5 173 43.4
FAN12G0723 Fragaria x ananassa HOM05D008048 ORTHO05D010199 3.7e-27 126.3 151 49.0
FAN12G2845 Fragaria x ananassa HOM05D008048 ORTHO05D010199 3.7e-27 126.3 151 49.0
EL10Ac3g04955 Beta vulgaris HOM05D008048 ORTHO05D010199 8.3e-27 125.2 111 54.1
Mapoly0103s0043 Marchantia polymorpha HOM05D007245 ORTHO05D009049 9.2e-26 121.7 301 31.6
SEGI_38415 Sequoiadendron giganteum HOM05D007245 ORTHO05D009049 2.7e-25 120.2 262 34.0
FAN12G1007 Fragaria x ananassa HOM05D008048 ORTHO05D010199 6.6e-24 115.5 107 57.9
FAN12G3146 Fragaria x ananassa HOM05D008048 ORTHO05D010199 6.6e-24 115.5 107 57.9
Thecc.04G050800 Theobroma cacao HOM05D007245 ORTHO05D009049 6.6e-24 115.5 260 30.8
Gohir.A11G062100 Gossypium hirsutum HOM05D007245 ORTHO05D009049 2.5e-23 113.6 273 32.2
Gorai.007G071400 Gossypium raimondii HOM05D007245 ORTHO05D009049 3.3e-23 113.2 247 34.0
Gohir.D11G065900 Gossypium hirsutum HOM05D007245 ORTHO05D009049 7.3e-23 112.1 247 34.0
TAR629G1424 Trochodendron aralioides HOM05D007245 ORTHO05D009049 1.2e-22 111.3 272 31.2
Duzib147G1224 Durio zibethinus HOM05D007245 ORTHO05D009049 6.2e-22 109.0 260 30.0
CiPaw.03G000500 Carya illinoinensis HOM05D007245 ORTHO05D009049 2.3e-21 107.1 239 33.5
Oeu050155.1 Olea europaea HOM05D007245 ORTHO05D009049 3.1e-21 106.7 268 29.5
Manes.11G073800 Manihot esculenta HOM05D007245 ORTHO05D009049 4.0e-21 106.3 255 30.2
AL6G24530 Arabidopsis lyrata HOM05D007245 ORTHO05D009049 6.8e-21 105.5 263 28.9
CAN.G1489.19 Capsicum annuum HOM05D007245 ORTHO05D009049 6.8e-21 105.5 272 28.7
PGSC0003DMG400030518 Solanum tuberosum HOM05D007245 ORTHO05D009049 6.8e-21 105.5 256 28.9
Dinv33262 Davidia involucrata HOM05D007245 ORTHO05D009049 8.9e-21 105.1 261 30.7
Sopen05g004430 Solanum pennellii HOM05D007245 ORTHO05D009049 8.9e-21 105.1 252 29.0
Hma1.2p1_0421F.1_g149920 Hydrangea macrophylla HOM05D007245 ORTHO05D009049 1.2e-20 104.8 262 31.3
Nn3g16217 Nelumbo nucifera HOM05D007245 ORTHO05D009049 1.2e-20 104.8 272 29.0
CARHR199540 Cardamine hirsuta HOM05D007245 ORTHO05D009049 1.5e-20 104.4 260 30.0
TAR374G0050 Trochodendron aralioides HOM05D000179 ORTHO05D009049 1.5e-20 104.4 245 30.2
Duzib187G0347 Durio zibethinus HOM05D007245 ORTHO05D009049 2.0e-20 104.0 255 30.6
Thhalv10014197m.g Eutrema salsugineum HOM05D007245 ORTHO05D009049 2.0e-20 104.0 252 30.2
AT5G13890 Arabidopsis thaliana HOM05D007245 ORTHO05D009049 2.6e-20 103.6 257 29.6
Sp6g30110 Schrenkiella parvula HOM05D007245 ORTHO05D009049 3.4e-20 103.2 252 31.0
THA.LOC104822428 Tarenaya hassleriana HOM05D007245 ORTHO05D009049 5.8e-20 102.4 261 28.7
Actinidia37711 Actinidia chinensis HOM05D007245 ORTHO05D009049 7.6e-20 102.1 254 30.7
Carub.0006s1208 Capsella rubella HOM05D007245 ORTHO05D009049 9.9e-20 101.7 256 29.7
Dinv25610 Davidia involucrata HOM05D007245 ORTHO05D009049 1.7e-19 100.9 265 31.3
ATR0582G351 Amborella trichopoda HOM05D007245 ORTHO05D009049 2.2e-19 100.5 261 29.1
Sed0008898 Sechium edule HOM05D007245 ORTHO05D009049 2.9e-19 100.1 264 28.4
Aa31LG11G15470 Aethionema arabicum HOM05D007245 ORTHO05D009049 4.9e-19 99.4 253 30.8
HanXRQChr09g0245251 Helianthus annuus HOM05D007245 ORTHO05D009049 8.3e-19 98.6 245 29.4
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 1.1e-18 98.2 249 30.9
Cc09_g07550 Coffea canephora HOM05D007245 ORTHO05D009049 1.4e-18 97.8 257 30.4
QL02p068579 Quercus lobata HOM05D007245 ORTHO05D009049 1.4e-18 97.8 251 30.3
SGA_v2.0_scaffold47G17641 Striga asiatica HOM05D007245 ORTHO05D009049 1.4e-18 97.8 266 27.8
Atru.chr6.2722 Acer truncatum HOM05D007245 ORTHO05D009049 1.9e-18 97.4 255 29.0
MSTRG.15573 Avicennia marina HOM05D007245 ORTHO05D009049 1.9e-18 97.4 245 27.3
MBI11_g03703_MAGBIO Magnolia biondii HOM05D007245 ORTHO05D009049 1.9e-18 97.4 270 31.1
Pp3c8_3270 Physcomitrium patens HOM05D007245 ORTHO05D009049 1.9e-18 97.4 265 25.7
Peaxi162Scf00950g00032 Petunia axillaris HOM05D007245 ORTHO05D009049 2.4e-18 97.1 257 28.0
Potri.002G237200 Populus trichocarpa HOM05D007245 ORTHO05D009049 3.2e-18 96.7 253 28.9
CSS0018621 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 4.1e-18 96.3 269 27.9
Ciclev10016068m.g Citrus clementina HOM05D007245 ORTHO05D009049 4.1e-18 96.3 247 31.2
Haze_14957 Corylus avellana HOM05D007245 ORTHO05D009049 4.1e-18 96.3 248 29.0
Prupe.7G011800 Prunus persica HOM05D007245 ORTHO05D009049 4.1e-18 96.3 268 28.0
Sed0013025 Sechium edule HOM05D007245 ORTHO05D009049 4.1e-18 96.3 270 27.0
CDE06G2711 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 5.4e-18 95.9 284 30.3
Ca_11923_v3 Cicer arietinum L. HOM05D008048 ORTHO05D010199 5.4e-18 95.9 109 42.2
BcaC04g24245 Brassica carinata HOM05D007245 ORTHO05D009049 7.1e-18 95.5 253 30.8
CsaV3_3G020030 Cucumis sativus L. HOM05D007245 ORTHO05D009049 9.2e-18 95.1 285 26.3
Lj7P619T29 Lonicera japonica HOM05D007245 ORTHO05D009049 9.2e-18 95.1 286 27.6
CSS0002235 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 1.2e-17 94.7 250 28.8
BcaC04g19069 Brassica carinata HOM05D007245 ORTHO05D009049 1.6e-17 94.4 250 30.0
ClCG05G012490 Citrullus lanatus HOM05D007245 ORTHO05D009049 2.1e-17 94.0 281 26.7
DCAR_000961 Daucus carota HOM05D007245 ORTHO05D009049 2.1e-17 94.0 253 29.6
FvH4_6g31080 Fragaria vesca HOM05D007245 ORTHO05D009049 2.1e-17 94.0 270 28.9
RcHm_v2.0_Chr2g0176701 Rosa chinensis HOM05D007245 ORTHO05D009049 2.7e-17 93.6 264 27.7
unitig_0.g2407 Utricularia gibba HOM05D007245 ORTHO05D009049 3.5e-17 93.2 230 29.6
FAN05G2831 Fragaria x ananassa HOM05D007245 ORTHO05D009049 4.6e-17 92.8 270 28.5
PSO017G6414 Papaver somniferum HOM05D007245 ORTHO05D009049 4.6e-17 92.8 259 29.0
PSO478G0086 Papaver somniferum HOM05D007245 ORTHO05D009049 4.6e-17 92.8 256 29.3
A10p24470 Brassica napus HOM05D007245 ORTHO05D009049 6.0e-17 92.4 253 28.9
C09p63210 Brassica napus HOM05D007245 ORTHO05D009049 6.0e-17 92.4 250 29.6
BolC9t59157H Brassica oleracea HOM05D007245 ORTHO05D009049 6.0e-17 92.4 250 29.6
Lalb_Chr24g0402921 Lupinus albus HOM05D007245 ORTHO05D009049 6.0e-17 92.4 260 29.6
Nitab4.5_0005095g0010 Nicotiana tabacum HOM05D007245 ORTHO05D009049 6.0e-17 92.4 241 29.9
BraA10t44512Z Brassica rapa HOM05D007245 ORTHO05D009049 7.8e-17 92.0 253 28.9
MELO3C014761.2 Cucumis melo HOM05D007245 ORTHO05D009049 7.8e-17 92.0 281 26.3
Glyma.19G106200 Glycine max HOM05D007245 ORTHO05D009049 1.0e-16 91.7 263 30.4
Lsat_1_v5_gn_2_60460 Lactuca sativa HOM05D007245 ORTHO05D009049 1.0e-16 91.7 268 28.0
SHI23073 Sapria himalayana HOM05D000105 ORTHO05D000023 1.0e-16 91.7 274 28.8
SalBow7G3959 Salvia bowleyana HOM05D007245 ORTHO05D009049 1.3e-16 91.3 248 27.4
vmacro18400 Vaccinium macrocarpon HOM05D007245 ORTHO05D009049 1.3e-16 91.3 269 29.0
TWI32G1326 Tripterygium wilfordii HOM05D007245 ORTHO05D009049 1.7e-16 90.9 263 27.4
MD17G1004200 Malus domestica HOM05D007245 ORTHO05D009049 2.3e-16 90.5 270 27.8
Oeu045577.1 Olea europaea HOM05D007245 ORTHO05D009049 2.3e-16 90.5 262 27.5
PGR142G1730 Punica granatum HOM05D007245 ORTHO05D009049 3.9e-16 89.7 275 27.3
Rhsim08G0037800 Rhododendron simsii HOM05D007245 ORTHO05D009049 5.1e-16 89.4 290 29.3
Nitab4.5_0005411g0120 Nicotiana tabacum HOM05D007245 ORTHO05D009049 6.6e-16 89.0 252 28.6
Cpa.g.sc70.41 Carica papaya HOM05D007245 ORTHO05D009049 8.6e-16 88.6 271 27.3
Migut.K01486 Erythranthe guttata HOM05D007245 ORTHO05D009049 8.6e-16 88.6 240 26.7
Pp3c10_19560 Physcomitrium patens HOM05D007245 ORTHO05D009049 1.5e-15 87.8 287 26.1
SMO329G0038 Selaginella moellendorffii HOM05D007245 ORTHO05D009049 2.5e-15 87.0 294 26.5
MD09G1001100 Malus domestica HOM05D007245 ORTHO05D009049 4.3e-15 86.3 260 26.9
AagrBONN_evm.TU.Sc2ySwM_369.440 Anthoceros agrestis HOM05D007245 ORTHO05D009049 9.6e-15 85.1 277 30.7
Aqoxy2G01225 Aquilegia oxysepala HOM05D007245 ORTHO05D009049 9.6e-15 85.1 279 24.0
ECA238G1127 Erigeron canadensis HOM05D007245 ORTHO05D009049 9.6e-15 85.1 249 26.9
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 1.2e-14 84.7 103 45.6
TPR.G31664 Trifolium pratense HOM05D007245 ORTHO05D009049 1.2e-14 84.7 252 27.8
CANSAT64G0979 Cannabis sativa HOM05D007245 ORTHO05D009049 2.1e-14 84.0 270 28.1
Sc03g0005330 Simmondsia chinensis HOM05D007245 ORTHO05D009049 2.8e-14 83.6 253 28.9
SGA_v2.0_scaffold34G13684 Striga asiatica HOM05D007245 ORTHO05D009049 4.7e-14 82.8 266 27.4
Pp3c12_14270 Physcomitrium patens HOM05D007245 ORTHO05D009049 8.1e-14 82.0 213 28.2
Lj1g0022763 Lotus japonicus HOM05D007245 ORTHO05D009049 1.4e-13 81.3 252 27.4
RcHm_v2.0_Chr2g0137761 Rosa chinensis HOM05D007245 ORTHO05D009049 1.4e-13 81.3 269 27.5
CDE02G4767 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 4.4e-12 76.3 278 28.4
Medtr7g084610 Medicago truncatula HOM05D007245 ORTHO05D009049 2.9e-11 73.6 241 27.8
Sabra02G0180800 Salix brachista HOM05D007245 ORTHO05D009049 3.8e-11 73.2 251 27.1
Phvul.001G099200 Phaseolus vulgaris HOM05D007245 ORTHO05D009049 6.4e-11 72.4 269 27.9
Pp3c4_3800 Physcomitrium patens HOM05D007245 ORTHO05D009049 3.2e-10 70.1 180 25.6
Ca_08230_v3 Cicer arietinum L. HOM05D007245 ORTHO05D009049 7.1e-10 68.9 96 38.5
TAR365G0106 Trochodendron aralioides HOM05D008048 ORTHO05D010199 9.3e-10 68.6 111 36.0
Manes.04G095000 Manihot esculenta HOM05D007245 ORTHO05D009049 1.2e-09 68.2 260 24.6
Psat3g091920 Pisum sativum HOM05D007245 ORTHO05D009049 1.2e-09 68.2 84 40.5
VMungo1383G3535 Vigna mungo HOM05D007245 ORTHO05D009049 3.5e-09 66.6 269 27.1
AUR62042868 Chenopodium quinoa HOM05D007245 ORTHO05D009049 1.3e-08 64.7 89 36.0
HPP92_006441 Vanilla planifolia HOM05D007245 ORTHO05D009049 6.2e-06 55.8 207 26.1


User provided reference genes

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