Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 4.2e-81 304.7 158 100.0
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 2.1e-80 302.4 158 99.4
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 5.3e-76 287.7 158 93.7
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.4e-75 285.0 158 93.0
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 8.5e-58 227.3 159 77.4
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 5.5e-57 224.6 171 74.3
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 2.8e-53 212.2 154 73.4
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 4.8e-53 211.5 155 72.9
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 6.3e-53 211.1 159 73.0
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 3.1e-52 208.8 154 72.7
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 1.6e-51 206.5 154 70.8
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.0e-51 206.1 159 70.4
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 3.5e-51 205.3 159 70.4
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 5.9e-51 204.5 161 70.2
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 1.1e-49 200.3 154 70.8
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.2e-48 196.8 159 67.3
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 4.7e-48 194.9 157 69.4
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 4.7e-48 194.9 157 69.4
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 8.0e-48 194.1 157 67.5
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 8.0e-48 194.1 157 67.5
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.0e-47 193.7 158 67.1
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.0e-47 193.7 159 66.7
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 1.0e-47 193.7 157 68.8
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 3.0e-47 192.2 154 68.2
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 4.0e-47 191.8 157 68.8
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.8e-47 191.0 157 66.9
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.5e-46 189.9 157 65.6
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 2.0e-46 189.5 154 68.8
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 2.6e-46 189.1 153 69.9
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 2.6e-46 189.1 157 66.2
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 3.4e-46 188.7 157 65.6
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 3.4e-46 188.7 158 66.5
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 5.7e-46 188.0 154 66.9
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 7.5e-46 187.6 157 65.0
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 2.2e-45 186.0 157 65.0
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 2.8e-45 185.7 144 68.8
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 3.7e-45 185.3 157 67.5
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 4.8e-45 184.9 157 65.0
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 4.8e-45 184.9 157 64.3
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 6.3e-45 184.5 157 63.1
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 6.3e-45 184.5 161 63.4
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 6.3e-45 184.5 155 65.2
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 8.3e-45 184.1 145 69.0
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 8.3e-45 184.1 157 63.1
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 8.3e-45 184.1 154 65.6
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 1.4e-44 183.3 157 64.3
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.8e-44 183.0 157 65.0
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 3.1e-44 182.2 157 64.3
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 4.1e-44 181.8 152 65.1
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 7.0e-44 181.0 150 66.7
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 1.6e-43 179.9 157 65.0
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 2.0e-43 179.5 154 64.3
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 3.5e-43 178.7 143 67.1
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 4.5e-43 178.3 154 66.2
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 7.7e-43 177.6 140 67.9
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 7.7e-43 177.6 154 64.3
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 1.3e-42 176.8 153 65.4
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 1.3e-42 176.8 152 63.8
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 1.3e-42 176.8 161 65.8
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 1.3e-42 176.8 157 60.5
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 1.7e-42 176.4 154 63.0
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 2.9e-42 175.6 146 65.1
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 5.0e-42 174.9 161 65.2
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 6.5e-42 174.5 144 68.1
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 8.5e-42 174.1 153 65.4
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.5e-41 173.3 148 66.9
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 1.5e-41 173.3 158 63.3
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 1.9e-41 172.9 154 66.2
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 1.9e-41 172.9 157 63.1
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 2.5e-41 172.6 154 64.3
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.5e-41 172.6 148 66.9
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 2.5e-41 172.6 157 63.1
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 4.2e-41 171.8 146 65.1
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 7.2e-41 171.0 157 63.1
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 9.5e-41 170.6 158 62.0
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 3.6e-40 168.7 159 61.6
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 4.7e-40 168.3 158 61.4
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 6.1e-40 167.9 144 66.7
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.0e-39 167.2 158 62.0
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 1.0e-39 167.2 156 62.8
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 1.4e-39 166.8 144 63.9
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.8e-39 166.4 148 62.8
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.8e-39 166.4 148 62.8
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.3e-39 166.0 155 61.9
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.3e-39 166.0 155 61.9
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 3.0e-39 165.6 155 62.6
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 3.0e-39 165.6 133 66.9
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 4.0e-39 165.2 154 61.7
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.0e-39 165.2 155 61.9
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 4.0e-39 165.2 150 64.0
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 6.8e-39 164.5 172 57.6
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 6.8e-39 164.5 145 65.5
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 8.8e-39 164.1 154 62.3
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 8.8e-39 164.1 157 60.5
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 1.5e-38 163.3 92 92.4
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 2.6e-38 162.5 150 62.7
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 5.7e-38 161.4 154 61.0
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.3e-37 160.2 132 66.7
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.3e-37 160.2 154 61.0
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 1.3e-37 160.2 154 61.0
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 1.3e-37 160.2 154 61.0
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 1.3e-37 160.2 154 59.1
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 3.7e-37 158.7 154 61.7
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.7e-37 158.7 154 60.4
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 6.3e-37 157.9 182 56.0
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.1e-36 157.1 159 59.1
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 2.4e-36 156.0 157 57.3
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.6e-35 153.3 156 57.1
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 2.7e-35 152.5 102 78.4
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 3.5e-35 152.1 192 51.6
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 4.5e-35 151.8 153 56.9
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 5.9e-35 151.4 153 56.9
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 1.0e-34 150.6 217 47.0
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.3e-34 150.2 154 60.4
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 1.7e-34 149.8 157 58.0
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 2.3e-34 149.4 129 65.9
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 2.3e-34 149.4 120 69.2
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 2.9e-34 149.1 152 57.9
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 6.6e-34 147.9 151 58.9
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 6.6e-34 147.9 151 58.9
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 6.6e-34 147.9 151 58.9
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 8.6e-34 147.5 112 70.5
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 8.6e-34 147.5 151 57.6
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 1.9e-33 146.4 154 58.4
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 5.6e-33 144.8 127 63.0
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.2e-32 143.7 153 56.9
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.6e-32 142.1 158 57.0
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 6.1e-32 141.4 154 57.1
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 1.0e-31 140.6 156 56.4
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.4e-31 140.2 144 56.2
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 4.0e-31 138.7 154 56.5
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 5.2e-31 138.3 154 57.1
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 6.8e-31 137.9 143 58.7
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.2e-30 137.1 125 62.4
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.5e-30 136.7 166 53.6
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 2.0e-30 136.3 153 55.6
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 2.6e-30 136.0 96 75.0
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 2.6e-30 136.0 156 53.2
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 4.4e-30 135.2 173 48.6
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 5.7e-30 134.8 122 60.7
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 5.7e-30 134.8 143 53.8
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 1.3e-29 133.7 184 46.7
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 1.3e-29 133.7 157 52.2
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.3e-29 133.7 155 54.8
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 2.2e-29 132.9 159 51.6
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.4e-28 130.2 108 66.7
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 3.2e-28 129.0 158 50.6
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 4.1e-28 128.6 140 55.7
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 5.4e-28 128.3 92 71.7
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 5.4e-28 128.3 145 53.8
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.6e-27 126.7 93 69.9
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.3e-26 123.6 113 62.8
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 3.0e-26 122.5 91 68.1
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 3.0e-26 122.5 124 58.1
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 3.9e-26 122.1 269 35.7
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.6e-26 121.3 94 70.2
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 3.3e-25 119.0 97 66.0
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 5.6e-25 118.2 176 47.7
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 9.5e-25 117.5 175 44.6
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.6e-24 116.7 93 65.6
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 3.6e-24 115.5 93 64.5
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 7.8e-19 97.8 157 43.9
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 4.3e-17 92.0 154 42.9
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 3.6e-16 89.0 75 60.0
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 8.1e-16 87.8 83 66.3
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 1.8e-15 86.7 85 60.0
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 7.5e-14 81.3 92 55.4
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.7e-13 80.1 60 65.0
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.2e-13 79.7 90 52.2
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 3.7e-13 79.0 82 51.2
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 1.6e-11 73.6 59 59.3
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 7.8e-11 71.2 63 61.9
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 4.3e-09 65.5 97 45.4
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 4.0e-07 58.9 78 44.9


User provided reference genes

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