Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 2.0e-141 506.1 337 100.0
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 4.5e-141 505.0 337 99.7
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 5.3e-134 481.5 324 99.1
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 7.2e-131 471.1 337 95.0
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.4e-113 413.7 348 85.6
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 5.2e-113 411.8 341 82.1
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 8.3e-111 404.4 330 86.7
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 9.8e-96 354.4 341 63.6
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 4.9e-95 352.1 341 63.9
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 3.0e-92 342.8 341 62.2
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 3.9e-92 342.4 346 62.4
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 5.1e-92 342.0 341 63.6
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 2.5e-91 339.7 343 62.7
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 1.2e-88 330.9 331 61.9
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 2.6e-88 329.7 349 60.2
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 2.6e-88 329.7 339 60.8
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 5.4e-86 322.0 341 66.6
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 1.2e-85 320.9 339 58.7
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 2.1e-85 320.1 347 62.2
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 3.3e-83 312.8 341 62.8
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 9.6e-83 311.2 339 59.6
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 9.6e-83 311.2 343 59.2
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 3.6e-82 309.3 350 57.1
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 4.7e-82 308.9 342 57.6
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 8.1e-82 308.1 341 58.1
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 8.1e-82 308.1 342 58.8
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 1.1e-81 307.8 340 58.8
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 2.4e-81 306.6 356 57.3
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 6.8e-81 305.1 341 59.5
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 6.8e-81 305.1 321 60.7
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.5e-80 303.9 348 56.3
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 7.6e-80 301.6 337 58.5
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 2.9e-79 299.7 293 62.1
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 2.9e-79 299.7 346 58.1
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 4.9e-79 298.9 338 58.0
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 8.4e-79 298.1 281 63.7
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.4e-78 297.4 330 58.2
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 5.4e-78 295.4 290 62.4
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 6.0e-77 292.0 366 56.6
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 7.8e-77 291.6 342 57.6
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 1.3e-76 290.8 354 56.8
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 8.7e-76 288.1 340 55.9
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 1.1e-75 287.7 306 58.5
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 1.3e-74 284.3 393 58.5
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 2.8e-74 283.1 341 56.9
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 2.6e-72 276.6 340 55.6
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 4.4e-72 275.8 327 55.4
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 1.3e-71 274.2 378 51.9
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.3e-71 274.2 341 54.5
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 6.4e-71 271.9 294 57.5
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 1.9e-70 270.4 352 52.3
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 2.4e-70 270.0 339 60.2
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 7.1e-70 268.5 341 54.8
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 9.3e-70 268.1 380 60.0
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 1.2e-69 267.7 338 53.6
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 1.0e-68 264.6 372 50.5
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 1.7e-68 263.8 372 50.3
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 1.7e-68 263.8 340 54.1
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 2.3e-68 263.5 336 53.9
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 3.9e-68 262.7 362 58.8
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 5.1e-68 262.3 304 67.1
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 5.1e-68 262.3 356 54.5
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 6.6e-68 261.9 327 54.1
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 3.3e-67 259.6 362 58.6
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 4.3e-67 259.2 308 58.1
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 5.6e-67 258.8 372 57.3
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 1.6e-66 257.3 201 72.6
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.8e-66 256.5 199 72.9
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 2.8e-66 256.5 334 53.9
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 3.6e-66 256.1 284 57.4
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.1e-65 254.6 340 53.2
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 2.4e-65 253.4 340 52.4
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 3.1e-65 253.1 354 51.1
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 5.3e-65 252.3 234 63.7
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 9.0e-65 251.5 351 53.3
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 1.2e-64 251.1 339 62.5
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 2.0e-64 250.4 296 57.1
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 3.4e-64 249.6 201 71.6
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 4.5e-64 249.2 339 54.0
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 4.5e-64 249.2 199 71.4
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 4.5e-64 249.2 343 64.1
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 7.6e-64 248.4 360 48.6
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 2.9e-63 246.5 307 53.1
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 3.8e-63 246.1 342 59.1
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 3.8e-63 246.1 342 59.1
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 4.9e-63 245.7 297 55.2
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 1.9e-62 243.8 296 58.4
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 3.2e-62 243.0 325 51.1
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 5.5e-62 242.3 337 59.1
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 9.3e-62 241.5 419 48.0
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 1.2e-61 241.1 346 48.0
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 1.6e-61 240.7 332 51.2
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 1.6e-61 240.7 345 50.1
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.6e-61 240.7 339 51.0
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 4.6e-61 239.2 200 68.5
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 4.6e-61 239.2 200 68.5
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 7.9e-61 238.4 342 51.5
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 2.3e-60 236.9 282 54.3
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.5e-59 233.4 304 52.6
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 4.3e-59 232.6 378 46.6
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 7.4e-59 231.9 336 50.9
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 1.8e-57 227.3 296 53.0
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 6.9e-57 225.3 304 51.3
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 4.5e-56 222.6 286 55.2
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 7.6e-56 221.9 275 59.6
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.0e-55 221.5 275 59.3
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 1.1e-54 218.0 395 44.8
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.9e-54 217.2 197 66.5
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 3.2e-54 216.5 344 48.0
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 1.2e-53 214.5 343 55.7
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 3.5e-53 213.0 260 53.5
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.3e-52 210.3 275 58.5
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 3.0e-52 209.9 288 51.4
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 6.7e-52 208.8 339 45.1
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 1.9e-51 207.2 290 65.2
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 3.3e-51 206.5 206 63.1
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 4.8e-50 202.6 292 58.6
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.4e-49 200.3 163 70.6
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 2.0e-48 197.2 189 61.9
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 1.7e-47 194.1 198 60.1
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 3.2e-46 189.9 193 59.1
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 3.0e-44 183.3 209 54.5
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 9.7e-43 178.3 214 55.6
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 1.2e-40 171.4 147 70.7
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 4.5e-40 169.5 205 53.7
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 7.7e-40 168.7 336 41.1
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 1.1e-38 164.9 338 40.2
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 2.0e-35 154.1 238 45.4
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 2.2e-34 150.6 428 35.0
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 6.9e-33 145.6 294 43.5
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 9.1e-33 145.2 351 35.6
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 2.4e-25 120.6 191 46.1
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 1.2e-24 118.2 136 50.7
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.2e-21 108.2 203 40.9
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 5.2e-20 102.8 170 40.6
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.3e-18 98.2 96 63.5
Atru.chr4.2281 Acer truncatum HOM05D000979 ORTHO05D003182 5.3e-17 92.8 93 62.4
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 1.7e-15 87.8 87 60.9
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 2.6e-11 73.9 206 35.9
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 7.7e-08 62.4 136 36.0
Gohir.D08G197400 Gossypium hirsutum HOM05D004913 ORTHO05D006150 6.5e-07 59.3 86 52.3
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 8.5e-07 58.9 59 61.0
Cre10.g452600 Chlamydomonas reinhardtii HOM05D004913 ORTHO05D006150 2.5e-06 57.4 210 29.0
Gohir.D03G068600 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.5e-06 57.4 86 51.2
Gorai.007G212000 Gossypium raimondii HOM05D004913 ORTHO05D006150 3.2e-06 57.0 86 51.2
Gorai.003G091900 Gossypium raimondii HOM05D004913 ORTHO05D006150 4.2e-06 56.6 86 51.2
Cpa.g.c45152 Carica papaya HOM05D004913 ORTHO05D006150 7.2e-06 55.8 88 51.1


User provided reference genes

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