Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 3.2e-153 545.0 275 100.0
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 5.1e-151 537.7 275 98.9
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 8.5e-130 467.2 267 89.1
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 5.5e-121 438.0 283 83.4
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 9.4e-121 437.2 221 98.2
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 2.3e-111 406.0 308 73.1
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 4.9e-109 398.3 280 76.8
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 1.3e-106 390.2 281 75.8
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 6.6e-106 387.9 276 74.3
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 5.5e-105 384.8 279 75.6
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 3.6e-104 382.1 278 75.2
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 2.3e-103 379.4 210 88.1
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 4.0e-103 378.6 285 72.6
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 6.8e-103 377.9 286 73.4
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 8.9e-103 377.5 286 73.4
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.5e-102 376.7 278 71.9
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 2.0e-102 376.3 212 88.7
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 4.4e-102 375.2 280 73.6
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 5.7e-102 374.8 271 73.4
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 5.7e-102 374.8 274 72.6
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 7.5e-102 374.4 271 74.5
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 9.8e-102 374.0 284 70.4
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 1.3e-101 373.6 277 72.9
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 2.2e-101 372.9 272 72.4
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 2.9e-101 372.5 288 70.5
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 4.9e-101 371.7 280 72.1
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 6.3e-101 371.3 281 71.9
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 1.4e-100 370.2 210 85.7
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 1.4e-100 370.2 264 74.2
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 1.4e-100 370.2 211 86.7
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 1.8e-100 369.8 281 71.2
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 2.4e-100 369.4 284 70.8
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 2.4e-100 369.4 261 73.6
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 3.2e-100 369.0 293 69.6
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 7.0e-100 367.9 283 70.7
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 7.0e-100 367.9 284 70.4
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 9.2e-100 367.5 222 82.0
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 9.2e-100 367.5 282 70.2
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 1.2e-99 367.1 286 70.3
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 2.0e-99 366.3 245 77.6
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 2.0e-99 366.3 282 71.3
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 2.0e-99 366.3 210 86.7
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 2.0e-99 366.3 214 84.6
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 2.7e-99 365.9 243 77.0
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 3.5e-99 365.5 284 70.8
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 3.5e-99 365.5 213 85.4
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 4.6e-99 365.2 228 79.4
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 4.6e-99 365.2 273 72.5
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 4.6e-99 365.2 268 72.0
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 4.6e-99 365.2 213 85.9
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 5.9e-99 364.8 284 70.4
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 5.9e-99 364.8 279 69.9
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 7.8e-99 364.4 279 69.2
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 7.8e-99 364.4 284 71.1
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 7.8e-99 364.4 213 85.0
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 7.8e-99 364.4 280 71.4
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 1.3e-98 363.6 213 85.4
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 1.3e-98 363.6 285 69.5
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 2.3e-98 362.8 207 85.5
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 2.3e-98 362.8 255 74.9
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 2.9e-98 362.5 235 80.4
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 2.9e-98 362.5 265 73.6
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 3.9e-98 362.1 235 78.7
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 6.6e-98 361.3 286 70.6
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 1.1e-97 360.5 219 83.1
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 1.5e-97 360.1 209 84.7
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 1.5e-97 360.1 209 84.7
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 1.5e-97 360.1 217 84.3
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.5e-97 360.1 204 85.3
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 1.9e-97 359.8 283 70.0
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 2.5e-97 359.4 288 69.8
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 3.3e-97 359.0 282 67.0
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 4.3e-97 358.6 233 78.5
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 4.3e-97 358.6 223 80.7
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 5.6e-97 358.2 254 73.6
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 7.3e-97 357.8 227 78.0
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 7.3e-97 357.8 209 84.7
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 7.3e-97 357.8 287 67.9
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 9.5e-97 357.5 231 77.9
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 9.5e-97 357.5 283 70.0
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.2e-96 357.1 212 83.0
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 1.2e-96 357.1 209 84.7
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 1.6e-96 356.7 259 70.3
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 2.1e-96 356.3 207 84.5
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 2.8e-96 355.9 274 71.2
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 3.6e-96 355.5 251 72.9
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.0e-95 354.0 203 85.2
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.0e-95 354.0 285 68.8
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 1.0e-95 354.0 213 82.2
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 1.8e-95 353.2 280 66.8
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 1.8e-95 353.2 212 82.5
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 4.0e-95 352.1 281 70.1
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 6.8e-95 351.3 280 66.8
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.5e-94 350.1 274 69.7
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 2.6e-94 349.4 281 69.0
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 3.4e-94 349.0 203 85.7
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 4.4e-94 348.6 200 83.5
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 5.8e-94 348.2 198 85.9
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 7.5e-94 347.8 276 69.2
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 7.5e-94 347.8 258 72.5
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 9.8e-94 347.4 200 83.0
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 9.8e-94 347.4 276 69.2
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 6.4e-93 344.7 209 84.7
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 8.3e-93 344.4 215 79.5
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 1.1e-92 344.0 199 83.9
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 1.4e-92 343.6 198 85.4
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.2e-92 342.4 300 64.0
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 4.1e-92 342.0 200 82.0
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 6.0e-91 338.2 191 84.3
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 1.0e-90 337.4 270 65.6
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 2.3e-90 336.3 297 65.0
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 3.0e-90 335.9 198 82.3
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 8.6e-90 334.3 198 82.8
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.8e-87 326.6 320 59.7
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 2.0e-86 323.2 275 67.3
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 4.4e-86 322.0 237 71.3
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 7.5e-86 321.2 196 80.6
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 1.4e-84 317.0 259 65.3
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 7.1e-84 314.7 166 92.2
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 8.6e-82 307.8 249 69.1
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 8.6e-82 307.8 275 65.5
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 9.5e-81 304.3 235 68.9
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 4.7e-80 302.0 198 76.3
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 4.0e-79 298.9 284 64.8
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 8.9e-79 297.7 317 55.2
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 3.4e-78 295.8 196 75.5
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 3.4e-78 295.8 232 68.5
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 5.8e-78 295.0 166 87.3
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 7.6e-78 294.7 211 69.2
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 9.9e-78 294.3 160 88.1
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 1.6e-75 287.0 166 82.5
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.3e-74 283.1 237 65.0
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 5.1e-74 282.0 272 62.1
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.0e-71 272.3 151 87.4
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.2e-70 270.8 288 55.6
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 1.5e-70 270.4 229 65.1
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 4.4e-70 268.9 148 87.2
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.8e-70 268.5 281 57.7
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 1.4e-68 263.8 277 56.0
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.6e-67 260.4 159 82.4
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.5e-65 253.8 229 61.1
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 9.6e-65 251.1 215 66.0
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 3.1e-63 246.1 149 81.9
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 5.8e-62 241.9 169 74.0
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 6.4e-61 238.4 208 63.9
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 1.4e-60 237.3 167 74.9
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 6.2e-56 221.9 149 70.5
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 1.8e-55 220.3 221 49.3
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 3.9e-50 202.6 190 62.1
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 5.1e-50 202.2 118 83.1
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 3.7e-48 196.1 178 59.6
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 1.9e-44 183.7 316 40.8
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 2.4e-39 166.8 145 60.7
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 5.5e-36 155.6 188 42.6
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 5.1e-34 149.1 200 40.5
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 1.6e-32 144.1 222 39.2
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.8e-31 140.6 84 81.0
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 2.0e-22 110.5 62 82.3
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 1.0e-21 108.2 62 80.6
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 4.2e-20 102.8 138 51.4
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 2.3e-18 97.1 59 79.7
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 4.7e-11 72.8 118 40.7
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 6.1e-11 72.4 83 49.4
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.0e-10 71.6 36 91.7
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.4e-10 71.2 40 82.5
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 4.4e-09 66.2 32 93.8
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.7e-09 65.9 153 37.9
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 4.8e-08 62.8 51 62.7
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 6.3e-08 62.4 42 71.4
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 8.2e-08 62.0 37 75.7
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 4.1e-07 59.7 34 82.4
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 7.0e-07 58.9 31 83.9


User provided reference genes

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