Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1529.2 760 100.0
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1503.0 760 97.4
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1488.8 760 95.9
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1439.9 760 92.4
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1386.7 760 89.2
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1386.3 742 90.6
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1291.9 759 81.7
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 0.0e+00 1283.5 695 89.9
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1263.4 759 79.4
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1254.2 760 78.2
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1252.7 739 80.2
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1248.8 769 77.4
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1245.0 741 79.6
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1243.8 740 79.3
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1243.0 740 79.1
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1241.5 740 79.3
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1241.1 741 79.5
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1238.8 774 76.6
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1237.6 741 79.1
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1234.6 739 79.8
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1234.6 740 78.6
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1234.2 740 79.2
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1233.4 739 78.9
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1233.0 741 79.1
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1231.9 741 78.8
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1229.9 739 79.0
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1229.5 740 79.7
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1229.5 741 78.9
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1224.2 742 79.2
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1223.0 740 77.2
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1223.0 739 77.7
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1222.6 741 77.9
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1221.1 741 78.3
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1220.7 740 77.6
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1220.3 752 77.5
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1219.9 742 78.4
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1216.1 741 77.9
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1214.9 740 76.5
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1214.1 740 78.2
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1207.2 740 76.4
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1204.1 755 75.9
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1203.0 740 76.6
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1203.0 738 77.5
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1202.6 741 76.5
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1195.6 739 76.6
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1194.9 741 76.0
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1194.5 740 75.3
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1193.3 741 76.9
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1193.3 739 76.3
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1192.9 750 76.5
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1191.8 740 75.5
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1191.0 740 75.8
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1191.0 742 75.6
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1190.6 768 74.5
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1190.3 739 76.2
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1189.5 742 76.5
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1188.7 740 75.7
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1188.3 741 75.4
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1187.6 739 75.8
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1181.4 753 75.4
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1178.7 742 75.6
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1177.5 740 74.7
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1177.2 739 74.0
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1175.6 790 72.5
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1169.1 750 73.9
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1166.8 761 75.4
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1161.4 742 73.9
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1156.7 756 72.9
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1156.0 742 73.6
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1154.8 742 73.3
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1154.8 742 73.6
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1153.3 743 73.6
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1151.7 742 73.0
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1151.3 743 73.6
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1146.3 742 72.6
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1141.3 742 72.6
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1140.6 742 71.8
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1134.4 742 72.4
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1132.9 795 68.6
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1117.4 739 71.7
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 0.0e+00 1110.1 687 77.9
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 0.0e+00 1093.6 685 75.5
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 0.0e+00 1092.4 699 74.5
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1081.6 744 70.7
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 0.0e+00 1080.9 728 71.2
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 0.0e+00 1077.0 741 71.1
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 5.2e-312 1074.3 738 71.4
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 5.1e-310 1067.4 785 66.5
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 3.9e-302 1041.2 664 75.2
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 8.8e-302 1040.0 686 71.9
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 5.5e-296 1020.8 830 62.4
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 6.1e-295 1017.3 625 78.4
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 2.9e-281 971.8 740 61.6
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 1.2e-279 966.5 743 61.2
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 1.1e-275 953.4 742 60.5
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 5.2e-262 907.9 605 72.2
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 7.1e-251 870.9 635 65.0
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 7.3e-240 834.3 688 61.6
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 3.2e-235 818.9 623 62.4
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-220 768.8 679 53.8
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 3.7e-207 725.7 523 66.5
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 7.7e-165 585.1 785 42.0
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 4.6e-149 532.7 354 68.4
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 7.8e-149 531.9 597 49.9
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 6.0e-125 452.6 278 73.7
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 8.7e-92 342.4 263 63.1
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.5e-83 315.1 289 58.8
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 4.1e-73 280.4 226 62.4
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 9.4e-70 269.2 254 56.7
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 1.2e-59 235.7 148 73.6
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 6.5e-47 193.4 122 73.0
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 5.2e-44 183.7 138 60.9
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 1.6e-37 162.2 81 85.2
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 4.7e-37 160.6 126 59.5
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 8.9e-28 129.8 109 57.8
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 1.2e-27 129.4 92 65.2
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 3.5e-24 117.9 157 43.3
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 1.2e-19 102.8 110 51.8
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 2.9e-18 98.2 62 74.2
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 2.3e-15 88.6 56 76.8
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 8.1e-13 80.1 38 92.1
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 9.2e-09 66.6 43 67.4
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 2.7e-08 65.1 40 77.5
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 3.9e-07 61.2 37 75.7
Medtr5g010890 Medicago truncatula HOM05D000161 ORTHO05D036718 3.3e-06 58.2 39 74.4


User provided reference genes

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