Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 0.0e+00 1178.7 597 100.0
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 0.0e+00 1132.1 597 94.6
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 6.5e-292 1006.9 598 87.0
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.3e-284 982.6 633 80.6
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.5e-275 951.8 628 79.3
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 3.0e-265 918.3 606 79.0
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 1.1e-251 873.2 601 74.9
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.5e-251 872.1 610 73.4
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 3.6e-250 868.2 601 74.5
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.8e-249 865.9 601 74.4
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 5.2e-249 864.4 610 73.0
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 2.0e-229 799.3 614 68.4
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 6.6e-228 794.3 598 71.4
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 1.5e-227 793.1 600 68.5
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 3.7e-223 778.5 613 67.9
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 2.7e-221 772.3 581 68.8
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 1.0e-220 770.4 590 69.5
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.6e-218 763.1 590 66.9
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 2.1e-218 762.7 605 66.9
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.5e-216 756.5 595 66.2
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.1e-214 750.4 596 63.9
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.4e-214 750.0 593 65.9
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.4e-214 749.2 594 66.2
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 4.1e-214 748.4 601 65.2
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 9.2e-214 747.3 601 65.1
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.3e-212 743.4 579 67.2
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 3.6e-210 735.3 605 64.3
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 8.1e-210 734.2 585 67.0
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 3.1e-209 732.3 609 63.9
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 1.5e-208 729.9 577 66.6
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 2.0e-208 729.6 599 63.1
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 2.6e-208 729.2 602 64.8
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 2.6e-208 729.2 600 65.3
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 4.4e-208 728.4 600 64.8
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 5.8e-208 728.0 602 67.3
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 9.9e-208 727.2 466 77.3
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 8.4e-207 724.2 600 63.0
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.4e-206 723.4 591 63.6
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 1.9e-206 723.0 584 65.4
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 4.2e-206 721.8 610 61.0
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 5.4e-206 721.5 586 65.4
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 4.6e-205 718.4 581 64.7
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 1.3e-204 716.8 577 67.4
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 6.6e-204 714.5 593 63.1
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 8.7e-204 714.1 578 65.6
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.1e-203 713.8 592 62.5
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 3.3e-203 712.2 547 67.5
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 5.6e-203 711.4 584 64.6
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 6.2e-202 708.0 582 64.3
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 8.1e-202 707.6 516 71.9
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 8.1e-202 707.6 579 63.6
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 1.1e-201 707.2 630 60.5
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 4.0e-201 705.3 526 70.5
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 5.3e-201 704.9 606 64.0
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 5.3e-201 704.9 594 62.5
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.2e-200 703.7 579 63.4
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 1.5e-200 703.4 582 63.6
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 2.0e-200 703.0 585 63.8
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 4.5e-200 701.8 579 63.4
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 7.6e-200 701.0 581 65.1
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 2.2e-199 699.5 594 62.8
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 2.9e-199 699.1 597 63.1
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 1.4e-198 696.8 599 62.6
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 3.2e-198 695.7 595 61.7
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 3.2e-198 695.7 601 61.6
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 1.3e-196 690.3 604 60.8
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 7.4e-195 684.5 602 62.8
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 9.6e-195 684.1 591 60.7
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 1.6e-194 683.3 594 62.5
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.6e-194 683.3 581 62.3
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 2.1e-194 682.9 596 59.9
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.1e-193 680.6 590 61.5
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 3.1e-193 679.1 586 62.1
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 9.0e-193 677.6 652 57.2
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 9.0e-193 677.6 560 65.0
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 1.5e-192 676.8 674 56.2
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 2.6e-192 676.0 587 61.7
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 3.4e-192 675.6 589 59.9
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 2.2e-191 672.9 584 61.3
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 2.9e-191 672.5 582 61.9
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 2.9e-191 672.5 579 61.5
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 3.8e-191 672.2 587 61.5
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 1.1e-190 670.6 582 61.7
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 3.2e-190 669.1 582 61.2
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 3.2e-190 669.1 340 98.8
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 9.3e-190 667.5 595 60.0
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 3.5e-189 665.6 617 58.7
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 3.5e-189 665.6 599 60.3
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 4.6e-189 665.2 617 59.2
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 2.3e-188 662.9 598 61.4
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 5.1e-188 661.8 577 61.0
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.5e-187 660.2 526 66.3
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 1.5e-187 660.2 656 54.6
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 2.5e-187 659.4 656 54.7
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 4.8e-186 655.2 628 58.3
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 1.1e-185 654.1 599 60.4
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 4.0e-185 652.1 587 60.3
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 5.3e-185 651.7 581 59.4
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 9.0e-185 651.0 565 60.5
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 1.5e-184 650.2 584 59.9
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 3.4e-184 649.0 584 60.6
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 1.7e-183 646.7 583 59.5
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 6.5e-183 644.8 552 62.0
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 3.2e-182 642.5 576 60.8
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 9.3e-182 641.0 609 58.9
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 1.3e-180 637.1 601 56.6
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.3e-180 636.3 604 58.4
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 3.9e-180 635.6 579 59.2
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 6.7e-180 634.8 582 58.6
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 2.5e-179 632.9 584 57.9
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 2.5e-179 632.9 589 59.1
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 5.7e-179 631.7 584 58.0
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 7.4e-179 631.3 584 57.7
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 1.3e-178 630.6 587 60.3
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 1.8e-177 626.7 589 57.6
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 5.3e-177 625.2 610 57.0
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 5.3e-177 625.2 628 57.0
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.2e-176 624.0 600 57.7
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 2.6e-176 622.9 583 57.5
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 1.3e-175 620.5 584 57.5
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 2.2e-175 619.8 584 57.4
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 5.5e-174 615.1 582 57.9
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 6.1e-173 611.7 645 54.0
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 7.4e-171 604.7 492 65.9
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 2.4e-169 599.7 590 54.7
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 3.2e-166 589.3 581 55.6
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.0e-164 584.3 469 64.4
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.8e-162 576.2 578 55.4
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 6.3e-162 575.1 561 56.7
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 3.4e-160 569.3 554 56.5
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 3.2e-158 562.8 562 55.9
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 2.7e-157 559.7 555 54.6
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 6.7e-156 555.1 579 52.7
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 5.7e-155 552.0 507 59.2
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 3.7e-154 549.3 631 51.0
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.8e-148 530.4 567 51.3
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 3.0e-148 529.6 575 53.2
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 2.0e-139 500.4 619 47.3
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 4.5e-136 489.2 577 49.0
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 1.0e-135 488.0 432 60.6
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 1.6e-133 480.7 578 48.4
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.8e-132 477.2 386 65.0
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.2e-130 470.3 434 57.8
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 2.4e-121 440.3 316 72.5
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 2.5e-110 403.7 642 38.8
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 3.6e-109 399.8 392 54.8
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 6.4e-98 362.5 334 57.2
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 3.6e-93 346.7 373 52.0
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 1.1e-65 255.4 163 82.8
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 3.5e-64 250.4 249 54.6
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 2.3e-63 247.7 234 60.7
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 2.6e-59 234.2 274 54.0
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 3.6e-48 197.2 138 73.9
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 7.4e-38 162.9 385 32.2
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 3.7e-37 160.6 476 25.4
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 5.0e-34 150.2 559 24.5
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 5.3e-28 130.2 178 48.9
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 7.2e-25 119.8 83 68.7
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 4.5e-19 100.5 103 46.6
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 7.7e-19 99.8 86 52.3
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 2.3e-18 98.2 90 47.8
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 4.2e-17 94.0 207 31.9
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 2.1e-16 91.7 72 63.9
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 2.8e-16 91.3 66 75.8
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 1.4e-15 89.0 83 57.8
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 4.4e-14 84.0 62 66.1
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 2.8e-13 81.3 101 46.5
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 5.4e-12 77.0 103 45.6
Oeu010133.1 Olea europaea HOM05D010114 ORTHO05D000601 6.1e-08 63.5 61 52.5
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 2.3e-07 61.6 35 82.9
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 6.8e-07 60.1 36 80.6
Hma1.2p1_0172F.1_g076230 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 8.9e-07 59.7 35 80.0


User provided reference genes

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