Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 1.1e-109 400.2 231 100.0
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 9.1e-109 397.1 231 98.7
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 3.8e-107 391.7 231 96.5
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 1.8e-104 382.9 231 85.3
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.7e-99 366.3 222 83.8
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 6.5e-83 311.2 231 75.3
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 2.7e-76 289.3 231 64.9
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 4.3e-74 282.0 228 65.8
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 2.9e-70 269.2 228 63.6
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 6.4e-70 268.1 228 62.3
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 5.4e-69 265.0 192 74.0
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 9.2e-69 264.2 228 61.4
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 3.5e-68 262.3 225 62.2
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 3.5e-68 262.3 231 60.2
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 7.8e-68 261.2 228 61.8
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 7.8e-68 261.2 228 61.8
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.3e-67 259.6 228 61.4
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 3.9e-67 258.8 225 64.9
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 4.3e-66 255.4 228 59.6
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 7.3e-66 254.6 228 59.6
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 2.1e-65 253.1 231 57.6
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 1.1e-64 250.8 228 58.8
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 4.0e-64 248.8 231 58.4
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 5.2e-64 248.4 237 57.0
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 2.3e-59 233.0 232 53.0
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 8.6e-59 231.1 231 51.9
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 8.6e-59 231.1 228 52.6
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 2.5e-58 229.6 278 50.7
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 2.8e-57 226.1 231 52.4
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 3.6e-57 225.7 228 52.2
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 3.6e-57 225.7 264 46.6
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 6.2e-57 224.9 129 84.5
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 1.4e-56 223.8 230 51.7
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 5.2e-56 221.9 232 51.3
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 1.5e-55 220.3 229 51.5
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 4.4e-55 218.8 230 51.7
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 7.5e-55 218.0 229 51.1
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 2.2e-54 216.5 231 48.9
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 2.9e-54 216.1 228 50.4
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 3.7e-54 215.7 232 49.6
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 4.9e-54 215.3 228 50.9
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 4.9e-54 215.3 228 50.4
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 6.4e-54 214.9 200 57.0
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 8.3e-54 214.5 230 52.2
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.1e-53 214.2 230 49.1
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.1e-53 214.2 231 48.9
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.1e-53 214.2 231 48.9
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 1.1e-53 214.2 232 50.0
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 1.4e-53 213.8 230 49.1
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 1.9e-53 213.4 230 48.7
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 3.2e-53 212.6 231 51.9
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 4.1e-53 212.2 228 48.2
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 4.1e-53 212.2 232 49.6
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 5.4e-53 211.8 232 49.1
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 7.1e-53 211.5 231 48.1
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 7.1e-53 211.5 234 49.6
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 9.2e-53 211.1 230 47.8
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 9.2e-53 211.1 235 49.4
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 1.2e-52 210.7 228 50.4
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 1.2e-52 210.7 231 51.5
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 2.7e-52 209.5 230 47.4
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 3.5e-52 209.1 232 50.0
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 3.5e-52 209.1 231 51.9
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 6.0e-52 208.4 232 48.3
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 6.0e-52 208.4 228 47.8
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.0e-51 207.6 234 48.3
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.0e-51 207.6 234 48.3
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 2.3e-51 206.5 229 47.6
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 2.3e-51 206.5 223 49.3
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 3.9e-51 205.7 229 47.6
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 5.1e-51 205.3 230 46.5
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 1.1e-50 204.1 232 49.1
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.1e-50 204.1 234 47.4
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 1.1e-50 204.1 222 48.2
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.9e-50 203.4 230 49.1
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 1.9e-50 203.4 230 48.3
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.9e-50 203.4 230 47.0
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 4.3e-50 202.2 229 47.2
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 4.3e-50 202.2 229 47.2
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 4.3e-50 202.2 228 49.6
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 7.3e-50 201.4 232 47.0
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 9.5e-50 201.1 231 44.6
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.2e-49 200.7 226 49.1
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 1.2e-49 200.7 224 46.4
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 1.2e-49 200.7 230 44.8
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 1.6e-49 200.3 232 47.4
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.6e-49 200.3 224 46.9
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.8e-49 199.5 224 46.9
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 2.8e-49 199.5 230 47.4
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 3.6e-49 199.1 232 47.0
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 3.6e-49 199.1 226 46.5
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 6.2e-49 198.4 205 52.7
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 8.1e-49 198.0 232 46.1
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 1.8e-48 196.8 232 46.1
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 1.8e-48 196.8 232 46.1
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 1.8e-48 196.8 232 47.0
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 1.8e-48 196.8 225 47.1
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 6.8e-48 194.9 234 46.6
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 8.9e-48 194.5 213 51.2
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 1.2e-47 194.1 230 46.5
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 2.0e-47 193.4 230 47.4
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 2.6e-47 193.0 232 45.7
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 5.8e-47 191.8 226 46.9
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 7.6e-47 191.4 229 46.3
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 1.7e-46 190.3 226 46.5
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 4.9e-46 188.7 226 45.6
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 6.4e-46 188.3 230 43.0
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 2.4e-45 186.4 293 39.6
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 3.2e-45 186.0 231 43.3
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 3.2e-45 186.0 222 47.3
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 5.4e-45 185.3 232 43.5
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 1.1e-42 177.6 205 46.3
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 1.5e-42 177.2 223 43.5
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 3.6e-41 172.6 228 43.0
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 4.7e-41 172.2 222 42.3
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 1.8e-40 170.2 228 40.8
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 1.8e-40 170.2 228 40.8
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 3.1e-40 169.5 130 64.6
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 6.9e-40 168.3 226 41.6
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 4.4e-39 165.6 231 40.3
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 7.6e-39 164.9 128 62.5
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 2.9e-38 162.9 228 41.2
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 8.4e-38 161.4 231 39.4
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 4.2e-37 159.1 116 63.8
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 1.2e-36 157.5 132 56.1
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 3.9e-35 152.5 229 37.1
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 8.7e-35 151.4 185 49.2
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 3.6e-33 146.0 228 38.6
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 1.8e-32 143.7 233 35.2
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 2.4e-32 143.3 181 43.1
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.5e-31 140.6 112 60.7
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 9.9e-31 137.9 110 59.1
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 1.1e-29 134.4 187 41.7
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 3.2e-29 132.9 205 40.5
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.6e-28 130.6 123 48.8
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 3.5e-28 129.4 224 38.4
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 1.8e-27 127.1 177 40.1
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 1.5e-26 124.0 111 53.2
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 2.5e-26 123.2 165 41.8
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.9e-22 109.8 230 31.7
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 3.8e-22 109.4 228 28.1
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 5.5e-21 105.5 228 33.3
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 7.9e-20 101.7 79 63.3
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.3e-18 96.3 54 85.2
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 5.6e-18 95.5 152 36.2
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 5.3e-16 89.0 106 45.3
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 1.5e-15 87.4 228 25.9
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 5.8e-15 85.5 56 71.4
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 2.9e-14 83.2 233 24.9
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 4.9e-14 82.4 230 30.4
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.4e-13 80.9 146 35.6
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 9.3e-13 78.2 49 73.5
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 6.0e-12 75.5 119 37.8
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 1.0e-11 74.7 51 68.6
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 7.4e-10 68.6 143 32.9
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 6.3e-09 65.5 49 63.3
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 7.7e-07 58.5 113 32.7


User provided reference genes

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