Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 0.0e+00 1661.4 913 100.0
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 0.0e+00 1583.2 913 96.3
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 0.0e+00 1540.0 916 93.3
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 0.0e+00 1352.0 915 84.6
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 0.0e+00 1323.9 917 81.0
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 0.0e+00 1156.0 832 78.7
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 0.0e+00 1132.9 917 71.8
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 7.1e-298 1027.3 922 62.1
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 7.3e-295 1017.3 924 64.1
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 5.8e-292 1007.7 932 61.6
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 8.1e-286 987.3 927 61.4
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 1.5e-284 983.0 924 62.6
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 2.4e-282 975.7 943 60.7
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 3.1e-277 958.7 626 83.2
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 6.9e-277 957.6 920 60.8
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 4.3e-271 938.3 937 59.6
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 3.7e-270 935.3 925 59.4
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 3.1e-269 932.2 919 60.8
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 1.3e-267 926.8 915 58.0
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 4.9e-267 924.9 939 57.8
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 1.6e-265 919.8 923 57.9
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 3.5e-265 918.7 922 58.9
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 1.3e-262 910.2 932 59.7
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 2.8e-262 909.1 921 57.1
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 5.3e-261 904.8 926 57.6
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 6.5e-259 897.9 926 55.6
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 1.8e-256 889.8 899 58.0
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 1.5e-255 886.7 935 56.9
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 1.7e-254 883.2 936 57.5
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 4.8e-254 881.7 932 56.1
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.1e-253 880.6 887 58.2
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 1.4e-253 880.2 925 57.0
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 2.6e-252 875.9 934 56.1
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 1.2e-249 867.1 888 57.5
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 3.0e-248 862.4 908 55.5
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 6.7e-248 861.3 932 58.4
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 8.8e-248 860.9 932 58.4
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 3.3e-247 859.0 919 55.0
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 4.1e-245 852.0 925 54.9
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 9.1e-245 850.9 932 56.1
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 1.2e-244 850.5 928 54.1
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.0e-243 847.4 916 54.4
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 8.5e-243 844.3 937 55.4
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 2.5e-242 842.8 889 56.7
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 1.2e-241 840.5 884 55.9
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 4.7e-241 838.6 924 57.4
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 1.4e-240 837.0 911 53.9
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 3.9e-240 835.5 925 56.2
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 8.8e-240 834.3 752 62.5
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 1.5e-239 833.6 916 56.8
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 7.4e-239 831.2 917 53.9
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 7.4e-239 831.2 860 56.7
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 4.8e-238 828.6 940 54.8
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 5.3e-237 825.1 890 54.8
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 2.2e-235 819.7 921 54.6
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 6.5e-235 818.1 927 55.3
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 6.5e-235 818.1 923 58.0
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 1.2e-233 813.9 932 55.2
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 1.6e-233 813.5 920 54.6
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 4.7e-233 812.0 813 58.8
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 2.3e-232 809.7 924 52.7
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 1.2e-231 807.4 897 55.4
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 1.2e-231 807.4 931 53.3
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.5e-231 807.0 945 51.4
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 4.4e-231 805.4 930 52.6
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 4.4e-231 805.4 921 53.9
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 1.4e-229 800.4 890 56.4
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 1.8e-229 800.0 918 52.7
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 9.1e-229 797.7 925 52.2
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 2.0e-228 796.6 934 53.4
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 1.7e-227 793.5 843 56.6
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.5e-226 789.6 918 52.1
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 5.5e-226 788.5 939 52.5
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.1e-225 786.6 918 51.9
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 6.1e-225 785.0 887 53.8
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 4.0e-224 782.3 902 53.8
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 1.2e-223 780.8 895 53.0
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 1.2e-223 780.8 914 54.2
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 2.0e-223 780.0 916 53.1
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 9.8e-223 777.7 883 54.8
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 8.3e-222 774.6 924 51.4
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 4.1e-221 772.3 893 54.0
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 7.0e-221 771.5 898 52.3
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 1.2e-220 770.8 912 54.4
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 1.2e-220 770.8 918 54.5
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 1.3e-219 767.3 834 56.7
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 6.5e-219 765.0 881 52.8
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 5.2e-216 755.4 898 52.1
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 6.3e-214 748.4 947 48.9
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.8e-213 746.9 897 51.6
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 1.7e-211 740.3 896 51.0
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 2.3e-211 740.0 920 48.9
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 2.1e-209 733.4 917 52.0
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 4.0e-208 729.2 917 49.0
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 1.3e-206 724.2 904 50.9
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 3.7e-206 722.6 903 49.2
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 4.1e-205 719.2 896 50.4
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 4.1e-205 719.2 912 50.0
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 5.4e-205 718.8 911 48.2
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 9.2e-205 718.0 924 49.8
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 1.1e-202 711.1 929 50.2
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 3.6e-201 706.1 892 48.4
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 9.2e-197 691.4 898 46.9
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 8.6e-195 684.9 868 49.8
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 3.3e-194 682.9 881 48.0
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 4.0e-192 676.0 924 47.8
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 5.2e-192 675.6 898 47.2
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 3.7e-190 669.5 897 46.9
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 3.4e-183 646.4 775 50.8
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 1.2e-180 637.9 581 64.0
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 6.6e-179 632.1 892 46.0
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 4.9e-174 615.9 901 45.0
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 6.6e-171 605.5 660 56.8
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 2.0e-167 594.0 898 44.1
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 1.3e-166 591.3 896 44.6
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 5.4e-165 585.9 904 43.7
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 2.6e-159 567.0 654 54.6
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.5e-154 551.2 1033 39.2
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 5.7e-130 469.5 408 63.7
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 3.2e-125 453.8 861 38.6
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.4e-123 448.4 900 37.3
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 8.2e-121 439.1 1046 35.3
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 5.3e-120 436.4 769 40.7
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 1.5e-117 428.3 433 54.3
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 4.1e-112 410.2 478 52.7
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 2.5e-109 401.0 941 36.6
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 4.1e-104 383.6 1001 35.6
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 2.5e-93 347.8 343 56.6
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 8.9e-91 339.3 248 71.4
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.0e-90 338.2 278 64.7
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 1.7e-89 335.1 342 53.5
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 1.4e-88 332.0 500 45.4
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 2.0e-87 328.2 918 31.3
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 2.0e-87 328.2 918 31.3
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 2.3e-83 314.7 973 29.8
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 3.3e-69 267.7 242 59.5
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 7.3e-69 266.5 776 32.2
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 2.6e-66 258.1 195 73.8
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 1.3e-65 255.8 200 66.0
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 1.1e-64 252.7 474 40.1
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 4.2e-64 250.8 427 41.7
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 4.6e-63 247.3 427 41.5
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 6.6e-62 243.4 445 40.7
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 4.8e-60 237.3 435 41.4
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 4.4e-58 230.7 346 43.1
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 7.6e-58 229.9 389 41.1
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 1.4e-56 225.7 901 27.9
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 2.4e-56 224.9 426 39.7
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 7.6e-50 203.4 131 78.6
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 4.9e-49 200.7 388 37.6
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 8.4e-49 199.9 313 44.1
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 1.5e-45 189.1 310 42.6
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.8e-43 182.2 177 62.1
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 9.0e-43 179.9 172 59.9
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.7e-39 168.3 323 43.3
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 1.0e-38 166.4 992 25.7
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 1.8e-38 165.6 192 52.1
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.3e-36 159.5 349 36.7
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.6e-36 159.1 161 50.9
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.1e-35 156.4 731 27.5
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 2.4e-35 155.2 166 55.4
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 4.5e-34 151.0 171 46.8
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 4.2e-32 144.4 333 36.0
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 4.2e-32 144.4 332 35.8
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 1.3e-30 139.4 212 46.7
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 9.7e-29 133.3 128 59.4
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 1.3e-28 132.9 839 25.3
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 1.7e-25 122.5 306 34.0
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 5.0e-25 120.9 328 32.9
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.4e-24 119.4 122 63.1
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 2.1e-23 115.5 82 75.6
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 8.5e-17 93.6 316 32.9
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 1.4e-16 92.8 97 55.7
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 2.7e-15 88.6 203 33.5
CAN.G1155.3 Capsicum annuum HOM05D000198 ORTHO05D004760 1.1e-13 83.2 134 45.5
CAN.G443.2 Capsicum annuum HOM05D000880 ORTHO05D004760 1.1e-08 66.6 189 33.3
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 3.6e-07 61.6 192 31.8
MBI19_g43566_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D244402 2.3e-06 58.9 110 38.2


User provided reference genes

Program Settings