Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 8.3e-70 266.9 136 100.0
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 8.3e-70 266.9 136 100.0
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 1.9e-69 265.8 136 95.6
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 9.5e-66 253.4 136 95.6
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 1.4e-64 249.6 136 92.6
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 2.6e-63 245.4 136 91.9
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 1.7e-62 242.7 137 86.9
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 5.8e-55 217.6 136 77.2
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 1.3e-54 216.5 136 78.7
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 1.3e-54 216.5 137 79.6
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 3.8e-54 214.9 136 76.5
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 4.9e-54 214.5 139 79.1
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 4.9e-54 214.5 139 79.1
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 6.4e-54 214.2 138 77.5
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 6.4e-54 214.2 138 77.5
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 6.4e-54 214.2 136 76.5
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 6.4e-54 214.2 136 77.9
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 8.4e-54 213.8 137 78.1
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 1.9e-53 212.6 136 75.7
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 5.4e-53 211.1 136 76.5
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 7.1e-53 210.7 136 75.7
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 9.3e-53 210.3 136 75.0
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 9.3e-53 210.3 138 74.6
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 9.3e-53 210.3 136 75.0
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 1.2e-52 209.9 136 75.0
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 2.1e-52 209.1 136 75.7
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 2.1e-52 209.1 136 73.5
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 2.7e-52 208.8 134 76.1
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 6.0e-52 207.6 136 75.0
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 6.0e-52 207.6 134 76.9
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 1.0e-51 206.8 137 73.7
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 1.0e-51 206.8 135 74.8
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 1.0e-51 206.8 136 75.0
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 1.7e-51 206.1 134 73.9
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 1.7e-51 206.1 136 75.7
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 1.7e-51 206.1 136 74.3
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 2.3e-51 205.7 136 72.8
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 2.3e-51 205.7 136 73.5
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 3.0e-51 205.3 136 72.8
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 3.9e-51 204.9 136 78.7
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 6.6e-51 204.1 137 76.6
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 6.6e-51 204.1 137 74.5
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 6.6e-51 204.1 136 73.5
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 8.7e-51 203.8 136 74.3
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 8.7e-51 203.8 137 73.7
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 1.1e-50 203.4 134 72.4
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 1.5e-50 203.0 133 75.2
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 1.9e-50 202.6 138 77.5
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 2.5e-50 202.2 137 73.7
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 2.5e-50 202.2 136 71.3
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 2.5e-50 202.2 136 71.3
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 2.5e-50 202.2 136 76.5
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 2.5e-50 202.2 136 73.5
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 3.3e-50 201.8 137 73.7
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 3.3e-50 201.8 138 71.7
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 5.6e-50 201.1 138 71.7
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 5.6e-50 201.1 138 71.7
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 5.6e-50 201.1 138 71.7
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 7.3e-50 200.7 136 69.1
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 7.3e-50 200.7 136 72.8
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 9.6e-50 200.3 137 73.7
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 9.6e-50 200.3 137 71.5
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 1.3e-49 199.9 136 72.1
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 1.6e-49 199.5 138 73.9
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 1.6e-49 199.5 139 71.2
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 2.1e-49 199.1 139 71.2
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 2.8e-49 198.7 136 73.5
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 8.1e-49 197.2 138 70.3
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 8.1e-49 197.2 138 76.1
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 1.4e-48 196.4 138 68.8
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 3.1e-48 195.3 138 71.0
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 4.0e-48 194.9 139 69.1
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 5.3e-48 194.5 130 73.8
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 5.3e-48 194.5 134 70.9
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 1.2e-47 193.4 138 67.4
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 3.4e-47 191.8 134 71.6
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 4.5e-47 191.4 132 71.2
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 4.5e-47 191.4 134 72.4
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 5.8e-47 191.0 137 69.3
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 7.6e-47 190.7 132 70.5
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 7.6e-47 190.7 132 68.2
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 9.9e-47 190.3 147 68.0
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 9.9e-47 190.3 143 68.5
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 9.9e-47 190.3 119 76.5
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 9.9e-47 190.3 131 77.1
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 1.7e-46 189.5 137 70.8
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 1.7e-46 189.5 137 69.3
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 1.7e-46 189.5 139 69.1
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 3.8e-46 188.3 133 72.9
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 6.4e-46 187.6 138 70.3
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 5.4e-45 184.5 130 70.0
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 7.1e-45 184.1 137 68.6
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 2.7e-44 182.2 146 63.7
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 2.7e-44 182.2 146 63.7
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 2.7e-44 182.2 146 63.7
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 2.7e-44 182.2 146 63.7
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 2.3e-43 179.1 114 73.7
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 2.3e-43 179.1 135 66.7
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 2.3e-43 179.1 135 66.7
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 8.7e-43 177.2 115 72.2
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 2.5e-42 175.6 143 61.5
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 3.3e-42 175.3 114 72.8
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 4.3e-42 174.9 115 72.2
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 5.6e-42 174.5 114 72.8
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 7.4e-42 174.1 115 71.3
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 9.6e-42 173.7 115 71.3
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 4.8e-41 171.4 114 71.1
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 1.1e-40 170.2 108 73.1
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 1.1e-40 170.2 108 73.1
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 1.1e-40 170.2 108 73.1
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 1.4e-40 169.9 108 73.1
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 1.4e-40 169.9 108 73.1
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 9.0e-40 167.2 108 71.3
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 1.2e-39 166.8 108 71.3
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 3.4e-39 165.2 113 74.3
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 4.5e-39 164.9 120 65.0
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 3.8e-38 161.8 118 64.4
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 4.9e-38 161.4 119 69.7
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 9.3e-37 157.1 133 59.4
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 1.0e-35 153.7 128 60.2
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 5.1e-35 151.4 98 70.4
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 1.5e-34 149.8 132 55.3
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 4.3e-34 148.3 93 72.0
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 4.3e-34 148.3 137 59.1
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 2.2e-30 136.0 84 72.6
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 2.3e-27 125.9 118 59.3
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 2.3e-27 125.9 122 56.6
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 4.3e-26 121.7 110 55.5
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 7.6e-23 110.9 69 79.7
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 1.3e-22 110.2 72 68.1
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 1.7e-22 109.8 81 75.3
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 5.0e-22 108.2 136 48.5
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 1.2e-20 103.6 59 78.0
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 1.2e-20 103.6 99 50.5
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 2.7e-20 102.4 119 44.5
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 7.9e-20 100.9 75 64.0
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 5.7e-18 94.7 74 67.6
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 2.2e-17 92.8 59 67.8
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 4.8e-17 91.7 114 40.4
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 1.8e-16 89.7 53 77.4
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 9.1e-16 87.4 84 54.8
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 5.0e-14 81.6 105 42.9
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 1.9e-13 79.7 56 69.6
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 1.6e-12 76.6 80 50.0
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 6.7e-11 71.2 59 55.9
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 5.7e-10 68.2 140 40.7
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 1.4e-08 63.5 77 45.5
MELO3C033488.2 Cucumis melo HOM05D005190 ORTHO05D006183 2.4e-08 62.8 76 48.7


User provided reference genes

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