Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 3.4e-247 857.8 414 100.0
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 1.6e-241 839.0 414 98.1
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 9.9e-223 776.5 414 90.8
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 1.4e-221 772.7 415 90.4
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 6.6e-211 737.3 414 85.5
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 9.0e-192 673.7 387 82.9
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 1.3e-169 600.1 421 67.2
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 2.1e-164 582.8 421 66.5
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.0e-163 580.5 428 66.6
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 5.9e-159 564.7 427 63.9
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 1.0e-158 563.9 418 64.8
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 5.0e-158 561.6 423 63.1
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 1.2e-156 557.0 421 63.7
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 1.6e-156 556.6 417 65.2
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 2.7e-156 555.8 416 63.5
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 4.7e-156 555.1 448 61.2
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 1.8e-155 553.1 421 63.9
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 2.0e-154 549.7 421 62.9
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 7.5e-154 547.7 417 61.4
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 1.4e-152 543.5 421 61.3
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 2.2e-150 536.2 422 61.1
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 2.9e-150 535.8 421 62.0
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 3.8e-150 535.4 422 61.1
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 7.2e-149 531.2 422 63.0
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 1.2e-148 530.4 418 61.0
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 3.6e-148 528.9 415 60.7
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 3.6e-148 528.9 417 62.8
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 1.4e-147 526.9 422 62.3
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 1.8e-147 526.6 417 62.1
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.2e-146 523.9 417 61.4
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 2.0e-146 523.1 413 61.0
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 1.7e-145 520.0 417 61.2
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.7e-145 520.0 417 61.2
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.2e-145 519.6 417 60.9
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.8e-145 519.2 417 60.9
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 1.4e-144 516.9 421 58.4
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 5.4e-144 515.0 425 57.9
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 7.0e-144 514.6 425 57.4
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 7.0e-144 514.6 425 57.4
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 4.5e-143 511.9 416 60.3
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 4.5e-143 511.9 422 58.3
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 5.9e-143 511.5 426 61.0
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 1.3e-142 510.4 430 58.6
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 1.7e-142 510.0 417 60.9
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 1.7e-142 510.0 430 59.3
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 5.0e-142 508.4 417 58.3
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 6.5e-142 508.1 420 59.0
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 1.9e-141 506.5 420 59.0
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 2.5e-141 506.1 424 56.6
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 3.2e-141 505.8 418 58.9
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 3.2e-141 505.8 421 57.5
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 4.2e-141 505.4 284 85.2
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 5.5e-141 505.0 422 58.1
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 7.2e-141 504.6 423 58.6
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 1.2e-140 503.8 420 58.6
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 2.7e-140 502.7 418 58.9
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 3.6e-140 502.3 424 58.7
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 4.7e-140 501.9 421 57.7
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 4.7e-140 501.9 417 56.6
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 4.7e-140 501.9 416 58.2
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 2.3e-139 499.6 420 58.8
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 2.3e-139 499.6 425 59.5
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 4.0e-139 498.8 390 62.6
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 3.4e-138 495.7 420 58.3
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 1.7e-137 493.4 420 57.4
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 2.2e-137 493.0 415 57.8
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 2.2e-137 493.0 422 57.8
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 2.8e-137 492.7 420 57.9
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 3.1e-136 489.2 416 56.0
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 4.1e-136 488.8 392 61.5
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 5.4e-136 488.4 433 56.1
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 7.0e-136 488.0 419 55.1
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 1.2e-135 487.3 418 56.0
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.2e-135 487.3 415 56.1
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 2.0e-135 486.5 429 56.4
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 3.5e-135 485.7 415 56.4
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 5.9e-135 485.0 418 54.5
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 1.3e-134 483.8 427 55.0
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 1.7e-134 483.4 364 61.5
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 3.8e-134 482.3 474 52.1
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 6.6e-134 481.5 415 56.1
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 1.5e-133 480.3 495 50.5
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 2.1e-132 476.5 427 54.6
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 3.0e-131 472.6 427 54.3
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 6.8e-131 471.5 403 58.1
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 3.4e-130 469.2 411 55.5
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 1.3e-129 467.2 464 52.2
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 2.9e-129 466.1 523 48.0
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 6.4e-129 464.9 392 57.9
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 1.8e-128 463.4 424 53.3
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 7.0e-128 461.5 415 52.3
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 1.6e-127 460.3 452 50.2
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 1.0e-126 457.6 418 55.0
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 3.0e-126 456.1 524 47.1
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 5.0e-126 455.3 419 53.7
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 7.3e-125 451.4 412 51.9
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 6.2e-124 448.4 413 52.3
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 2.6e-122 443.0 417 51.3
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 4.4e-122 442.2 425 51.1
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 2.2e-121 439.9 419 51.8
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 2.9e-121 439.5 451 49.0
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 1.9e-120 436.8 425 50.8
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 1.8e-115 420.2 422 49.3
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 3.1e-115 419.5 450 46.9
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.2e-113 413.3 340 59.1
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.2e-113 413.3 340 59.1
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 4.9e-113 412.1 419 49.2
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 4.9e-113 412.1 419 49.2
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 6.4e-113 411.8 419 49.4
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 1.9e-112 410.2 417 48.4
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 4.1e-112 409.1 417 48.4
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 1.5e-106 390.6 433 46.7
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 6.4e-105 385.2 438 45.9
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 3.2e-104 382.9 412 50.0
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 7.8e-103 378.3 417 47.5
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 4.7e-100 369.0 410 46.3
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 1.4e-91 340.9 236 65.7
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 9.0e-91 338.2 191 84.3
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 2.0e-90 337.0 424 46.2
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 4.0e-83 312.8 170 81.8
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 1.2e-79 301.2 418 40.7
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 2.0e-74 283.9 157 79.0
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.9e-73 280.0 141 85.8
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 1.4e-72 277.7 541 33.5
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 7.1e-72 275.4 425 37.4
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.5e-66 257.7 144 80.6
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 3.0e-54 216.9 119 77.3
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.0e-46 191.8 91 87.9
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 2.4e-35 154.1 227 39.2
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 3.6e-31 140.2 81 76.5
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 7.5e-29 132.5 71 93.0
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.8e-28 130.6 73 83.6
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.8e-28 130.6 73 83.6
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 2.7e-26 124.0 74 86.5
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.7e-25 121.3 64 82.8
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 1.2e-23 115.2 472 26.7
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 1.8e-22 111.3 59 79.7
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 9.8e-21 105.5 66 71.2
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 1.3e-20 105.1 89 50.6


User provided reference genes

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