Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g030390 Solanum pennellii HOM05D005266 ORTHO05D006416 6.4e-193 677.2 326 100.0
Solyc08g082100.3 Solanum lycopersicum HOM05D005266 ORTHO05D006416 4.3e-189 664.5 326 98.2
PGSC0003DMG400012295 Solanum tuberosum HOM05D005266 ORTHO05D006416 2.4e-184 648.7 364 87.6
Nitab4.5_0007099g0010 Nicotiana tabacum HOM05D005266 ORTHO05D006416 6.4e-177 624.0 326 90.8
Nitab4.5_0000223g0310 Nicotiana tabacum HOM05D005266 ORTHO05D006416 1.6e-175 619.4 326 90.5
Cc08_g15880 Coffea canephora HOM05D005266 ORTHO05D006416 9.7e-149 530.4 326 74.8
Peaxi162Scf00074g01141 Petunia axillaris HOM05D005266 ORTHO05D006416 1.8e-147 526.2 326 79.1
GSVIVG01019509001 Vitis vinifera HOM05D005266 ORTHO05D006416 2.4e-147 525.8 326 73.9
Rhsim07G0083300 Rhododendron simsii HOM05D005266 ORTHO05D006416 1.7e-145 519.6 324 74.4
Cfa012815 Carpinus fangiana HOM05D005266 ORTHO05D006416 8.5e-145 517.3 327 73.4
Hma1.2p1_0952F.1_g241000 Hydrangea macrophylla HOM05D005266 ORTHO05D006416 2.5e-144 515.8 324 72.5
CSS0021201 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 5.5e-144 514.6 326 73.3
Ciclev10021146m.g Citrus clementina HOM05D005266 ORTHO05D006416 5.5e-144 514.6 326 74.2
SalBow1G7588 Salvia bowleyana HOM05D005266 ORTHO05D006416 7.2e-144 514.2 326 73.6
SalBow1G3663 Salvia bowleyana HOM05D005266 ORTHO05D006416 1.2e-143 513.5 326 73.6
Prupe.5G116300 Prunus persica HOM05D005266 ORTHO05D006416 2.1e-143 512.7 327 71.6
vmacro13906 Vaccinium macrocarpon HOM05D005266 ORTHO05D006416 2.7e-143 512.3 326 72.4
CSS0021291 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 3.6e-143 511.9 327 73.1
Lj8C194T1 Lonicera japonica HOM05D005266 ORTHO05D006416 1.4e-142 510.0 324 72.5
CANSAT21G1278 Cannabis sativa HOM05D005266 ORTHO05D006416 2.3e-142 509.2 326 72.1
Duzib205G1998 Durio zibethinus HOM05D005266 ORTHO05D006416 3.0e-142 508.8 325 73.2
Migut.A00673 Erythranthe guttata HOM05D005266 ORTHO05D006416 3.0e-142 508.8 327 72.2
Manes.02G011800 Manihot esculenta HOM05D005266 ORTHO05D006416 3.3e-141 505.4 326 72.4
COL.COLO4_10665 Corchorus olitorius HOM05D005266 ORTHO05D006416 1.3e-140 503.4 325 72.3
Atru.chr9.2024 Acer truncatum HOM05D005266 ORTHO05D006416 3.7e-140 501.9 326 72.1
MSTRG.11934 Avicennia marina HOM05D005266 ORTHO05D006416 4.8e-140 501.5 326 70.6
Thecc.03G294500 Theobroma cacao HOM05D005266 ORTHO05D006416 4.8e-140 501.5 326 72.1
Actinidia27330 Actinidia chinensis HOM05D005266 ORTHO05D006416 5.3e-139 498.0 327 70.6
RcHm_v2.0_Chr7g0195271 Rosa chinensis HOM05D005266 ORTHO05D006416 5.3e-139 498.0 327 71.3
Atru.chr9.2034 Acer truncatum HOM05D005266 ORTHO05D006416 3.5e-138 495.4 326 71.8
Glyma.11G018300 Glycine max HOM05D005266 ORTHO05D006416 4.5e-138 495.0 327 71.3
MD14G1122800 Malus domestica HOM05D005266 ORTHO05D006416 4.5e-138 495.0 327 69.7
Lj8A209T47 Lonicera japonica HOM05D005266 ORTHO05D006416 7.7e-138 494.2 349 66.8
TWI60G1723 Tripterygium wilfordii HOM05D005266 ORTHO05D006416 2.2e-137 492.7 326 70.6
MD06G1103700 Malus domestica HOM05D005266 ORTHO05D006416 5.0e-137 491.5 327 69.4
Glyma.01G224700 Glycine max HOM05D005266 ORTHO05D006416 6.5e-137 491.1 327 70.6
PGR031G3352 Punica granatum HOM05D005266 ORTHO05D006416 1.1e-136 490.3 324 71.3
CiPaw.12G084500 Carya illinoinensis HOM05D005266 ORTHO05D006416 2.5e-136 489.2 327 71.3
FvH4_5g04211 Fragaria vesca HOM05D005266 ORTHO05D006416 2.5e-136 489.2 327 69.1
Sabra03G0099600 Salix brachista HOM05D005266 ORTHO05D006416 4.2e-136 488.4 326 69.3
FAN04G0732 Fragaria x ananassa HOM05D005266 ORTHO05D006416 3.6e-135 485.3 326 69.0
Potri.003G138300 Populus trichocarpa HOM05D005266 ORTHO05D006416 1.8e-134 483.0 326 69.3
LjContig00312_ERROPOS870357g0017789 Lotus japonicus HOM05D005266 ORTHO05D006416 4.0e-134 481.9 327 70.0
Phvul.002G163300 Phaseolus vulgaris HOM05D005266 ORTHO05D006416 4.0e-134 481.9 327 69.7
Gohir.A12G235200 Gossypium hirsutum HOM05D005266 ORTHO05D006416 5.2e-134 481.5 325 70.5
Gohir.D12G236400 Gossypium hirsutum HOM05D005266 ORTHO05D006416 6.7e-134 481.1 325 69.8
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 1.2e-133 480.3 327 70.0
Gorai.008G253100 Gossypium raimondii HOM05D005266 ORTHO05D006416 2.0e-133 479.6 325 69.5
Carub.0002s0044 Capsella rubella HOM05D005266 ORTHO05D006416 3.3e-133 478.8 325 68.3
Aqoxy5G04165 Aquilegia oxysepala HOM05D005266 ORTHO05D006416 7.5e-133 477.6 325 67.7
AL2G10520 Arabidopsis lyrata HOM05D005266 ORTHO05D006416 1.3e-132 476.9 323 67.8
Eucgr.D01715 Eucalyptus grandis HOM05D005266 ORTHO05D006416 1.7e-132 476.5 324 69.1
AT1G64350 Arabidopsis thaliana HOM05D005266 ORTHO05D006416 2.8e-132 475.7 323 67.5
SGA_v2.0_scaffold305G47940 Striga asiatica HOM05D005266 ORTHO05D006416 8.2e-132 474.2 369 62.9
THA.LOC104823610 Tarenaya hassleriana HOM05D005266 ORTHO05D006416 8.2e-132 474.2 328 67.1
AUR62010819 Chenopodium quinoa HOM05D005266 ORTHO05D006416 3.1e-131 472.2 327 69.1
CARHR046620 Cardamine hirsuta HOM05D005266 ORTHO05D006416 1.2e-130 470.3 328 66.5
Sed0003958 Sechium edule HOM05D005266 ORTHO05D006416 1.6e-130 469.9 328 66.5
A09p14760 Brassica napus HOM05D005266 ORTHO05D006416 4.5e-130 468.4 323 68.1
BcaB07g31457 Brassica carinata HOM05D005266 ORTHO05D006416 7.7e-130 467.6 322 67.7
C09p17870 Brassica napus HOM05D005266 ORTHO05D006416 7.7e-130 467.6 324 67.6
BolC9t54684H Brassica oleracea HOM05D005266 ORTHO05D006416 7.7e-130 467.6 324 67.6
BcaC04g22562 Brassica carinata HOM05D005266 ORTHO05D006416 2.2e-129 466.1 324 67.3
ClCG07G014940 Citrullus lanatus HOM05D005266 ORTHO05D006416 2.2e-129 466.1 328 66.2
BraA09t37122Z Brassica rapa HOM05D005266 ORTHO05D006416 3.8e-129 465.3 322 68.3
Cpa.g.sc79.62 Carica papaya HOM05D005266 ORTHO05D006416 5.0e-129 464.9 325 66.5
PSO384G5109 Papaver somniferum HOM05D005266 ORTHO05D006416 6.5e-129 464.5 325 67.1
Ah.12g052360 Amaranthus hybridus HOM05D005266 ORTHO05D006416 8.5e-129 464.2 326 67.5
Lsat_1_v5_gn_6_84320 Lactuca sativa HOM05D005266 ORTHO05D006416 1.5e-128 463.4 324 64.2
Psat1g124400 Pisum sativum HOM05D005266 ORTHO05D006416 1.5e-128 463.4 327 67.6
TPR.G31703 Trifolium pratense HOM05D005266 ORTHO05D006416 1.5e-128 463.4 329 67.8
arahy.Tifrunner.gnm1.ann1.B1IHLW Arachis hypogaea HOM05D005266 ORTHO05D006416 1.9e-128 463.0 327 66.7
HanXRQChr11g0348461 Helianthus annuus HOM05D005266 ORTHO05D006416 3.2e-128 462.2 326 65.0
PSO135G0479 Papaver somniferum HOM05D005266 ORTHO05D006416 3.2e-128 462.2 325 66.2
Thhalv10023589m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 4.2e-128 461.8 325 66.5
Haze_08644 Corylus avellana HOM05D005266 ORTHO05D006416 5.5e-128 461.5 337 66.2
Medtr6g072020 Medicago truncatula HOM05D005266 ORTHO05D006416 9.4e-128 460.7 329 66.6
arahy.Tifrunner.gnm1.ann1.J0IMEJ Arachis hypogaea HOM05D005266 ORTHO05D006416 1.2e-127 460.3 327 66.4
MELO3C016280.2 Cucumis melo HOM05D005266 ORTHO05D006416 2.1e-127 459.5 328 64.9
CsaV3_4G006470 Cucumis sativus L. HOM05D005266 ORTHO05D006416 2.7e-127 459.1 328 65.2
Hund14232 Selenicereus undatus HOM05D005266 ORTHO05D006416 3.6e-127 458.8 327 67.3
Sp2g00410 Schrenkiella parvula HOM05D005266 ORTHO05D006416 4.7e-127 458.4 326 65.0
ECA240G2034 Erigeron canadensis HOM05D005266 ORTHO05D006416 1.8e-126 456.4 328 64.9
Dinv38851 Davidia involucrata HOM05D005266 ORTHO05D006416 2.3e-126 456.1 280 75.4
HanXRQChr03g0085181 Helianthus annuus HOM05D005266 ORTHO05D006416 4.0e-126 455.3 326 63.2
TAR307G0004 Trochodendron aralioides HOM05D005266 ORTHO05D006416 4.0e-126 455.3 326 66.0
Lalb_Chr05g0211611 Lupinus albus HOM05D005266 ORTHO05D006416 1.5e-125 453.4 327 66.7
MBI06_g35286_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 2.8e-124 449.1 322 64.6
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 7.0e-123 444.5 324 64.8
Ca_20295_v3 Cicer arietinum L. HOM05D005266 ORTHO05D006416 5.9e-122 441.4 327 64.8
Zm00001eb159590 Zea mays HOM05D005266 ORTHO05D006416 2.0e-117 426.4 320 58.8
Os01g0620100 Oryza sativa ssp. japonica HOM05D005266 ORTHO05D006416 9.8e-117 424.1 320 59.1
Nn1g01825 Nelumbo nucifera HOM05D005266 ORTHO05D006416 4.5e-114 415.2 283 67.8
AUR62019818 Chenopodium quinoa HOM05D005266 ORTHO05D006416 2.9e-113 412.5 277 71.1
DCAR_027714 Daucus carota HOM05D005266 ORTHO05D006416 3.3e-112 409.1 275 70.5
FAN13G2918 Fragaria x ananassa HOM05D005266 ORTHO05D006416 2.8e-111 406.0 284 66.9
FAN18G4151 Fragaria x ananassa HOM05D005266 ORTHO05D006416 2.8e-111 406.0 284 66.9
FAN08G1599 Fragaria x ananassa HOM05D005266 ORTHO05D006416 3.6e-111 405.6 284 66.9
Sc01g0010180 Simmondsia chinensis HOM05D005266 ORTHO05D006416 2.6e-109 399.4 283 64.3
Nn3g19065 Nelumbo nucifera HOM05D005266 ORTHO05D006416 1.3e-108 397.1 326 58.0
SEGI_13107 Sequoiadendron giganteum HOM05D005266 ORTHO05D006416 3.0e-105 386.0 326 53.4
EL10Ac5g12895 Beta vulgaris HOM05D005266 ORTHO05D006416 1.6e-103 380.2 277 66.8
CDE02G0379 Ceratophyllum demersum HOM05D005266 ORTHO05D006416 4.7e-95 352.1 223 71.3
HPP92_004677 Vanilla planifolia HOM05D005266 ORTHO05D006416 6.2e-95 351.7 321 53.3
Oeu061096.1 Olea europaea HOM05D005266 ORTHO05D000397 2.9e-92 342.8 200 78.0
TAR375G1085 Trochodendron aralioides HOM05D005266 ORTHO05D006416 1.7e-89 333.6 202 76.2
MD14G1133100 Malus domestica HOM05D005266 ORTHO05D006416 5.6e-88 328.6 306 54.9
unitig_899.g15005 Utricularia gibba HOM05D005266 ORTHO05D006416 8.1e-87 324.7 329 48.3
Mapoly0117s0010 Marchantia polymorpha HOM05D005266 ORTHO05D006416 3.5e-82 309.3 320 44.7
ATR0589G095 Amborella trichopoda HOM05D005266 ORTHO05D006416 1.5e-80 303.9 201 66.7
AagrBONN_evm.TU.Sc2ySwM_344.5454 Anthoceros agrestis HOM05D005266 ORTHO05D006416 4.0e-78 295.8 315 44.4
Pp3c5_28960 Physcomitrium patens HOM05D005266 ORTHO05D006416 9.3e-75 284.6 318 42.1
SMO147G0195 Selaginella moellendorffii HOM05D005266 ORTHO05D006416 4.6e-74 282.3 320 44.1
MD15G1317600 Malus domestica HOM05D005266 ORTHO05D006416 2.2e-52 210.3 170 60.0
Thhalv10023957m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 3.2e-51 206.5 158 62.7
MD06G1116200 Malus domestica HOM05D005266 ORTHO05D006416 9.3e-51 204.9 202 52.5
HanXRQChr03g0066311 Helianthus annuus HOM05D005266 ORTHO05D006416 8.8e-41 171.8 158 54.4
MD17G1262800 Malus domestica HOM05D005266 ORTHO05D006416 3.2e-35 153.3 110 62.7
ATR0589G038 Amborella trichopoda HOM05D005266 ORTHO05D006416 1.6e-34 151.0 124 53.2
TPR.G25301 Trifolium pratense HOM05D005266 ORTHO05D006416 2.0e-29 134.0 117 55.6
TAR303G0001 Trochodendron aralioides HOM05D005266 ORTHO05D003403 3.6e-26 123.2 78 76.9
CBR_g26176 Chara braunii HOM05D005266 ORTHO05D006416 6.1e-26 122.5 160 33.8
CSS0028893 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 3.0e-25 120.2 74 74.3
MCO05G347 Micromonas commoda HOM05D005266 ORTHO05D006416 1.1e-19 101.7 365 25.8
TPR.G25299 Trifolium pratense HOM05D005266 ORTHO05D006416 3.2e-19 100.1 148 43.2
Thecc.02G222700 Theobroma cacao HOM05D005266 ORTHO05D006416 4.2e-19 99.8 169 35.5
CDE08G0252 Ceratophyllum demersum HOM05D005266 ORTHO05D006416 1.4e-17 94.7 95 45.3
FAN13G3269 Fragaria x ananassa HOM05D000100 ORTHO05D000052 2.0e-16 90.9 70 61.4
Hund07659 Selenicereus undatus HOM05D005266 ORTHO05D006416 3.3e-16 90.1 176 33.5
FAN18G1945 Fragaria x ananassa HOM05D005266 ORTHO05D006416 4.4e-16 89.7 70 62.9
Thecc.02G199200 Theobroma cacao HOM05D005266 ORTHO05D006416 7.5e-16 89.0 186 32.8
Cre03.g192000 Chlamydomonas reinhardtii HOM05D005266 ORTHO05D006416 8.2e-15 85.5 329 24.3
Hund08759 Selenicereus undatus HOM05D005266 ORTHO05D006416 4.5e-13 79.7 215 27.9
PRCOL_00003916 Prasinoderma coloniale HOM05D001416 ORTHO05D002549 8.5e-12 75.5 307 25.4
Cre17.g715750 Chlamydomonas reinhardtii HOM05D002410 ORTHO05D002805 1.1e-11 75.1 305 23.6
Rhsim03G0018500 Rhododendron simsii HOM05D005266 ORTHO05D006416 1.9e-11 74.3 37 81.1
Solyc03g120900.3 Solanum lycopersicum HOM05D002410 ORTHO05D002805 1.9e-11 74.3 321 23.4
arahy.Tifrunner.gnm1.ann1.75V7EI Arachis hypogaea HOM05D002410 ORTHO05D002805 3.2e-11 73.6 310 22.6
arahy.Tifrunner.gnm1.ann1.U3UXI3 Arachis hypogaea HOM05D002410 ORTHO05D002805 3.2e-11 73.6 310 22.6
PGSC0003DMG400002531 Solanum tuberosum HOM05D002410 ORTHO05D002805 4.2e-11 73.2 322 23.0
Phvul.007G262701 Phaseolus vulgaris HOM05D002410 ORTHO05D002805 5.5e-11 72.8 310 21.6
VMungo0720G0984 Vigna mungo HOM05D002410 ORTHO05D002805 7.2e-11 72.4 310 22.3
Thecc.03G165000 Theobroma cacao HOM05D005266 ORTHO05D006416 9.4e-11 72.0 44 70.5
Glyma.08G320100 Glycine max HOM05D002410 ORTHO05D002805 1.6e-10 71.2 310 21.6
MSTRG.15497 Avicennia marina HOM05D002410 ORTHO05D002805 2.1e-10 70.9 314 20.1
Glyma.18G092300 Glycine max HOM05D002410 ORTHO05D002805 2.7e-10 70.5 310 21.6
Phvul.007G145400 Phaseolus vulgaris HOM05D002410 ORTHO05D002805 2.7e-10 70.5 310 21.3
arahy.Tifrunner.gnm1.ann1.59ZEFF Arachis hypogaea HOM05D002410 ORTHO05D002805 3.6e-10 70.1 312 22.8
arahy.Tifrunner.gnm1.ann1.V00M5D Arachis hypogaea HOM05D002410 ORTHO05D002805 3.6e-10 70.1 312 23.1
SGA_v2.0_scaffold135G34821 Striga asiatica HOM05D002410 ORTHO05D002805 6.1e-10 69.3 306 21.2
Lalb_Chr15g0081621 Lupinus albus HOM05D002410 ORTHO05D002805 8.0e-10 68.9 314 22.3
Dinv30449 Davidia involucrata HOM05D002410 ORTHO05D002805 1.8e-09 67.8 307 20.8
Lsat_1_v5_gn_6_4801 Lactuca sativa HOM05D002410 ORTHO05D002805 2.3e-09 67.4 306 19.6
Cfa003660 Carpinus fangiana HOM05D002410 ORTHO05D002805 5.2e-09 66.2 310 21.3
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 6.8e-09 65.9 310 20.6
Lsat_1_v5_gn_3_9061 Lactuca sativa HOM05D002410 ORTHO05D002805 8.8e-09 65.5 325 20.3
Cfa026486 Carpinus fangiana HOM05D002410 ORTHO05D002805 1.2e-08 65.1 320 22.5
MBI01_g05788_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 1.5e-08 64.7 54 53.7
MBI01_g28590_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 1.5e-08 64.7 41 68.3
Atru.chr1.3501 Acer truncatum HOM05D002410 ORTHO05D002805 2.6e-08 63.9 330 18.8
Hund08403 Selenicereus undatus HOM05D006468 ORTHO05D006908 3.4e-08 63.5 38 68.4
QL05p020497 Quercus lobata HOM05D002410 ORTHO05D002805 4.4e-08 63.2 310 20.6
Aqoxy7G01460 Aquilegia oxysepala HOM05D002410 ORTHO05D002805 7.5e-08 62.4 328 18.3
AUR62031909 Chenopodium quinoa HOM05D002410 ORTHO05D002805 7.5e-08 62.4 308 20.1
Rhsim10G0147400 Rhododendron simsii HOM05D005266 ORTHO05D006416 7.5e-08 62.4 38 71.1
Hund00690 Selenicereus undatus HOM05D002410 ORTHO05D002805 1.3e-07 61.6 310 20.3
EL10Ac9g21211 Beta vulgaris HOM05D002410 ORTHO05D002805 2.2e-07 60.8 306 19.3
HanXRQChr13g0396501 Helianthus annuus HOM05D002410 ORTHO05D002805 2.2e-07 60.8 306 19.0
TPR.G32052 Trifolium pratense HOM05D000002 ORTHO05D000001 3.7e-07 60.1 149 29.5
ECA248G0849 Erigeron canadensis HOM05D002410 ORTHO05D002805 4.8e-07 59.7 125 28.0
AUR62022201 Chenopodium quinoa HOM05D002410 ORTHO05D002805 6.3e-07 59.3 306 19.0
Haze_15833 Corylus avellana HOM05D002410 ORTHO05D002805 1.1e-06 58.5 304 20.4
COL.COLO4_15392 Corchorus olitorius HOM05D005266 ORTHO05D006416 9.1e-06 55.5 46 56.5


User provided reference genes

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