Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 0.0e+00 1488.4 772 100.0
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 0.0e+00 1476.5 772 99.1
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 0.0e+00 1460.7 772 98.1
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1380.5 777 90.6
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1345.9 821 86.5
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1307.7 790 86.2
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 0.0e+00 1245.3 705 91.8
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1212.2 774 80.4
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 0.0e+00 1211.4 773 81.0
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1208.7 779 80.1
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1208.0 770 80.9
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1207.6 779 79.8
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1204.1 755 81.3
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1196.0 784 78.7
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1176.8 763 79.7
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1170.2 742 80.7
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 0.0e+00 1168.7 776 78.7
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1166.4 795 77.6
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1164.4 773 78.5
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1164.1 776 76.9
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 0.0e+00 1163.3 783 76.0
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1160.6 780 77.7
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1159.8 791 77.5
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1159.1 750 79.3
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1158.7 795 77.4
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1156.7 782 77.6
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1150.6 782 75.8
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 0.0e+00 1150.6 776 77.1
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1149.4 787 75.9
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1147.5 786 76.7
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1146.7 754 77.9
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1146.3 735 79.5
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1142.1 770 76.4
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1140.6 697 81.8
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 0.0e+00 1139.0 772 75.9
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1134.8 736 78.3
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1134.0 782 76.7
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1131.3 790 74.2
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 0.0e+00 1130.9 784 74.7
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1124.4 780 74.9
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1124.4 730 78.2
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1124.0 773 75.7
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1122.8 802 73.4
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 0.0e+00 1122.8 719 80.3
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 0.0e+00 1122.5 737 78.0
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 0.0e+00 1114.0 717 79.5
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 0.0e+00 1107.0 757 75.3
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 0.0e+00 1105.1 773 75.7
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 0.0e+00 1102.0 750 75.3
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 0.0e+00 1094.7 731 76.6
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 0.0e+00 1088.6 795 71.6
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 0.0e+00 1080.1 729 75.7
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 0.0e+00 1079.7 775 73.0
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 0.0e+00 1075.8 774 71.3
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 5.3e-312 1074.7 768 73.0
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 1.6e-311 1072.4 769 73.1
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 3.1e-310 1068.1 841 68.1
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 5.2e-310 1067.4 788 70.7
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 6.8e-310 1067.0 789 74.0
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 4.4e-309 1064.3 731 74.8
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 8.3e-308 1060.1 728 74.3
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.1e-307 1059.7 759 72.9
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 4.1e-307 1057.7 653 82.7
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 7.1e-307 1057.0 803 70.0
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 4.6e-306 1054.3 727 74.6
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 1.0e-305 1053.1 786 71.6
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 1.0e-305 1053.1 781 71.8
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 2.3e-305 1052.0 782 72.5
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 3.9e-305 1051.2 756 73.3
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 1.5e-304 1049.3 727 73.7
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 1.5e-304 1049.3 727 73.7
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 9.5e-304 1046.6 726 74.2
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 1.2e-303 1046.2 780 71.2
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 2.8e-303 1045.0 781 72.0
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 9.9e-301 1036.6 783 72.0
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 9.9e-301 1036.6 756 71.0
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 2.9e-300 1035.0 771 70.7
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 6.4e-300 1033.9 776 71.3
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 8.3e-300 1033.5 781 71.1
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 4.1e-299 1031.2 771 70.9
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 1.6e-298 1029.2 771 71.5
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 2.1e-298 1028.9 760 71.3
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 2.7e-298 1028.5 771 71.3
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 2.7e-298 1028.5 682 77.1
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 4.6e-298 1027.7 764 70.0
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 1.7e-297 1025.8 781 71.2
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 6.6e-297 1023.8 779 69.1
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 1.9e-296 1022.3 770 71.0
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 1.9e-296 1022.3 770 70.9
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 3.3e-296 1021.5 782 68.9
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 4.4e-293 1011.1 780 67.7
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 3.8e-292 1008.1 764 71.2
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 4.9e-292 1007.7 775 68.3
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 2.4e-291 1005.4 718 73.3
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.8e-287 991.9 699 73.7
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 8.1e-287 990.3 733 71.8
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 1.2e-245 853.6 631 73.7
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 7.7e-245 850.9 560 74.8
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 1.0e-244 850.5 560 74.8
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 3.6e-242 842.0 727 58.7
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 2.9e-236 822.4 742 60.0
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.1e-232 810.4 731 57.0
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 2.0e-229 799.7 723 59.1
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.4e-225 786.9 544 68.2
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 2.3e-225 786.2 725 57.7
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 5.2e-217 758.4 531 68.2
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 1.7e-215 753.4 573 64.9
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.0e-201 707.6 512 67.0
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.6e-192 676.4 414 79.2
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 2.2e-175 620.2 403 77.4
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.5e-168 597.4 414 68.4
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 3.8e-151 539.7 343 78.1
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.8e-130 470.3 269 82.5
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 1.3e-103 381.7 693 36.7
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 6.5e-103 379.4 295 68.5
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 1.6e-101 374.8 491 43.8
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.8e-98 364.0 271 65.7
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 1.2e-91 342.0 624 40.5
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 1.3e-87 328.6 277 66.8
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 1.1e-70 272.3 351 47.9
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 3.6e-69 267.3 642 31.6
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 1.5e-43 182.2 99 84.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 2.6e-35 154.8 83 83.1
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 8.4e-34 149.8 139 59.0
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 5.5e-33 147.1 109 68.8
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 5.0e-26 124.0 116 60.3
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 3.2e-25 121.3 143 46.9
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 6.3e-21 107.1 54 85.2
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 2.1e-16 92.0 103 47.6
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 4.6e-16 90.9 147 39.5
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 2.4e-12 78.6 81 55.6
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 2.4e-12 78.6 74 60.8
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 1.3e-10 72.8 41 80.5
PRCOL_00000676 Prasinoderma coloniale HOM05D008447 ORTHO05D010638 7.9e-08 63.5 315 24.8
Gohir.D01G027900 Gossypium hirsutum HOM05D008447 ORTHO05D010638 1.8e-07 62.4 323 22.9
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 3.9e-07 61.2 80 42.5
Gorai.002G037200 Gossypium raimondii HOM05D008447 ORTHO05D010638 6.7e-07 60.5 410 22.9
Gohir.A01G040200 Gossypium hirsutum HOM05D008447 ORTHO05D010638 8.8e-07 60.1 347 25.4
Prupe.7G070400 Prunus persica HOM05D008447 ORTHO05D010638 8.8e-07 60.1 270 25.6
Actinidia37487 Actinidia chinensis HOM05D005554 ORTHO05D058019 2.6e-06 58.5 64 54.7
MD12G1063100 Malus domestica HOM05D008447 ORTHO05D010638 3.3e-06 58.2 281 26.7
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 4.4e-06 57.8 85 38.8
Gohir.D01G027950 Gossypium hirsutum HOM05D008447 ORTHO05D010638 5.7e-06 57.4 363 25.3
PSO384G3680 Papaver somniferum HOM05D008447 ORTHO05D010638 9.7e-06 56.6 258 24.0


User provided reference genes

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