Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g028580 Solanum pennellii HOM05D007750 ORTHO05D009803 1.1e-107 394.8 203 100.0
PGSC0003DMG400022754 Solanum tuberosum HOM05D007750 ORTHO05D009803 2.0e-101 374.0 203 95.6
CAN.G981.43 Capsicum annuum HOM05D007750 ORTHO05D009803 1.3e-89 334.7 202 86.1
Haze_24099 Corylus avellana HOM05D007750 ORTHO05D009803 5.3e-54 216.5 202 57.4
Manes.02G132900 Manihot esculenta HOM05D007750 ORTHO05D009803 7.7e-53 212.6 196 57.7
CSS0037746 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 1.3e-52 211.8 199 54.8
CiPaw.13G094000 Carya illinoinensis HOM05D007750 ORTHO05D009803 3.8e-52 210.3 199 56.3
Cfa011507 Carpinus fangiana HOM05D007750 ORTHO05D009803 5.0e-52 209.9 202 55.9
RcHm_v2.0_Chr5g0064911 Rosa chinensis HOM05D007750 ORTHO05D009803 6.5e-52 209.5 200 56.0
QL01p031803 Quercus lobata HOM05D007750 ORTHO05D009803 3.2e-51 207.2 199 56.3
GSVIVG01024955001 Vitis vinifera HOM05D007750 ORTHO05D009803 1.2e-50 205.3 200 54.5
RcHm_v2.0_Chr5g0064671 Rosa chinensis HOM05D007750 ORTHO05D009803 2.1e-50 204.5 192 56.2
TAR623G1496 Trochodendron aralioides HOM05D007750 ORTHO05D009803 2.7e-50 204.1 196 55.1
Prupe.6G076800 Prunus persica HOM05D007750 ORTHO05D009803 2.3e-49 201.1 199 54.8
CSS0028051 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 6.8e-49 199.5 182 54.9
Migut.N02392 Erythranthe guttata HOM05D007750 ORTHO05D009803 6.8e-49 199.5 198 53.0
Thhalv10028537m.g Eutrema salsugineum HOM05D007750 ORTHO05D009803 4.4e-48 196.8 204 51.5
FvH4_3g36170 Fragaria vesca HOM05D007750 ORTHO05D009803 7.5e-48 196.1 206 50.5
Atru.chr3.3911 Acer truncatum HOM05D007750 ORTHO05D009803 2.8e-47 194.1 203 52.7
Nn1g04208 Nelumbo nucifera HOM05D007750 ORTHO05D009803 2.8e-47 194.1 200 50.5
Thecc.09G321000 Theobroma cacao HOM05D007750 ORTHO05D009803 3.7e-47 193.7 193 52.8
Gorai.003G131800 Gossypium raimondii HOM05D007750 ORTHO05D009803 4.8e-47 193.4 196 54.1
Duzib150G0757 Durio zibethinus HOM05D007750 ORTHO05D009803 6.3e-47 193.0 207 49.3
Gohir.D03G125600 Gossypium hirsutum HOM05D007750 ORTHO05D009803 8.3e-47 192.6 196 54.1
Gohir.A03G042099 Gossypium hirsutum HOM05D007750 ORTHO05D009803 1.8e-46 191.4 196 53.1
FAN16G0393 Fragaria x ananassa HOM05D007750 ORTHO05D009803 2.4e-46 191.0 192 52.1
MD03G1092900 Malus domestica HOM05D007750 ORTHO05D009803 2.4e-46 191.0 199 50.8
FAN11G0214 Fragaria x ananassa HOM05D007750 ORTHO05D009803 1.6e-45 188.3 192 51.6
FAN25G2068 Fragaria x ananassa HOM05D007750 ORTHO05D009803 2.0e-45 188.0 192 51.6
Cc01_g12900 Coffea canephora HOM05D007750 ORTHO05D009803 3.5e-45 187.2 194 50.5
Cpa.g.sc81.142 Carica papaya HOM05D007750 ORTHO05D009803 1.3e-44 185.3 193 50.3
FAN21G3841 Fragaria x ananassa HOM05D007750 ORTHO05D009803 2.2e-44 184.5 192 50.5
Potri.017G131600 Populus trichocarpa HOM05D007750 ORTHO05D009803 2.2e-44 184.5 200 50.0
THA.LOC104801704 Tarenaya hassleriana HOM05D007750 ORTHO05D009803 2.9e-44 184.1 195 50.8
CANSAT54G1947 Cannabis sativa HOM05D007750 ORTHO05D009803 5.0e-44 183.3 199 48.7
Lj2g0016115 Lotus japonicus HOM05D007750 ORTHO05D009803 8.5e-44 182.6 197 47.2
BraA09t38312Z Brassica rapa HOM05D007750 ORTHO05D009803 1.1e-43 182.2 199 48.7
Aqoxy496s001 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 1.9e-43 181.4 197 50.3
Aqoxy4G02931 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 1.9e-43 181.4 197 50.3
Aa31LG9G10670 Aethionema arabicum HOM05D007750 ORTHO05D009803 2.5e-43 181.0 203 48.3
A09p27430 Brassica napus HOM05D007750 ORTHO05D009803 4.2e-43 180.3 199 48.2
Psat1g083360 Pisum sativum HOM05D007750 ORTHO05D009803 9.5e-43 179.1 199 48.7
Carub.0006s3078 Capsella rubella HOM05D007750 ORTHO05D009803 1.2e-42 178.7 204 46.6
Lalb_Chr12g0196171 Lupinus albus HOM05D007750 ORTHO05D009803 1.2e-42 178.7 211 47.4
arahy.Tifrunner.gnm1.ann1.T5BWJF Arachis hypogaea HOM05D007750 ORTHO05D009803 1.6e-42 178.3 195 50.8
Aqoxy7G03815 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 2.1e-42 177.9 197 49.2
arahy.Tifrunner.gnm1.ann1.7C1NTJ Arachis hypogaea HOM05D007750 ORTHO05D009803 2.1e-42 177.9 191 51.3
Medtr6g022260 Medicago truncatula HOM05D007750 ORTHO05D009803 2.1e-42 177.9 198 49.0
Sp6g05780 Schrenkiella parvula HOM05D007750 ORTHO05D009803 2.1e-42 177.9 201 48.8
CARHR254670 Cardamine hirsuta HOM05D007750 ORTHO05D009803 3.6e-42 177.2 205 47.8
Phvul.003G092000 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 3.6e-42 177.2 197 47.7
TPR.G7494 Trifolium pratense HOM05D007750 ORTHO05D009803 4.7e-42 176.8 199 48.2
SGA_v2.0_scaffold9G04983 Striga asiatica HOM05D007750 ORTHO05D009803 8.0e-42 176.0 194 48.5
Phvul.003G091900 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 1.4e-41 175.3 206 45.6
Ca_04398_v3 Cicer arietinum L. HOM05D007750 ORTHO05D009803 2.3e-41 174.5 199 46.2
C09p34750 Brassica napus HOM05D007750 ORTHO05D009803 2.6e-40 171.0 204 45.6
BolC9t56321H Brassica oleracea HOM05D007750 ORTHO05D009803 2.6e-40 171.0 204 45.6
SalBow3G4043 Salvia bowleyana HOM05D007750 ORTHO05D009803 3.4e-40 170.6 203 46.8
MBI14_g36920_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 5.7e-40 169.9 197 45.2
Glyma.06G033500 Glycine max HOM05D007750 ORTHO05D009803 1.3e-39 168.7 199 48.2
Rhsim13G0082600 Rhododendron simsii HOM05D007750 ORTHO05D009803 1.7e-39 168.3 153 56.2
Glyma.07G217200 Glycine max HOM05D007750 ORTHO05D009803 2.2e-39 167.9 199 48.7
VMungo1215G1573 Vigna mungo HOM05D007750 ORTHO05D009803 8.3e-39 166.0 191 47.6
Glyma.17G016400 Glycine max HOM05D007750 ORTHO05D009803 2.0e-37 161.4 199 46.2
Nitab4.5_0007891g0010 Nicotiana tabacum HOM05D007750 ORTHO05D009803 5.2e-33 146.7 85 82.4
AT4G11690 Arabidopsis thaliana HOM05D007750 ORTHO05D009803 1.5e-32 145.2 201 42.3
Actinidia07034 Actinidia chinensis HOM05D007750 ORTHO05D009803 2.2e-31 141.4 184 46.2
Nitab4.5_0001714g0210 Nicotiana tabacum HOM05D007750 ORTHO05D009803 3.7e-31 140.6 85 80.0
Sc21g0005800 Simmondsia chinensis HOM05D007750 ORTHO05D009803 4.1e-30 137.1 195 43.1
Sabra17G0109600 Salix brachista HOM05D007750 ORTHO05D009803 3.0e-28 131.0 109 56.0
ATR0559G149 Amborella trichopoda HOM05D007750 ORTHO05D009803 3.3e-27 127.5 209 37.3
COL.COLO4_18513 Corchorus olitorius HOM05D007750 ORTHO05D009803 9.5e-27 125.9 202 39.6
PGR083G0657 Punica granatum HOM05D007750 ORTHO05D009803 1.6e-26 125.2 203 43.8
Lj1P153T20 Lonicera japonica HOM05D007750 ORTHO05D009803 1.4e-25 122.1 114 48.2
Ciclev10030066m.g Citrus clementina HOM05D007750 ORTHO05D009803 5.2e-25 120.2 201 40.8
BcaB01g01674 Brassica carinata HOM05D007750 ORTHO05D009803 6.8e-25 119.8 190 38.9
AUR62018631 Chenopodium quinoa HOM05D007750 ORTHO05D009803 4.4e-24 117.1 170 42.9
ClCG09G016230 Citrullus lanatus HOM05D007750 ORTHO05D009803 5.4e-22 110.2 141 41.1
AL6G46300 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 9.5e-19 99.4 85 52.9
AL6G46430 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 9.5e-19 99.4 85 52.9
Glyma.07G257600 Glycine max HOM05D007750 ORTHO05D009803 9.5e-19 99.4 196 37.2
CsaV3_7G007090 Cucumis sativus L. HOM05D007750 ORTHO05D009803 5.2e-17 93.6 138 40.6
EL10Ac5g12003 Beta vulgaris HOM05D007750 ORTHO05D009803 2.9e-15 87.8 85 45.9
Oeu012315.1 Olea europaea HOM05D007750 ORTHO05D009803 1.9e-14 85.1 85 43.5
Eucgr.H02967 Eucalyptus grandis HOM05D007750 ORTHO05D009803 7.8e-13 79.7 86 41.9
Hma1.2p1_0418F.1_g149220 Hydrangea macrophylla HOM05D007750 ORTHO05D009803 3.0e-12 77.8 59 61.0
COL.COLO4_16723 Corchorus olitorius HOM05D007551 ORTHO05D009424 8.9e-09 66.2 191 26.7
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 2.0e-08 65.1 195 23.6
SEGI_21882 Sequoiadendron giganteum HOM05D007750 ORTHO05D009431 2.0e-08 65.1 136 30.1
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.0e-08 65.1 186 29.6
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 3.4e-08 64.3 195 23.6
Migut.H00180 Erythranthe guttata HOM05D000891 ORTHO05D000761 9.9e-08 62.8 114 31.6
EL10Ac9g21918 Beta vulgaris HOM05D006819 ORTHO05D008763 4.9e-07 60.5 114 30.7
HPP92_020726 Vanilla planifolia HOM05D000891 ORTHO05D000761 4.9e-07 60.5 107 30.8
ATR0618G378 Amborella trichopoda HOM05D000891 ORTHO05D000761 6.4e-07 60.1 101 31.7
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 6.4e-07 60.1 110 30.0
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 8.4e-07 59.7 169 28.4
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 1.1e-06 59.3 105 27.6
Thecc.03G322800 Theobroma cacao HOM05D007551 ORTHO05D009424 1.1e-06 59.3 189 27.0
ECA236G0552 Erigeron canadensis HOM05D001779 ORTHO05D001753 1.4e-06 58.9 96 30.2
HanXRQChr04g0108171 Helianthus annuus HOM05D001779 ORTHO05D001753 1.4e-06 58.9 96 29.2
MSTRG.23543 Avicennia marina HOM05D000891 ORTHO05D000761 1.9e-06 58.5 122 31.1
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 1.9e-06 58.5 111 27.9
PSO675G0716 Papaver somniferum HOM05D000162 ORTHO05D000090 1.9e-06 58.5 128 26.6
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 2.4e-06 58.2 197 24.9
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 2.4e-06 58.2 110 28.2
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 2.4e-06 58.2 112 29.5
Actinidia04473 Actinidia chinensis HOM05D000162 ORTHO05D000090 3.2e-06 57.8 96 30.2
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 4.1e-06 57.4 110 27.3
ATR0807G010 Amborella trichopoda HOM05D006556 ORTHO05D008146 4.1e-06 57.4 114 28.9
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 4.1e-06 57.4 191 23.0
AL3G20860 Arabidopsis lyrata HOM05D000855 ORTHO05D008530 4.1e-06 57.4 110 25.5
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 4.1e-06 57.4 110 25.5
CDE05G0100 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 4.1e-06 57.4 105 26.7
Oeu014918.1 Olea europaea HOM05D000891 ORTHO05D000761 4.1e-06 57.4 98 34.7
VMungo0331G1630 Vigna mungo HOM05D002986 ORTHO05D007611 4.1e-06 57.4 184 25.5
Cc07_g09260 Coffea canephora HOM05D000891 ORTHO05D000761 5.4e-06 57.0 112 31.2
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 5.4e-06 57.0 120 27.5
Thhalv10020113m.g Eutrema salsugineum HOM05D000855 ORTHO05D008530 5.4e-06 57.0 110 26.4
HanXRQChr04g0120331 Helianthus annuus HOM05D002986 ORTHO05D003966 5.4e-06 57.0 147 27.9
vmacro08165 Vaccinium macrocarpon HOM05D007202 ORTHO05D009125 5.4e-06 57.0 107 29.9
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 7.1e-06 56.6 197 22.8
BcaC05g29690 Brassica carinata HOM05D000855 ORTHO05D008530 7.1e-06 56.6 110 25.5
A05p39410 Brassica napus HOM05D000855 ORTHO05D008530 7.1e-06 56.6 110 25.5
C05p58440 Brassica napus HOM05D000855 ORTHO05D008530 7.1e-06 56.6 110 25.5
BolC5t34496H Brassica oleracea HOM05D000855 ORTHO05D008530 7.1e-06 56.6 110 25.5
BraA05t22722Z Brassica rapa HOM05D000855 ORTHO05D008530 7.1e-06 56.6 110 25.5
CANSAT80G1453 Cannabis sativa HOM05D000855 ORTHO05D008530 7.1e-06 56.6 110 25.5
Carub.0003s0874 Capsella rubella HOM05D000855 ORTHO05D008530 7.1e-06 56.6 110 25.5
Cfa017505 Carpinus fangiana HOM05D000855 ORTHO05D008530 7.1e-06 56.6 110 26.4
Cc02_g04950 Coffea canephora HOM05D000104 ORTHO05D009920 7.1e-06 56.6 182 27.5
Haze_20657 Corylus avellana HOM05D000855 ORTHO05D008530 7.1e-06 56.6 110 27.3
HanXRQChr13g0420861 Helianthus annuus HOM05D000162 ORTHO05D000090 7.1e-06 56.6 154 27.9
Lsat_1_v5_gn_8_89800 Lactuca sativa HOM05D001779 ORTHO05D001753 7.1e-06 56.6 96 31.2
Lalb_Chr01g0006871 Lupinus albus HOM05D002453 ORTHO05D008746 7.1e-06 56.6 125 29.6
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 7.1e-06 56.6 110 26.4
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 7.1e-06 56.6 157 29.9
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 7.1e-06 56.6 157 29.9
Potri.005G003200 Populus trichocarpa HOM05D007830 ORTHO05D009947 9.2e-06 56.2 114 30.7
Rhsim08G0214900 Rhododendron simsii HOM05D006819 ORTHO05D008763 9.2e-06 56.2 108 30.6
SGA_v2.0_scaffold171G38942 Striga asiatica HOM05D001779 ORTHO05D001753 9.2e-06 56.2 98 29.6
THA.LOC104826985 Tarenaya hassleriana HOM05D000855 ORTHO05D008530 9.2e-06 56.2 107 27.1


User provided reference genes

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