Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 4.7e-101 371.7 265 100.0
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 6.8e-100 367.9 265 97.0
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 4.1e-97 358.6 265 98.5
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 4.0e-92 342.0 266 92.1
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 2.0e-88 329.7 270 92.6
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 1.5e-86 323.6 270 91.9
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 1.6e-85 320.1 269 88.8
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 6.4e-74 281.6 273 81.7
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 7.8e-72 274.6 270 79.3
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 1.5e-70 270.4 278 79.1
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 9.5e-70 267.7 268 80.6
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 3.6e-69 265.8 269 79.9
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 4.7e-69 265.4 284 77.5
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 1.8e-68 263.5 267 78.7
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 5.2e-68 261.9 266 79.3
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 1.3e-66 257.3 272 68.0
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 4.9e-66 255.4 265 76.2
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 4.9e-66 255.4 265 76.2
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 6.4e-66 255.0 273 76.2
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 8.3e-66 254.6 267 78.3
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 4.1e-65 252.3 284 73.6
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 4.1e-65 252.3 269 77.0
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 9.2e-65 251.1 283 74.2
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 1.2e-64 250.8 280 75.0
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 1.2e-64 250.8 273 77.3
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 2.1e-64 250.0 272 76.5
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 2.1e-64 250.0 277 76.5
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 2.7e-64 249.6 281 74.0
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 3.5e-64 249.2 281 75.1
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 6.0e-64 248.4 278 74.5
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 7.8e-64 248.1 280 75.7
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 7.8e-64 248.1 281 75.4
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 1.3e-63 247.3 280 73.6
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 2.3e-63 246.5 272 76.8
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 3.0e-63 246.1 281 70.8
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 3.9e-63 245.7 280 74.6
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 3.9e-63 245.7 278 73.4
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 5.1e-63 245.4 280 75.4
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 5.1e-63 245.4 280 75.4
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 8.6e-63 244.6 280 75.0
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 8.6e-63 244.6 283 73.1
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 1.1e-62 244.2 250 64.0
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 1.5e-62 243.8 280 75.7
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 1.5e-62 243.8 281 73.3
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 1.5e-62 243.8 280 68.9
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 1.5e-62 243.8 271 76.4
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 1.9e-62 243.4 286 72.0
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 2.5e-62 243.0 284 71.8
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 3.3e-62 242.7 281 73.0
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 4.3e-62 242.3 219 87.7
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 4.3e-62 242.3 280 70.0
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 4.3e-62 242.3 270 76.3
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 7.3e-62 241.5 270 75.6
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 7.3e-62 241.5 281 73.0
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 9.5e-62 241.1 265 76.6
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 2.1e-61 240.0 281 67.6
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 2.1e-61 240.0 264 64.4
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 2.1e-61 240.0 288 66.3
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 4.7e-61 238.8 313 49.8
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 4.7e-61 238.8 272 71.3
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 1.4e-60 237.3 281 74.4
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 1.8e-60 236.9 289 61.6
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 1.8e-60 236.9 267 74.9
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 1.8e-60 236.9 260 75.4
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 8.9e-60 234.6 281 63.3
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 1.5e-59 233.8 286 69.2
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 3.4e-59 232.6 270 61.1
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 4.4e-59 232.3 231 82.7
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 5.8e-59 231.9 281 72.6
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 5.8e-59 231.9 270 73.0
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 9.9e-59 231.1 308 68.8
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 6.4e-58 228.4 294 69.4
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 6.4e-58 228.4 294 69.4
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 1.1e-57 227.6 283 72.8
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 3.2e-57 226.1 226 83.6
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 6.0e-56 221.9 281 72.2
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 7.8e-56 221.5 196 89.8
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 7.8e-56 221.5 215 73.5
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 6.6e-55 218.4 251 74.9
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 8.7e-55 218.0 196 86.2
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 3.3e-54 216.1 254 55.9
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 3.8e-50 202.6 364 42.0
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 4.9e-50 202.2 225 65.8
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 1.1e-49 201.1 193 75.6
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 3.9e-47 192.6 212 65.6
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 5.1e-47 192.2 182 83.5
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 7.3e-46 188.3 216 63.0
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 3.6e-45 186.0 226 71.7
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 4.2e-41 172.6 217 54.4
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 1.0e-39 167.9 233 48.5
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 3.0e-39 166.4 90 88.9
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 5.1e-39 165.6 88 88.6
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 7.4e-38 161.8 88 87.5
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 2.1e-37 160.2 85 88.2
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 4.8e-37 159.1 85 89.4
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 5.3e-36 155.6 85 88.2
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 5.3e-36 155.6 90 83.3
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 5.3e-36 155.6 90 83.3
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 1.1e-33 147.9 191 53.4
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 6.7e-31 138.7 213 73.2
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 3.8e-26 122.9 184 64.1
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 2.1e-24 117.1 202 69.3
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 4.6e-24 115.9 143 60.1
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 4.3e-22 109.4 117 54.7
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 5.7e-22 109.0 122 55.7
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.4e-20 104.4 68 77.9
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 2.6e-19 100.1 69 75.4
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 1.5e-14 84.3 53 75.5
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 2.0e-14 84.0 200 45.0
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 1.7e-13 80.9 45 84.4
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 9.1e-12 75.1 90 52.2
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 4.5e-11 72.8 44 77.3
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 1.6e-08 64.3 40 77.5
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 1.8e-07 60.8 53 58.5


User provided reference genes

Program Settings