Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g026630 Solanum pennellii HOM05D003706 ORTHO05D004487 1.6e-51 205.7 97 100.0
Solyc08g078140.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 9.3e-39 163.3 77 100.0
PGSC0003DMG400026229 Solanum tuberosum HOM05D003706 ORTHO05D004487 3.9e-37 157.9 77 96.1
Oeu040685.1 Olea europaea HOM05D003706 ORTHO05D004487 1.7e-32 142.5 75 86.7
Nitab4.5_0006805g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 3.8e-32 141.4 73 89.0
CAN.G1856.6 Capsicum annuum HOM05D003706 ORTHO05D004487 1.4e-31 139.4 79 86.1
Peaxi162Scf00190g01214 Petunia axillaris HOM05D003706 ORTHO05D004487 4.6e-30 134.4 73 84.9
SGA_v2.0_scaffold104G30203 Striga asiatica HOM05D003706 ORTHO05D004487 4.6e-30 134.4 73 84.9
Dinv21679 Davidia involucrata HOM05D003706 ORTHO05D004487 7.9e-30 133.7 79 79.7
MSTRG.12138 Avicennia marina HOM05D003706 ORTHO05D004487 1.3e-29 132.9 74 81.1
Migut.A01026 Erythranthe guttata HOM05D003706 ORTHO05D004487 1.3e-29 132.9 79 77.2
THA.LOC104813337 Tarenaya hassleriana HOM05D003706 ORTHO05D004487 3.0e-29 131.7 74 78.4
Dinv28848 Davidia involucrata HOM05D003706 ORTHO05D004487 5.1e-29 131.0 79 78.5
Dinv39188 Davidia involucrata HOM05D003706 ORTHO05D004487 5.1e-29 131.0 79 78.5
Solyc06g060850.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 5.1e-29 131.0 72 83.3
Sopen06g021000 Solanum pennellii HOM05D003706 ORTHO05D004487 6.7e-29 130.6 72 83.3
SalBow7G0213 Salvia bowleyana HOM05D003706 ORTHO05D004487 8.7e-29 130.2 73 79.5
PGSC0003DMG400024158 Solanum tuberosum HOM05D003706 ORTHO05D004487 8.7e-29 130.2 72 83.3
BraA03t14138Z Brassica rapa HOM05D003706 ORTHO05D004487 1.5e-28 129.4 74 78.4
Lalb_Chr05g0221021 Lupinus albus HOM05D003706 ORTHO05D004487 1.5e-28 129.4 74 78.4
Actinidia25892 Actinidia chinensis HOM05D003706 ORTHO05D004487 1.9e-28 129.0 74 78.4
Nitab4.5_0000618g0150 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.9e-28 129.0 73 80.8
Phvul.002G000300 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 1.9e-28 129.0 83 74.7
DCAR_000641 Daucus carota HOM05D003706 ORTHO05D004487 2.5e-28 128.6 73 82.2
Nitab4.5_0002206g0070 Nicotiana tabacum HOM05D003706 ORTHO05D004487 2.5e-28 128.6 73 79.5
Oeu031158.1 Olea europaea HOM05D003706 ORTHO05D004487 2.5e-28 128.6 79 78.5
Actinidia02181 Actinidia chinensis HOM05D003706 ORTHO05D004487 3.3e-28 128.3 86 70.9
CANSAT21G1120 Cannabis sativa HOM05D003706 ORTHO05D004487 3.3e-28 128.3 74 79.7
Thhalv10026137m.g Eutrema salsugineum HOM05D003706 ORTHO05D004487 3.3e-28 128.3 74 77.0
TAR629G3078 Trochodendron aralioides HOM05D003706 ORTHO05D004487 3.3e-28 128.3 79 74.7
Aa31LG6G250 Aethionema arabicum HOM05D003706 ORTHO05D004487 4.3e-28 127.9 74 74.3
Carub.0007s2389 Capsella rubella HOM05D003706 ORTHO05D004487 4.3e-28 127.9 74 77.0
Glyma.01G206200 Glycine max HOM05D003706 ORTHO05D004487 4.3e-28 127.9 79 75.9
Potri.003G081000 Populus trichocarpa HOM05D003706 ORTHO05D004487 4.3e-28 127.9 70 82.9
TAR636G2892 Trochodendron aralioides HOM05D003706 ORTHO05D004487 4.3e-28 127.9 79 75.9
GSVIVG01004795001 Vitis vinifera HOM05D003706 ORTHO05D004487 5.6e-28 127.5 79 74.7
CSS0020819 Camellia sinensis var. sinensis HOM05D003706 ORTHO05D004487 7.4e-28 127.1 74 78.4
Lalb_Chr05g0214291 Lupinus albus HOM05D003706 ORTHO05D004487 7.4e-28 127.1 79 70.9
QL12p009718 Quercus lobata HOM05D003706 ORTHO05D004487 7.4e-28 127.1 74 77.0
EL10Ac5g12313 Beta vulgaris HOM05D003706 ORTHO05D004487 9.6e-28 126.7 78 73.1
BcaNung03459 Brassica carinata HOM05D003706 ORTHO05D004487 9.6e-28 126.7 74 75.7
A03p50490 Brassica napus HOM05D003706 ORTHO05D004487 9.6e-28 126.7 74 75.7
CARHR224210 Cardamine hirsuta HOM05D003706 ORTHO05D004487 9.6e-28 126.7 74 75.7
AT4G17510 Arabidopsis thaliana HOM05D003706 ORTHO05D004487 1.3e-27 126.3 74 74.3
Gohir.A08G166700 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.3e-27 126.3 79 70.9
Manes.01G085700 Manihot esculenta HOM05D003706 ORTHO05D004487 1.3e-27 126.3 79 73.4
vmacro00024 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 1.3e-27 126.3 73 78.1
AL7G37110 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 1.6e-27 125.9 74 75.7
BcaC06g33562 Brassica carinata HOM05D003706 ORTHO05D004487 1.6e-27 125.9 74 75.7
C07p48810 Brassica napus HOM05D003706 ORTHO05D004487 1.6e-27 125.9 74 75.7
BolC7t45389H Brassica oleracea HOM05D003706 ORTHO05D004487 1.6e-27 125.9 74 75.7
CiPaw.11G084300 Carya illinoinensis HOM05D003706 ORTHO05D004487 1.6e-27 125.9 79 73.4
Hma1.2p1_0821F.1_g224200 Hydrangea macrophylla HOM05D003706 ORTHO05D004487 2.1e-27 125.6 74 77.0
TWI15G0458 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 2.8e-27 125.2 79 74.7
DCAR_004606 Daucus carota HOM05D003706 ORTHO05D004487 3.7e-27 124.8 75 76.0
Gohir.D08G185500 Gossypium hirsutum HOM05D003706 ORTHO05D004487 3.7e-27 124.8 79 70.9
Gorai.004G194900 Gossypium raimondii HOM05D003706 ORTHO05D004487 3.7e-27 124.8 79 70.9
Lsat_1_v5_gn_9_30321 Lactuca sativa HOM05D003706 ORTHO05D004487 3.7e-27 124.8 73 78.1
Lalb_Chr16g0386511 Lupinus albus HOM05D003706 ORTHO05D004487 3.7e-27 124.8 74 75.7
Hund14510 Selenicereus undatus HOM05D003706 ORTHO05D004487 3.7e-27 124.8 74 78.4
BcaC09g51635 Brassica carinata HOM05D003706 ORTHO05D004487 4.8e-27 124.4 74 74.3
BcaNung00085 Brassica carinata HOM05D003706 ORTHO05D004487 4.8e-27 124.4 74 74.3
C01p11160 Brassica napus HOM05D003706 ORTHO05D004487 4.8e-27 124.4 74 74.3
BolC1t01081H Brassica oleracea HOM05D003706 ORTHO05D004487 4.8e-27 124.4 74 74.3
CAN.G62.15 Capsicum annuum HOM05D003706 ORTHO05D004487 4.8e-27 124.4 73 79.5
ClCG10G002430 Citrullus lanatus HOM05D003706 ORTHO05D004487 4.8e-27 124.4 74 74.3
QL12p009287 Quercus lobata HOM05D003706 ORTHO05D004487 4.8e-27 124.4 74 75.7
AL7G37120 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 6.2e-27 124.0 74 73.0
arahy.Tifrunner.gnm1.ann1.JF7LYS Arachis hypogaea HOM05D003706 ORTHO05D004487 6.2e-27 124.0 79 69.6
arahy.Tifrunner.gnm1.ann1.MI1D26 Arachis hypogaea HOM05D003706 ORTHO05D004487 6.2e-27 124.0 79 69.6
Cfa012680 Carpinus fangiana HOM05D003706 ORTHO05D004487 6.2e-27 124.0 79 74.7
Glyma.05G063800 Glycine max HOM05D003706 ORTHO05D004487 6.2e-27 124.0 79 70.9
Manes.02G042700 Manihot esculenta HOM05D003706 ORTHO05D004487 6.2e-27 124.0 74 75.7
Nitab4.5_0009301g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 6.2e-27 124.0 66 86.4
PGR042G3774 Punica granatum HOM05D003706 ORTHO05D004487 6.2e-27 124.0 79 72.2
vmacro00025 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 6.2e-27 124.0 75 77.3
Atru.chr9.1245 Acer truncatum HOM05D003706 ORTHO05D004487 8.1e-27 123.6 79 70.9
MELO3C013914.2 Cucumis melo HOM05D003706 ORTHO05D004487 8.1e-27 123.6 74 75.7
HanXRQChr16g0511641 Helianthus annuus HOM05D003706 ORTHO05D004487 8.1e-27 123.6 72 77.8
Sed0008996 Sechium edule HOM05D003706 ORTHO05D004487 8.1e-27 123.6 74 75.7
Ciclev10023537m.g Citrus clementina HOM05D003706 ORTHO05D004487 1.1e-26 123.2 74 75.7
Duzib068G0005 Durio zibethinus HOM05D003706 ORTHO05D004487 1.1e-26 123.2 79 68.4
A01p09590 Brassica napus HOM05D003706 ORTHO05D004487 1.4e-26 122.9 74 73.0
Carub.0007s2388 Capsella rubella HOM05D003706 ORTHO05D004487 1.4e-26 122.9 74 73.0
Glyma.17G145500 Glycine max HOM05D003706 ORTHO05D004487 1.4e-26 122.9 79 70.9
COL.COLO4_10024 Corchorus olitorius HOM05D003706 ORTHO05D004487 1.8e-26 122.5 79 68.4
arahy.Tifrunner.gnm1.ann1.PS7EZR Arachis hypogaea HOM05D003706 ORTHO05D004487 2.4e-26 122.1 74 74.3
AUR62007134 Chenopodium quinoa HOM05D003706 ORTHO05D004487 3.1e-26 121.7 78 73.1
AUR62018878 Chenopodium quinoa HOM05D003706 ORTHO05D004487 3.1e-26 121.7 78 73.1
Ciclev10022039m.g Citrus clementina HOM05D003706 ORTHO05D004487 3.1e-26 121.7 79 70.9
Eucgr.E00375 Eucalyptus grandis HOM05D003706 ORTHO05D004487 3.1e-26 121.7 78 73.1
Phvul.003G223748 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 3.1e-26 121.7 79 68.4
Thecc.03G244800 Theobroma cacao HOM05D003706 ORTHO05D004487 3.1e-26 121.7 79 67.1
Cpa.g.sc89.37 Carica papaya HOM05D003706 ORTHO05D004487 4.0e-26 121.3 71 74.6
Gohir.D12G216800 Gossypium hirsutum HOM05D003706 ORTHO05D004487 4.0e-26 121.3 79 67.1
Gorai.008G232400 Gossypium raimondii HOM05D003706 ORTHO05D004487 4.0e-26 121.3 79 67.1
Cc08_g11880 Coffea canephora HOM05D003706 ORTHO05D004487 5.3e-26 120.9 74 74.3
Gohir.A12G214200 Gossypium hirsutum HOM05D003706 ORTHO05D004487 5.3e-26 120.9 79 67.1
PSO782G4370 Papaver somniferum HOM05D003706 ORTHO05D004487 5.3e-26 120.9 75 74.7
Psat4g074200 Pisum sativum HOM05D003706 ORTHO05D004487 5.3e-26 120.9 79 72.2
Sabra03G0052000 Salix brachista HOM05D003706 ORTHO05D004487 5.3e-26 120.9 69 81.2
BraA01t00901Z Brassica rapa HOM05D003706 ORTHO05D004487 6.9e-26 120.6 74 71.6
Lj4g0012322 Lotus japonicus HOM05D003706 ORTHO05D004487 9.0e-26 120.2 78 71.8
PSO063G5263 Papaver somniferum HOM05D003706 ORTHO05D004487 9.0e-26 120.2 75 73.3
Prupe.5G061500 Prunus persica HOM05D003706 ORTHO05D004487 9.0e-26 120.2 74 75.7
arahy.Tifrunner.gnm1.ann1.P7CRZW Arachis hypogaea HOM05D003706 ORTHO05D004487 1.5e-25 119.4 74 71.6
Aqoxy3G02726 Aquilegia oxysepala HOM05D003706 ORTHO05D004487 2.0e-25 119.0 73 69.9
ECA240G2285 Erigeron canadensis HOM05D003706 ORTHO05D004487 2.6e-25 118.6 73 74.0
RcHm_v2.0_Chr7g0204661 Rosa chinensis HOM05D003706 ORTHO05D004487 2.6e-25 118.6 74 74.3
Sp7g16650 Schrenkiella parvula HOM05D003706 ORTHO05D004487 2.6e-25 118.6 74 73.0
FAN04G0187 Fragaria x ananassa HOM05D003706 ORTHO05D004487 5.8e-25 117.5 74 73.0
FAN08G3606 Fragaria x ananassa HOM05D003706 ORTHO05D004487 5.8e-25 117.5 74 73.0
MD04G1057500 Malus domestica HOM05D003706 ORTHO05D004487 5.8e-25 117.5 74 71.6
Ca_21985_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 7.6e-25 117.1 78 69.2
Ca_21998_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 7.6e-25 117.1 78 69.2
FAN13G2930 Fragaria x ananassa HOM05D003706 ORTHO05D004487 7.6e-25 117.1 74 73.0
Peaxi162Scf00260g00418 Petunia axillaris HOM05D003706 ORTHO05D004487 7.6e-25 117.1 61 86.9
MD06G1051100 Malus domestica HOM05D003706 ORTHO05D004487 9.9e-25 116.7 77 68.8
FvH4_5g19870 Fragaria vesca HOM05D003706 ORTHO05D004487 2.2e-24 115.5 74 71.6
FAN18G2986 Fragaria x ananassa HOM05D003706 ORTHO05D004487 2.2e-24 115.5 74 71.6
Medtr4g100360 Medicago truncatula HOM05D003706 ORTHO05D004487 3.8e-24 114.8 74 70.3
TPR.G10445 Trifolium pratense HOM05D003706 ORTHO05D004487 3.8e-24 114.8 73 71.2
Haze_07960 Corylus avellana HOM05D003706 ORTHO05D004487 4.9e-24 114.4 93 63.4
TWI15G0745 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 4.9e-24 114.4 70 74.3
MBI04_g41760_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 8.4e-24 113.6 71 67.6
Ah.07g198590 Amaranthus hybridus HOM05D003706 ORTHO05D004487 1.1e-23 113.2 78 66.7
CDE11G0530 Ceratophyllum demersum HOM05D003706 ORTHO05D004487 1.1e-23 113.2 72 68.1
unitig_0.g1053 Utricularia gibba HOM05D003706 ORTHO05D004487 7.1e-23 110.5 73 69.9
VMungo1215G2603 Vigna mungo HOM05D003706 ORTHO05D004487 1.2e-22 109.8 70 71.4
Lj2C226G3 Lonicera japonica HOM05D003706 ORTHO05D004487 1.6e-22 109.4 66 75.8
SGA_v2.0_scaffold199G41234 Striga asiatica HOM05D003706 ORTHO05D004487 1.6e-22 109.4 59 83.1
Duzib084G0672 Durio zibethinus HOM05D003706 ORTHO05D004487 2.1e-22 109.0 66 71.2
Lalb_Chr00c54g0413631 Lupinus albus HOM05D003706 ORTHO05D004487 4.6e-22 107.8 119 48.7
VMungo0251G2656 Vigna mungo HOM05D003706 ORTHO05D004487 4.6e-22 107.8 79 63.3
arahy.Tifrunner.gnm1.ann1.FUBR3I Arachis hypogaea HOM05D003706 ORTHO05D004487 3.9e-21 104.8 66 69.7
HPP92_002099 Vanilla planifolia HOM05D003706 ORTHO05D004487 5.1e-21 104.4 69 69.6
arahy.Tifrunner.gnm1.ann1.77EYCF Arachis hypogaea HOM05D003706 ORTHO05D004487 1.1e-20 103.2 59 76.3
BcaC06g33564 Brassica carinata HOM05D003706 ORTHO05D004487 1.1e-20 103.2 91 59.3
HPP92_014688 Vanilla planifolia HOM05D003706 ORTHO05D004487 3.3e-20 101.7 69 66.7
Sc22g0001060 Simmondsia chinensis HOM05D003706 ORTHO05D004487 1.6e-19 99.4 64 73.4
Zm00001eb186330 Zea mays HOM05D003706 ORTHO05D004487 2.1e-19 99.0 63 68.3
CiPaw.12G048600 Carya illinoinensis HOM05D003706 ORTHO05D004487 4.8e-19 97.8 61 75.4
Os02g0654500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 4.8e-19 97.8 60 71.7
Pp3c3_8410 Physcomitrium patens HOM05D003706 ORTHO05D004487 1.4e-18 96.3 84 56.0
Lalb_Chr00c24g0407441 Lupinus albus HOM05D003706 ORTHO05D004487 1.8e-18 95.9 58 74.1
Mapoly0021s0071 Marchantia polymorpha HOM05D003706 ORTHO05D004487 3.1e-18 95.1 80 62.5
Zm00001eb249260 Zea mays HOM05D003706 ORTHO05D004487 4.0e-18 94.7 74 56.8
AagrBONN_evm.TU.Sc2ySwM_368.2205 Anthoceros agrestis HOM05D003706 ORTHO05D004487 6.9e-18 94.0 73 58.9
Zm00001eb427920 Zea mays HOM05D003706 ORTHO05D004487 9.0e-18 93.6 76 61.8
SMO364G0877 Selaginella moellendorffii HOM05D003706 ORTHO05D004487 2.6e-17 92.0 73 57.5
Rhsim02G0172600 Rhododendron simsii HOM05D003480 ORTHO05D004487 5.8e-17 90.9 59 67.8
CsaV3_3G002450 Cucumis sativus L. HOM05D003706 ORTHO05D004487 1.0e-16 90.1 58 70.7
VMungo0251G2614 Vigna mungo HOM05D003706 ORTHO05D006202 1.3e-16 89.7 63 63.5
ATR0057G038 Amborella trichopoda HOM05D003706 ORTHO05D004487 6.5e-16 87.4 63 63.5
TPR.G4685 Trifolium pratense HOM05D003706 ORTHO05D004487 1.1e-15 86.7 59 67.8
Nn1g00853 Nelumbo nucifera HOM05D003706 ORTHO05D004487 4.2e-15 84.7 61 65.6
Zm00001eb433120 Zea mays HOM05D003706 ORTHO05D004487 4.2e-15 84.7 78 48.7
Cre03.g194250 Chlamydomonas reinhardtii HOM05D003706 ORTHO05D004487 7.1e-15 84.0 70 51.4
CBR_g30854 Chara braunii HOM05D003706 ORTHO05D004487 9.3e-15 83.6 71 53.5
Os04g0667500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 8.7e-13 77.0 59 55.9
SHI07667 Sapria himalayana HOM05D003706 ORTHO05D004487 2.5e-12 75.5 55 60.0
MBI04_g33725_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 9.7e-12 73.6 41 70.7
MCO01G147 Micromonas commoda HOM05D003706 ORTHO05D004487 2.8e-11 72.0 69 46.4
RcHm_v2.0_Chr7g0214021 Rosa chinensis HOM05D003706 ORTHO05D004487 4.8e-11 71.2 58 62.1
TAR375G0973 Trochodendron aralioides HOM05D003706 ORTHO05D004487 2.4e-10 68.9 44 72.7
PRCOL_00002923 Prasinoderma coloniale HOM05D003706 ORTHO05D004487 2.0e-09 65.9 71 40.8
Os04g0546400 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 2.7e-06 55.5 51 52.9


User provided reference genes

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