Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 0.0e+00 3435.2 1742 100.0
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 0.0e+00 3407.8 1742 99.2
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 0.0e+00 3079.3 1743 90.5
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 0.0e+00 2796.1 1808 80.5
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 0.0e+00 1986.8 1773 59.4
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 0.0e+00 1978.8 1301 79.2
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 0.0e+00 1935.2 1754 57.6
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 0.0e+00 1926.4 1778 57.4
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 0.0e+00 1921.4 1762 58.5
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 0.0e+00 1904.0 1759 57.3
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1894.0 1755 57.2
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 0.0e+00 1888.2 1754 57.3
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 0.0e+00 1878.2 1651 59.6
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 0.0e+00 1877.1 1964 52.7
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 0.0e+00 1867.0 1763 56.0
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 0.0e+00 1866.7 1778 56.0
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 0.0e+00 1862.0 1767 56.6
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 0.0e+00 1860.1 1755 55.8
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 0.0e+00 1859.3 1757 56.9
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 0.0e+00 1819.3 1754 55.4
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 0.0e+00 1817.4 1754 55.1
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 0.0e+00 1803.9 1767 55.6
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 0.0e+00 1803.5 1757 54.8
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 0.0e+00 1790.0 1754 54.0
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 0.0e+00 1782.7 1791 54.6
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 0.0e+00 1769.6 1762 56.1
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1768.4 1763 53.9
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 0.0e+00 1762.3 1761 54.5
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 0.0e+00 1758.0 1750 53.6
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1756.9 1766 54.5
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 0.0e+00 1749.9 1748 53.4
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1746.9 1766 54.4
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 0.0e+00 1739.5 1762 53.6
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 0.0e+00 1738.0 1607 57.6
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1738.0 1755 53.3
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 0.0e+00 1736.5 1758 53.6
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 0.0e+00 1731.1 1753 53.2
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 0.0e+00 1730.7 1745 53.3
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1719.9 1756 53.6
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 0.0e+00 1704.9 1519 59.8
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 0.0e+00 1701.4 1752 52.7
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 0.0e+00 1698.3 1754 52.8
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1695.2 1756 53.0
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 0.0e+00 1693.3 1765 52.0
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 0.0e+00 1693.3 1761 51.9
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 0.0e+00 1689.1 1769 52.4
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 0.0e+00 1684.1 1755 52.1
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 0.0e+00 1682.9 1653 54.9
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1681.8 1751 53.2
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 0.0e+00 1681.0 1761 51.8
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 0.0e+00 1672.9 1768 51.3
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 0.0e+00 1672.5 1759 51.4
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 0.0e+00 1670.6 1764 51.5
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1660.2 1762 51.5
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1658.3 1762 51.2
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1657.9 1763 51.0
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1656.0 1561 57.3
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 0.0e+00 1643.6 1785 50.4
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 0.0e+00 1642.1 1762 51.0
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 0.0e+00 1623.6 1762 51.4
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 0.0e+00 1623.2 1763 50.7
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1622.8 1754 50.9
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 1615.5 1800 50.1
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1611.7 1752 50.3
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 0.0e+00 1595.1 1781 51.4
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1590.9 1756 50.8
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1584.3 1763 49.4
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1572.0 1773 48.9
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 0.0e+00 1570.1 1760 49.5
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 0.0e+00 1548.5 1758 49.4
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 0.0e+00 1520.0 1791 48.2
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1511.5 1450 55.4
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 0.0e+00 1449.5 1562 51.3
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 0.0e+00 1421.8 1765 45.9
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 0.0e+00 1351.3 1139 62.4
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 0.0e+00 1239.6 1346 49.6
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 0.0e+00 1202.6 1333 49.0
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 0.0e+00 1125.5 1385 46.4
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 0.0e+00 1121.7 1072 56.7
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 0.0e+00 1109.4 991 60.1
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 0.0e+00 1079.3 1363 46.7
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 7.1e-307 1058.1 1743 38.8
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 2.4e-302 1043.1 1829 36.6
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 5.0e-300 1035.4 1009 57.0
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 1.9e-296 1023.5 1487 42.6
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.5e-288 997.3 954 55.7
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 6.7e-281 971.8 794 64.5
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 1.4e-254 884.4 806 58.9
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 1.9e-222 777.7 919 48.3
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 1.8e-201 708.0 752 53.6
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 5.8e-192 676.4 516 68.2
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.9e-190 671.4 411 86.6
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.2e-162 578.2 340 89.4
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 4.2e-158 563.9 502 60.6
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 8.5e-151 539.7 1419 29.5
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 5.2e-140 503.8 406 63.1
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 5.7e-139 500.4 408 62.5
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 6.6e-135 486.9 634 44.2
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 4.6e-128 464.2 431 59.9
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 1.5e-126 459.1 400 60.0
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 1.2e-125 456.1 624 41.8
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 1.8e-124 452.2 478 52.7
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.1e-120 438.7 433 60.0
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 4.9e-114 417.5 310 69.0
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 6.8e-108 397.1 480 45.4
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 5.4e-105 387.5 553 40.3
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 1.3e-93 349.7 366 51.9
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 1.6e-93 349.4 284 63.4
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 1.1e-89 336.7 309 59.9
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 2.6e-83 315.5 388 45.9
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 3.9e-79 301.6 348 49.4
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.9e-78 299.3 502 34.7
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 1.1e-73 283.5 388 41.5
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 7.1e-73 280.8 178 77.5
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 1.2e-72 280.0 551 33.4
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.3e-71 275.8 375 42.9
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 8.7e-71 273.9 179 76.5
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 3.7e-69 268.5 218 63.3
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 9.0e-68 263.8 254 53.9
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 9.1e-60 237.3 396 37.6
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 3.4e-59 235.3 178 63.5
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 1.4e-57 229.9 396 36.6
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 7.2e-57 227.6 777 26.4
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 7.9e-56 224.2 137 77.4
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 8.5e-50 204.1 906 25.5
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 1.6e-48 199.9 285 40.7
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 3.6e-48 198.7 137 69.3
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 2.3e-47 196.1 652 26.1
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 1.5e-46 193.4 402 35.1
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 1.3e-45 190.3 106 86.8
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 1.7e-45 189.9 112 84.8
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 8.2e-45 187.6 186 54.8
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 7.7e-35 154.5 138 57.2
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.1e-33 150.6 152 55.9
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 2.3e-31 142.9 225 36.4
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 3.4e-30 139.0 151 42.4
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 7.5e-30 137.9 207 36.7
Os10g0142900 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 1.3e-29 137.1 179 44.1
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 1.1e-28 134.0 172 44.8
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 1.2e-27 130.6 85 74.1
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 1.2e-27 130.6 85 75.3
Cpa.g.sc98.30 Carica papaya HOM05D003893 ORTHO05D005167 1.3e-26 127.1 136 51.5
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.7e-26 126.7 130 53.1
Gohir.D02G139050 Gossypium hirsutum HOM05D003893 ORTHO05D005167 3.3e-25 122.5 82 70.7
Gorai.005G158100 Gossypium raimondii HOM05D003893 ORTHO05D005167 9.5e-25 120.9 82 70.7
Gohir.D11G202680 Gossypium hirsutum HOM05D003893 ORTHO05D005167 8.0e-24 117.9 78 70.5
CAN.G466.3 Capsicum annuum HOM05D003893 ORTHO05D005167 5.7e-22 111.7 63 82.5
arahy.Tifrunner.gnm1.ann1.9S00H1 Arachis hypogaea HOM05D003893 ORTHO05D005167 9.8e-22 110.9 74 71.6
ATR0665G236 Amborella trichopoda HOM05D003893 ORTHO05D005167 2.9e-21 109.4 157 41.4
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 2.4e-20 106.3 53 96.2
Gohir.A11G196650 Gossypium hirsutum HOM05D003893 ORTHO05D005167 2.4e-20 106.3 83 62.7
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 4.7e-16 92.0 132 43.2
arahy.Tifrunner.gnm1.ann1.T8TVPL Arachis hypogaea HOM05D000826 ORTHO05D006448 2.3e-15 89.7 70 64.3
Gorai.002G189000 Gossypium raimondii HOM05D003893 ORTHO05D047700 3.4e-14 85.9 63 63.5
arahy.Tifrunner.gnm1.ann1.QNR9EZ Arachis hypogaea HOM05D000826 ORTHO05D006448 4.4e-14 85.5 70 62.9
arahy.Tifrunner.gnm1.ann1.UB4SVV Arachis hypogaea HOM05D003893 ORTHO05D005167 3.7e-13 82.4 64 64.1
arahy.Tifrunner.gnm1.ann1.BV66IC Arachis hypogaea HOM05D000826 ORTHO05D006448 2.4e-12 79.7 49 75.5
arahy.Tifrunner.gnm1.ann1.T26UD0 Arachis hypogaea HOM05D000826 ORTHO05D006448 2.4e-12 79.7 49 75.5
arahy.Tifrunner.gnm1.ann1.V6RYFZ Arachis hypogaea HOM05D000826 ORTHO05D006448 2.4e-12 79.7 49 75.5
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 3.2e-12 79.3 156 34.6
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 9.2e-12 77.8 189 30.2
arahy.Tifrunner.gnm1.ann1.AZ80GT Arachis hypogaea HOM05D000826 ORTHO05D006448 3.5e-11 75.9 48 72.9
Gohir.D01G152650 Gossypium hirsutum HOM05D003893 ORTHO05D047700 4.6e-11 75.5 63 57.1
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 1.1e-09 70.9 147 30.6
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 4.3e-09 68.9 178 32.6
BolC4t23418H Brassica oleracea HOM05D003893 ORTHO05D021800 4.7e-08 65.5 185 28.6
BolC5t31436H Brassica oleracea HOM05D003893 ORTHO05D021800 6.2e-08 65.1 184 29.3
SEGI_26572 Sequoiadendron giganteum HOM05D003893 ORTHO05D011582 5.2e-07 62.0 144 35.4
BolC6t38634H Brassica oleracea HOM05D003893 ORTHO05D021800 6.8e-07 61.6 197 28.4
BcaC05g26842 Brassica carinata HOM05D003893 ORTHO05D021800 1.5e-06 60.5 64 45.3
CSS0024237 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 2.0e-06 60.1 123 34.1


User provided reference genes

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