Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 5.9e-132 474.2 234 100.0
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 2.9e-131 471.9 234 99.6
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.3e-110 403.3 234 85.9
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.0e-108 396.0 234 85.0
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.5e-106 389.8 235 85.1
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.2e-105 386.7 239 83.3
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 9.6e-90 334.0 200 83.5
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 1.2e-84 317.0 157 100.0
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 5.5e-69 265.0 159 84.3
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 8.4e-62 241.1 173 67.1
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 3.0e-59 232.6 179 67.6
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.5e-58 229.6 172 68.6
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.3e-58 228.8 208 59.6
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 7.4e-58 228.0 172 68.0
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 7.4e-58 228.0 172 68.0
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.3e-57 227.3 172 68.0
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 2.4e-56 223.0 219 57.5
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 2.2e-54 216.5 172 63.4
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 5.0e-54 215.3 170 60.6
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 6.5e-54 214.9 173 63.6
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 7.2e-53 211.5 173 62.4
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 4.6e-52 208.8 175 62.3
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 6.1e-52 208.4 162 64.8
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 7.9e-52 208.0 214 53.7
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 7.9e-52 208.0 154 66.2
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 3.9e-51 205.7 169 61.5
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 5.1e-51 205.3 171 60.8
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 5.1e-51 205.3 184 57.6
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 5.1e-51 205.3 184 57.6
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 8.7e-51 204.5 152 67.8
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 1.1e-50 204.1 216 53.2
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 4.3e-50 202.2 169 62.1
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 5.7e-50 201.8 167 63.5
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 9.7e-50 201.1 151 66.2
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 1.3e-49 200.7 172 60.5
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 1.6e-49 200.3 163 63.8
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 1.6e-49 200.3 192 55.2
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 1.4e-48 197.2 223 48.9
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 1.4e-48 197.2 147 68.7
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 1.8e-48 196.8 156 64.1
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 1.8e-48 196.8 160 64.4
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 4.1e-48 195.7 167 61.7
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 4.1e-48 195.7 169 58.6
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 6.9e-48 194.9 156 64.7
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 1.2e-47 194.1 170 57.6
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 1.2e-47 194.1 177 55.4
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 2.0e-47 193.4 190 54.2
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 2.6e-47 193.0 180 56.1
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 3.4e-47 192.6 211 51.7
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 3.4e-47 192.6 167 65.3
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 1.0e-46 191.0 249 47.4
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 1.3e-46 190.7 158 60.8
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 2.2e-46 189.9 238 47.1
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 3.8e-46 189.1 212 51.4
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 3.8e-46 189.1 168 56.0
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 1.9e-45 186.8 160 60.6
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 1.9e-45 186.8 126 74.6
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 1.9e-45 186.8 161 62.1
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 3.2e-45 186.0 177 52.5
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 4.2e-45 185.7 158 67.1
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 5.5e-45 185.3 175 56.6
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 7.2e-45 184.9 126 73.8
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 9.4e-45 184.5 170 55.9
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 1.6e-44 183.7 160 64.4
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 3.6e-44 182.6 178 56.2
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 6.1e-44 181.8 186 54.8
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 6.1e-44 181.8 186 54.8
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 1.0e-43 181.0 153 62.7
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.4e-43 180.6 185 55.7
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 2.3e-43 179.9 146 63.7
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 3.9e-43 179.1 198 53.0
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 3.9e-43 179.1 239 46.9
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 6.7e-43 178.3 181 52.5
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.5e-42 177.2 215 47.4
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 2.6e-42 176.4 161 57.8
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 3.3e-42 176.0 178 57.3
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 5.7e-42 175.3 164 55.5
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 7.4e-42 174.9 193 50.3
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 7.4e-42 174.9 193 50.3
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 7.4e-42 174.9 193 50.3
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 9.7e-42 174.5 164 58.5
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 9.7e-42 174.5 179 53.6
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 1.3e-41 174.1 194 49.5
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 1.3e-41 174.1 160 56.2
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 1.3e-41 174.1 160 56.9
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 1.3e-41 174.1 160 56.9
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 1.7e-41 173.7 160 56.2
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 2.2e-41 173.3 162 59.3
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 2.8e-41 172.9 164 59.8
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 2.8e-41 172.9 161 57.8
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 1.4e-40 170.6 161 57.1
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 1.2e-39 167.5 161 59.0
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 1.5e-39 167.2 157 55.4
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.5e-39 167.2 157 57.3
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 1.5e-39 167.2 237 44.3
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 2.9e-38 162.9 174 55.7
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 5.0e-38 162.2 121 66.9
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 8.5e-38 161.4 227 44.1
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 9.4e-37 157.9 150 56.0
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 2.6e-34 149.8 110 70.0
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 7.4e-34 148.3 164 48.8
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 7.4e-34 148.3 164 48.8
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 2.8e-33 146.4 165 48.5
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 2.6e-31 139.8 162 51.2
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 2.6e-31 139.8 161 46.6
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 4.5e-31 139.0 123 62.6
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 1.3e-30 137.5 123 59.3
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 2.2e-30 136.7 89 76.4
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 7.2e-29 131.7 121 56.2
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 9.7e-26 121.3 94 67.0
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 1.7e-25 120.6 102 59.8
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 1.1e-24 117.9 104 59.6
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 5.9e-23 112.1 115 57.4
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 7.7e-23 111.7 77 63.6
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 1.7e-22 110.5 93 61.3
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 3.8e-22 109.4 157 45.2
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.9e-21 107.1 91 56.0
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 3.8e-14 82.8 104 47.1
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 5.0e-14 82.4 95 48.4
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 7.2e-13 78.6 68 54.4
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 4.4e-10 69.3 46 63.0
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 7.5e-10 68.6 120 35.0
CAN.G900.14 Capsicum annuum HOM05D006505 ORTHO05D008086 2.2e-09 67.0 59 59.3
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 1.1e-08 64.7 119 34.5
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 1.4e-08 64.3 98 41.8
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 2.4e-08 63.5 63 49.2
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 4.1e-08 62.8 85 40.0
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 5.4e-08 62.4 85 40.0
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 7.0e-08 62.0 57 50.9
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 1.3e-06 57.8 121 36.4


User provided reference genes

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