Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 6.7e-131 470.7 238 100.0
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 9.3e-125 450.3 238 95.4
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 2.4e-104 382.5 242 81.4
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.2e-100 370.2 242 77.7
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 6.1e-100 367.9 242 76.9
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 1.8e-99 366.3 241 78.8
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.9e-94 349.0 243 74.9
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 5.0e-86 321.6 210 81.4
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 8.5e-86 320.9 210 81.0
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 9.4e-85 317.4 154 100.0
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 1.5e-77 293.5 238 61.3
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 7.2e-77 291.2 242 59.9
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 4.7e-76 288.5 241 61.4
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 1.4e-75 287.0 241 60.6
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 7.5e-74 281.2 241 58.9
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 1.7e-73 280.0 241 59.8
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 6.3e-73 278.1 237 57.8
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 3.5e-71 272.3 237 57.8
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 5.9e-71 271.6 226 62.8
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 7.7e-71 271.2 237 57.4
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.0e-70 270.8 236 55.9
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 6.6e-70 268.1 243 58.0
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 1.9e-69 266.5 241 57.7
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 4.2e-69 265.4 236 55.9
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 9.5e-69 264.2 239 55.2
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 3.0e-67 259.2 230 54.8
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.2e-66 257.3 230 55.2
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 3.4e-66 255.8 228 54.8
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 1.3e-65 253.8 239 52.7
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 2.8e-65 252.7 234 54.7
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.1e-64 250.8 238 52.9
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 1.4e-64 250.4 234 53.8
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.8e-64 250.0 238 51.3
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 4.1e-64 248.8 238 51.7
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 2.7e-63 246.1 228 52.6
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 1.3e-62 243.8 238 50.8
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.3e-62 243.8 234 53.4
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 1.7e-62 243.4 236 51.3
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.3e-62 243.0 240 52.9
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.9e-62 242.7 240 51.2
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 8.6e-62 241.1 236 51.7
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 1.1e-61 240.7 224 50.4
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 1.9e-61 240.0 228 52.2
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 1.9e-61 240.0 238 49.6
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 5.6e-61 238.4 238 50.4
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 5.6e-61 238.4 201 58.2
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 7.3e-61 238.0 230 51.3
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 7.3e-61 238.0 239 49.8
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.6e-60 236.9 238 51.3
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 2.1e-60 236.5 196 56.6
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 3.6e-60 235.7 238 50.4
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 6.1e-60 235.0 228 49.1
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 6.1e-60 235.0 227 51.1
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 6.1e-60 235.0 237 51.1
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 8.0e-60 234.6 227 51.5
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 1.0e-59 234.2 239 49.0
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 1.4e-59 233.8 227 50.7
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 3.1e-59 232.6 227 49.8
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 3.1e-59 232.6 238 52.9
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 4.0e-59 232.3 239 49.8
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 4.0e-59 232.3 227 50.7
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 5.2e-59 231.9 242 47.1
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 6.8e-59 231.5 228 49.6
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 6.8e-59 231.5 237 48.5
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 8.9e-59 231.1 239 50.6
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 1.5e-58 230.3 239 49.4
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.0e-58 229.9 226 47.8
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 1.7e-57 226.9 240 49.2
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 3.7e-57 225.7 228 50.9
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 8.3e-57 224.6 231 50.6
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.4e-56 223.8 238 47.1
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.4e-56 223.8 230 48.3
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 2.4e-56 223.0 242 46.7
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 4.1e-56 222.2 197 54.3
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 5.4e-56 221.9 243 46.1
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 5.4e-56 221.9 243 46.1
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 9.2e-56 221.1 243 46.5
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.2e-55 220.7 229 45.9
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 6.0e-55 218.4 237 46.0
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 1.0e-54 217.6 236 44.1
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 8.6e-54 214.5 236 45.8
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.5e-53 213.8 235 45.1
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.5e-53 213.8 235 45.1
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.9e-53 213.4 235 45.1
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 1.9e-53 213.4 229 47.2
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 2.5e-53 213.0 235 45.1
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.6e-53 211.8 235 44.7
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 7.3e-53 211.5 234 46.2
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.2e-52 210.7 226 45.1
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 3.6e-52 209.1 230 45.7
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 8.0e-52 208.0 227 45.8
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 4.0e-51 205.7 236 43.6
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 5.8e-50 201.8 233 44.6
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 9.8e-50 201.1 237 44.7
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 1.3e-49 200.7 244 42.6
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 1.1e-48 197.6 230 44.8
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 4.1e-48 195.7 234 44.0
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 1.6e-47 193.7 235 42.6
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 2.7e-47 193.0 231 42.9
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 2.7e-47 193.0 231 42.9
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 4.6e-47 192.2 240 45.8
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 4.6e-47 192.2 224 44.6
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 6.0e-47 191.8 148 65.5
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 7.8e-47 191.4 214 47.2
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 7.8e-47 191.4 215 46.5
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 1.7e-46 190.3 235 42.1
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 3.0e-46 189.5 236 41.1
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 3.9e-46 189.1 235 42.6
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 3.9e-46 189.1 231 42.0
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 5.1e-46 188.7 237 46.0
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 1.5e-45 187.2 230 40.9
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.5e-45 187.2 165 55.8
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 1.9e-45 186.8 230 40.9
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 1.9e-45 186.8 230 40.9
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 1.9e-45 186.8 235 41.7
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 2.5e-45 186.4 180 50.0
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 5.6e-45 185.3 229 43.2
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 9.5e-45 184.5 211 46.4
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 1.2e-44 184.1 230 43.0
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 2.1e-44 183.3 169 56.2
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.6e-44 182.6 152 59.2
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 6.2e-44 181.8 231 43.7
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 8.1e-44 181.4 152 56.6
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 8.1e-44 181.4 230 41.7
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.1e-43 181.0 229 40.2
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 1.4e-43 180.6 217 38.7
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 2.3e-43 179.9 230 41.7
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 3.1e-43 179.5 213 38.5
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 8.9e-43 177.9 144 60.4
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 1.2e-42 177.6 228 39.5
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 7.5e-42 174.9 230 41.3
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 9.9e-42 174.5 192 44.8
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 6.4e-41 171.8 224 43.8
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 2.4e-40 169.9 232 40.5
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 3.2e-40 169.5 237 38.8
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 1.2e-39 167.5 226 43.8
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 1.2e-39 167.5 225 43.6
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.5e-39 166.0 237 41.8
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 4.6e-39 165.6 224 42.9
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 1.0e-38 164.5 215 40.0
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 1.7e-38 163.7 175 44.0
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 2.3e-38 163.3 219 40.6
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 5.1e-38 162.2 222 39.2
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.1e-37 161.0 192 42.7
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 2.5e-37 159.8 230 42.2
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 2.5e-37 159.8 230 42.2
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 2.5e-37 159.8 230 40.9
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 2.5e-37 159.8 151 49.7
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 1.2e-36 157.5 224 36.2
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 4.0e-35 152.5 229 40.6
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 1.2e-34 151.0 215 35.8
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 3.8e-33 146.0 194 36.6
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 3.2e-32 142.9 234 35.0
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 3.9e-30 136.0 217 35.9
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 4.3e-29 132.5 143 48.3
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 7.3e-29 131.7 216 36.6
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 8.1e-28 128.3 110 57.3
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 5.3e-27 125.6 98 64.3
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 1.2e-26 124.4 138 44.2
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 3.5e-23 112.8 77 67.5
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.3e-22 110.9 185 36.8
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 1.7e-22 110.5 111 49.5
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 9.6e-21 104.8 160 36.9
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.3e-20 104.4 122 45.9
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 2.1e-20 103.6 101 65.3
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.6e-20 102.8 145 40.0
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 8.1e-20 101.7 134 42.5
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.0e-18 97.1 92 46.7
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 9.9e-18 94.7 111 42.3
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.7e-17 94.0 214 31.3
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 1.6e-15 87.4 78 55.1
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 2.7e-15 86.7 74 50.0
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.0e-14 83.2 76 61.8
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 6.7e-14 82.0 96 44.8
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 2.5e-13 80.1 76 46.1
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 2.4e-11 73.6 58 56.9
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 5.3e-11 72.4 101 36.6
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 6.9e-11 72.0 99 37.4
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 2.2e-09 67.0 62 46.8
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 2.2e-09 67.0 94 35.1
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.9e-06 56.2 66 43.9


User provided reference genes

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