Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g017110 Solanum pennellii HOM05D003317 ORTHO05D003696 3.2e-84 315.1 161 100.0
Solyc08g061650.4 Solanum lycopersicum HOM05D003317 ORTHO05D003696 4.0e-63 245.0 131 96.9
Nitab4.5_0000446g0150 Nicotiana tabacum HOM05D003317 ORTHO05D003696 9.0e-47 190.7 118 83.1
Nitab4.5_0008422g0030 Nicotiana tabacum HOM05D003317 ORTHO05D003696 1.3e-42 176.8 110 80.0
Lj7A221G28 Lonicera japonica HOM05D003317 ORTHO05D003696 6.0e-35 151.4 127 62.2
Migut.A00075 Erythranthe guttata HOM05D003317 ORTHO05D003696 7.9e-35 151.0 127 62.2
Dinv41844 Davidia involucrata HOM05D003317 ORTHO05D003696 1.8e-34 149.8 133 60.9
DCAR_004378 Daucus carota HOM05D003317 ORTHO05D003696 3.9e-34 148.7 127 59.1
Duzib168G1355 Durio zibethinus HOM05D003317 ORTHO05D003696 3.3e-33 145.6 108 71.3
CSS0017754 Camellia sinensis var. sinensis HOM05D003317 ORTHO05D003696 4.3e-33 145.2 126 59.5
Cc08_g01130 Coffea canephora HOM05D003317 ORTHO05D003696 7.4e-33 144.4 125 61.6
DCAR_001231 Daucus carota HOM05D003317 ORTHO05D003696 1.3e-32 143.7 123 61.0
MSTRG.25987 Avicennia marina HOM05D003317 ORTHO05D003696 1.6e-32 143.3 127 60.6
Manes.03G053200 Manihot esculenta HOM05D003317 ORTHO05D003696 2.2e-32 142.9 128 57.8
Gohir.A07G019500 Gossypium hirsutum HOM05D003317 ORTHO05D003696 2.8e-32 142.5 127 59.1
Oeu018029.1 Olea europaea HOM05D003317 ORTHO05D003696 6.3e-32 141.4 127 57.5
TAR624G0435 Trochodendron aralioides HOM05D003317 ORTHO05D003696 8.2e-32 141.0 108 67.6
COL.COLO4_21141 Corchorus olitorius HOM05D003317 ORTHO05D003696 1.1e-31 140.6 108 67.6
TAR626G1452 Trochodendron aralioides HOM05D003317 ORTHO05D003696 1.1e-31 140.6 127 61.4
TAR626G1699 Trochodendron aralioides HOM05D003317 ORTHO05D003696 1.1e-31 140.6 127 61.4
SalBow4G1263 Salvia bowleyana HOM05D003317 ORTHO05D003696 1.4e-31 140.2 121 61.2
Thecc.09G063600 Theobroma cacao HOM05D003317 ORTHO05D003696 1.4e-31 140.2 127 59.1
Ciclev10007604m.g Citrus clementina HOM05D003317 ORTHO05D003696 4.1e-31 138.7 110 64.5
Rhsim01G0183000 Rhododendron simsii HOM05D003317 ORTHO05D003696 4.1e-31 138.7 125 60.0
Gorai.001G020000 Gossypium raimondii HOM05D003317 ORTHO05D003696 1.2e-30 137.1 127 58.3
FAN28G0340 Fragaria x ananassa HOM05D003317 ORTHO05D003696 1.5e-30 136.7 121 58.7
Gohir.D07G019300 Gossypium hirsutum HOM05D003317 ORTHO05D003696 1.5e-30 136.7 127 59.1
Potri.006G142200 Populus trichocarpa HOM05D003317 ORTHO05D003696 2.0e-30 136.3 127 58.3
CANSAT56G0327 Cannabis sativa HOM05D003317 ORTHO05D003696 2.6e-30 136.0 110 63.6
Dinv42387 Davidia involucrata HOM05D003317 ORTHO05D003696 2.6e-30 136.0 127 60.6
FvH4_1g08600 Fragaria vesca HOM05D003317 ORTHO05D003696 2.6e-30 136.0 103 66.0
FAN19G2419 Fragaria x ananassa HOM05D003317 ORTHO05D003696 2.6e-30 136.0 103 66.0
FAN23G1713 Fragaria x ananassa HOM05D003317 ORTHO05D003696 2.6e-30 136.0 103 66.0
Nn6g35618 Nelumbo nucifera HOM05D003317 ORTHO05D003696 2.6e-30 136.0 110 62.7
RcHm_v2.0_Chr2g0094821 Rosa chinensis HOM05D003317 ORTHO05D003696 3.4e-30 135.6 103 67.0
VMungo1215G0865 Vigna mungo HOM05D003317 ORTHO05D003696 4.5e-30 135.2 127 58.3
Potri.006G220600 Populus trichocarpa HOM05D003317 ORTHO05D003696 5.9e-30 134.8 127 55.1
Thecc.09G078000 Theobroma cacao HOM05D003317 ORTHO05D003696 5.9e-30 134.8 121 58.7
vmacro12621 Vaccinium macrocarpon HOM05D003317 ORTHO05D003696 5.9e-30 134.8 103 64.1
GSVIVG01015088001 Vitis vinifera HOM05D003317 ORTHO05D003696 5.9e-30 134.8 103 64.1
Sabra06G0111300 Salix brachista HOM05D003317 ORTHO05D003696 7.6e-30 134.4 110 60.9
Cfa002996 Carpinus fangiana HOM05D003317 ORTHO05D003696 1.0e-29 134.0 110 60.9
Haze_26007 Corylus avellana HOM05D003317 ORTHO05D003696 1.0e-29 134.0 110 60.9
Sabra06G0170300 Salix brachista HOM05D003317 ORTHO05D003696 1.3e-29 133.7 126 53.2
Gohir.A06G076100 Gossypium hirsutum HOM05D003317 ORTHO05D003696 1.7e-29 133.3 110 60.9
Oeu063419.1 Olea europaea HOM05D003317 ORTHO05D003696 1.7e-29 133.3 110 62.7
Sopen07g021250 Solanum pennellii HOM05D003317 ORTHO05D003696 1.7e-29 133.3 142 50.0
CAN.G498.3 Capsicum annuum HOM05D003317 ORTHO05D003696 2.2e-29 132.9 137 52.6
Manes.16G095800 Manihot esculenta HOM05D003317 ORTHO05D003696 2.2e-29 132.9 127 55.1
CAN.G63.8 Capsicum annuum HOM05D003317 ORTHO05D003696 2.9e-29 132.5 137 52.6
Nitab4.5_0000343g0140 Nicotiana tabacum HOM05D003317 ORTHO05D003696 2.9e-29 132.5 109 60.6
Nitab4.5_0002966g0040 Nicotiana tabacum HOM05D003317 ORTHO05D003696 2.9e-29 132.5 109 60.6
Phvul.003G131200 Phaseolus vulgaris HOM05D003317 ORTHO05D003696 2.9e-29 132.5 127 55.9
Atru.chr7.1699 Acer truncatum HOM05D003317 ORTHO05D003696 3.8e-29 132.1 110 60.0
Lj4g0026519 Lotus japonicus HOM05D003317 ORTHO05D003696 3.8e-29 132.1 127 57.5
PGR142G0733 Punica granatum HOM05D003317 ORTHO05D003696 3.8e-29 132.1 125 56.8
Actinidia29929 Actinidia chinensis HOM05D003317 ORTHO05D003696 5.0e-29 131.7 110 61.8
TWI34G1043 Tripterygium wilfordii HOM05D003317 ORTHO05D003696 5.0e-29 131.7 111 61.3
Ca_21319_v3 Cicer arietinum L. HOM05D003317 ORTHO05D003696 6.5e-29 131.3 109 60.6
PGSC0003DMG400013008 Solanum tuberosum HOM05D003317 ORTHO05D003696 6.5e-29 131.3 142 49.3
vmacro06338 Vaccinium macrocarpon HOM05D003317 ORTHO05D003696 6.5e-29 131.3 120 57.5
Gorai.010G087700 Gossypium raimondii HOM05D003317 ORTHO05D003696 8.5e-29 131.0 104 62.5
Prupe.7G199800 Prunus persica HOM05D003317 ORTHO05D003696 1.4e-28 130.2 103 62.1
Sed0002159 Sechium edule HOM05D003317 ORTHO05D003696 1.4e-28 130.2 108 61.1
THA.LOC104815331 Tarenaya hassleriana HOM05D003317 ORTHO05D003696 1.4e-28 130.2 111 59.5
TPR.G28585 Trifolium pratense HOM05D003317 ORTHO05D003696 1.4e-28 130.2 109 58.7
BcaB06g26884 Brassica carinata HOM05D003317 ORTHO05D003696 1.9e-28 129.8 111 60.4
Cpa.g.sc126.22 Carica papaya HOM05D003317 ORTHO05D003696 1.9e-28 129.8 120 56.7
Lalb_Chr23g0276391 Lupinus albus HOM05D003317 ORTHO05D003696 1.9e-28 129.8 109 59.6
Psat1g134160 Pisum sativum HOM05D003317 ORTHO05D003696 1.9e-28 129.8 109 58.7
Ciclev10010155m.g Citrus clementina HOM05D003317 ORTHO05D003696 3.2e-28 129.0 104 65.4
DCAR_028330 Daucus carota HOM05D003317 ORTHO05D003696 3.2e-28 129.0 110 57.3
Medtr4g125440 Medicago truncatula HOM05D003317 ORTHO05D003696 3.2e-28 129.0 103 62.1
Phvul.009G227500 Phaseolus vulgaris HOM05D003317 ORTHO05D003696 3.2e-28 129.0 109 57.8
CiPaw.03G207100 Carya illinoinensis HOM05D003317 ORTHO05D003696 4.2e-28 128.6 110 58.2
MD15G1216800 Malus domestica HOM05D003317 ORTHO05D003696 4.2e-28 128.6 104 63.5
Peaxi162Scf00127g00131 Petunia axillaris HOM05D003317 ORTHO05D003696 4.2e-28 128.6 109 58.7
Aqoxy7G03984 Aquilegia oxysepala HOM05D003317 ORTHO05D003696 5.5e-28 128.3 111 57.7
CsaV3_1G040990 Cucumis sativus L. HOM05D003317 ORTHO05D003696 5.5e-28 128.3 129 54.3
Medtr4g125410 Medicago truncatula HOM05D003317 ORTHO05D003696 5.5e-28 128.3 109 59.6
Lj6g0021845 Lotus japonicus HOM05D003317 ORTHO05D003696 7.2e-28 127.9 109 58.7
Lalb_Chr07g0181161 Lupinus albus HOM05D003317 ORTHO05D003696 7.2e-28 127.9 126 53.2
SHI33751 Sapria himalayana HOM05D003317 ORTHO05D003696 7.2e-28 127.9 104 57.7
Sp3g24620 Schrenkiella parvula HOM05D003317 ORTHO05D003696 9.3e-28 127.5 111 57.7
Hund08778 Selenicereus undatus HOM05D003317 ORTHO05D003696 9.3e-28 127.5 137 50.4
Glyma.17G049600 Glycine max HOM05D003317 ORTHO05D003696 1.2e-27 127.1 127 52.8
Gohir.D06G075100 Gossypium hirsutum HOM05D003317 ORTHO05D003696 1.2e-27 127.1 104 61.5
VMungo1309G0541 Vigna mungo HOM05D003317 ORTHO05D003696 1.2e-27 127.1 110 57.3
C07p09320 Brassica napus HOM05D003317 ORTHO05D003696 1.6e-27 126.7 111 59.5
SGA_v2.0_scaffold20G09159 Striga asiatica HOM05D003317 ORTHO05D003696 1.6e-27 126.7 127 55.1
TWI32G0197 Tripterygium wilfordii HOM05D003317 ORTHO05D003696 1.6e-27 126.7 100 64.0
Medtr2g041610 Medicago truncatula HOM05D003317 ORTHO05D003696 3.6e-27 125.6 109 56.9
BolC7t41350H Brassica oleracea HOM05D003317 ORTHO05D003696 4.6e-27 125.2 104 62.5
Carub.0003s2717 Capsella rubella HOM05D003317 ORTHO05D003696 4.6e-27 125.2 110 55.5
PSO210G7636 Papaver somniferum HOM05D003317 ORTHO05D003696 4.6e-27 125.2 129 56.6
Cc06_g12060 Coffea canephora HOM05D003317 ORTHO05D003696 6.1e-27 124.8 110 56.4
Ca_23417_v3 Cicer arietinum L. HOM05D003317 ORTHO05D003696 7.9e-27 124.4 106 57.5
ClCG03G015120 Citrullus lanatus HOM05D003317 ORTHO05D003696 1.0e-26 124.0 108 58.3
BcaC06g35953 Brassica carinata HOM05D003317 ORTHO05D003696 1.3e-26 123.6 111 58.6
Eucgr.C00817 Eucalyptus grandis HOM05D003317 ORTHO05D003696 1.3e-26 123.6 125 53.6
Cfa002995 Carpinus fangiana HOM05D003317 ORTHO05D003696 1.8e-26 123.2 110 53.6
Psat4g017760 Pisum sativum HOM05D003317 ORTHO05D003696 1.8e-26 123.2 102 61.8
QL11p000685 Quercus lobata HOM05D003317 ORTHO05D003696 1.8e-26 123.2 110 56.4
arahy.Tifrunner.gnm1.ann1.81HHLD Arachis hypogaea HOM05D003317 ORTHO05D003696 2.3e-26 122.9 101 63.4
Lj7A686T70 Lonicera japonica HOM05D003317 ORTHO05D003696 2.3e-26 122.9 143 49.0
Ah.09g231590 Amaranthus hybridus HOM05D003317 ORTHO05D003696 3.0e-26 122.5 125 52.0
HanXRQChr09g0237821 Helianthus annuus HOM05D003317 ORTHO05D003696 3.0e-26 122.5 104 62.5
Psat4g017800 Pisum sativum HOM05D003317 ORTHO05D003696 3.0e-26 122.5 106 61.3
BraA07t28422Z Brassica rapa HOM05D003317 ORTHO05D003696 3.9e-26 122.1 105 61.0
Lsat_1_v5_gn_7_35060 Lactuca sativa HOM05D003317 ORTHO05D003696 3.9e-26 122.1 103 59.2
MBI19_g11829_MAGBIO Magnolia biondii HOM05D003317 ORTHO05D003696 5.1e-26 121.7 110 57.3
MELO3C015517.2 Cucumis melo HOM05D003317 ORTHO05D003696 6.7e-26 121.3 111 55.9
THA.LOC104799577 Tarenaya hassleriana HOM05D003317 ORTHO05D003696 6.7e-26 121.3 108 55.6
AUR62025246 Chenopodium quinoa HOM05D003317 ORTHO05D003696 8.8e-26 120.9 110 54.5
Migut.L01559 Erythranthe guttata HOM05D003317 ORTHO05D003696 8.8e-26 120.9 111 55.9
PSO135G1032 Papaver somniferum HOM05D003317 ORTHO05D003696 1.1e-25 120.6 122 53.3
Duzib168G0118 Durio zibethinus HOM05D003317 ORTHO05D003696 1.5e-25 120.2 96 63.5
A07p06270 Brassica napus HOM05D003317 ORTHO05D003696 1.9e-25 119.8 105 59.0
arahy.Tifrunner.gnm1.ann1.MFQ8D7 Arachis hypogaea HOM05D003317 ORTHO05D003696 3.3e-25 119.0 103 61.2
AUR62028939 Chenopodium quinoa HOM05D003317 ORTHO05D003696 3.3e-25 119.0 110 54.5
HPP92_004371 Vanilla planifolia HOM05D003317 ORTHO05D003696 3.3e-25 119.0 111 56.8
ECA240G4381 Erigeron canadensis HOM05D003317 ORTHO05D003696 4.3e-25 118.6 112 57.1
CARHR103720 Cardamine hirsuta HOM05D003317 ORTHO05D003696 7.4e-25 117.9 111 53.2
AL3G43680 Arabidopsis lyrata HOM05D003317 ORTHO05D003696 9.7e-25 117.5 110 53.6
arahy.Tifrunner.gnm1.ann1.7WMI9V Arachis hypogaea HOM05D003317 ORTHO05D003696 2.8e-24 115.9 125 51.2
arahy.Tifrunner.gnm1.ann1.C19Y0U Arachis hypogaea HOM05D003317 ORTHO05D003696 2.8e-24 115.9 125 51.2
AT2G06040 Arabidopsis thaliana HOM05D003317 ORTHO05D003696 6.3e-24 114.8 106 55.7
SGA_v2.0_scaffold21G09482 Striga asiatica HOM05D003317 ORTHO05D003696 1.4e-23 113.6 109 54.1
EL10Ac8g19064 Beta vulgaris HOM05D003317 ORTHO05D003696 4.1e-23 112.1 125 48.8
FAN26G2208 Fragaria x ananassa HOM05D003317 ORTHO05D003696 2.0e-22 109.8 129 48.1
Zm00001eb040360 Zea mays HOM05D003317 ORTHO05D003696 2.0e-22 109.8 104 54.8
FAN26G0708 Fragaria x ananassa HOM05D003317 ORTHO05D003696 2.6e-22 109.4 129 47.3
Psat4g030640 Pisum sativum HOM05D003317 ORTHO05D003696 2.6e-22 109.4 102 57.8
Zm00001eb177300 Zea mays HOM05D003317 ORTHO05D003696 3.4e-22 109.0 140 45.0
HanXRQChr03g0065631 Helianthus annuus HOM05D003317 ORTHO05D003696 6.5e-21 104.8 105 46.7
Os08g0459100 Oryza sativa ssp. japonica HOM05D003317 ORTHO05D003696 3.2e-20 102.4 104 52.9
Psat4g155280 Pisum sativum HOM05D003317 ORTHO05D003696 9.4e-20 100.9 85 60.0
A03p10450 Brassica napus HOM05D003317 ORTHO05D003696 1.6e-19 100.1 107 47.7
BraA03t10357Z Brassica rapa HOM05D003317 ORTHO05D003696 1.6e-19 100.1 107 47.7
COL.COLO4_18104 Corchorus olitorius HOM05D003317 ORTHO05D003696 1.6e-19 100.1 79 59.5
TPR.G9461 Trifolium pratense HOM05D003317 ORTHO05D003696 2.7e-19 99.4 84 61.9
CARHR191640 Cardamine hirsuta HOM05D003317 ORTHO05D003696 3.6e-19 99.0 108 48.1
Sed0023098 Sechium edule HOM05D003317 ORTHO05D003696 3.6e-19 99.0 85 61.2
GSVIVG01035471001 Vitis vinifera HOM05D003317 ORTHO05D003696 4.7e-19 98.6 98 56.1
MD02G1090300 Malus domestica HOM05D003317 ORTHO05D003696 7.9e-19 97.8 78 61.5
Rhsim03G0227900 Rhododendron simsii HOM05D003317 ORTHO05D003696 7.9e-19 97.8 78 65.4
C03p12020 Brassica napus HOM05D003317 ORTHO05D003696 3.9e-18 95.5 107 46.7
BolC3t13673H Brassica oleracea HOM05D003317 ORTHO05D003696 3.9e-18 95.5 107 46.7
Medtr4g125390 Medicago truncatula HOM05D003317 ORTHO05D003696 3.9e-18 95.5 95 54.7
ATR0598G291 Amborella trichopoda HOM05D003317 ORTHO05D003696 8.8e-18 94.4 98 45.9
AL6G32870 Arabidopsis lyrata HOM05D003317 ORTHO05D003696 2.0e-17 93.2 108 49.1
BcaB01g04757 Brassica carinata HOM05D003317 ORTHO05D003696 2.0e-17 93.2 107 47.7
Sp6g23290 Schrenkiella parvula HOM05D003317 ORTHO05D003696 2.6e-17 92.8 107 44.9
SEGI_25513 Sequoiadendron giganteum HOM05D003317 ORTHO05D003696 2.0e-14 83.2 78 51.3
SEGI_37822 Sequoiadendron giganteum HOM05D003317 ORTHO05D003696 2.6e-14 82.8 78 50.0
AUR62042996 Chenopodium quinoa HOM05D003317 ORTHO05D003696 5.9e-14 81.6 104 41.3
Lj1g0018915 Lotus japonicus HOM05D003317 ORTHO05D003696 7.7e-14 81.3 95 50.5
Aa31sc133G60 Aethionema arabicum HOM05D003317 ORTHO05D003696 3.6e-11 72.4 52 65.4
Carub.0006s1954 Capsella rubella HOM05D003317 ORTHO05D003696 8.0e-11 71.2 85 42.4
Cpa.g.sc28.54 Carica papaya HOM05D003317 ORTHO05D003696 3.9e-10 68.9 47 66.0
PRCOL_00004656 Prasinoderma coloniale HOM05D003317 ORTHO05D003696 6.7e-10 68.2 82 42.7
Psat4g017720 Pisum sativum HOM05D003317 ORTHO05D003696 1.3e-08 63.9 67 53.7
Cre12.g559050 Chlamydomonas reinhardtii HOM05D003317 ORTHO05D003696 6.3e-08 61.6 99 37.4
AL1G20670 Arabidopsis lyrata HOM05D003317 ORTHO05D003696 7.0e-07 58.2 80 37.5
AagrBONN_evm.TU.Sc2ySwM_368.362 Anthoceros agrestis HOM05D003317 ORTHO05D003696 2.0e-06 56.6 87 37.9
Thhalv10015473m.g Eutrema salsugineum HOM05D003317 ORTHO05D003696 2.0e-06 56.6 107 35.5
Peaxi162Scf00486g01021 Petunia axillaris HOM05D003317 ORTHO05D003696 2.6e-06 56.2 44 61.4


User provided reference genes

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