Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 1.2e-46 189.5 94 100.0
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 1.2e-46 189.5 94 100.0
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 2.6e-46 188.3 94 98.9
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 2.7e-43 178.3 94 93.6
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 1.4e-36 156.0 92 81.5
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 1.9e-36 155.6 92 79.3
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 1.8e-34 149.1 93 74.2
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 3.9e-34 147.9 93 73.1
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 6.7e-34 147.1 92 73.9
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 1.1e-33 146.4 93 76.3
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 1.1e-33 146.4 92 73.9
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 1.5e-33 146.0 92 75.0
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 1.9e-33 145.6 92 75.0
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 2.5e-33 145.2 92 73.9
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 4.3e-33 144.4 93 75.3
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 4.3e-33 144.4 93 75.3
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 4.3e-33 144.4 93 75.3
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 7.4e-33 143.7 92 75.0
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 7.4e-33 143.7 87 75.9
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 1.6e-32 142.5 90 73.3
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 2.1e-32 142.1 93 73.1
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 4.8e-32 141.0 92 71.7
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 6.2e-32 140.6 93 73.1
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 3.1e-31 138.3 94 72.3
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 9.0e-31 136.7 93 68.8
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 1.2e-30 136.3 87 74.7
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 2.0e-30 135.6 92 71.7
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 2.0e-30 135.6 94 70.2
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 2.6e-30 135.2 93 67.7
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 3.4e-30 134.8 90 71.1
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 5.8e-30 134.0 92 67.4
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 7.6e-30 133.7 92 70.7
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 7.6e-30 133.7 94 69.1
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 7.6e-30 133.7 94 70.2
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 9.9e-30 133.3 92 69.6
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 9.9e-30 133.3 92 69.6
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 1.7e-29 132.5 93 66.7
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 1.7e-29 132.5 93 66.7
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 1.7e-29 132.5 93 66.7
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 1.7e-29 132.5 93 66.7
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 1.7e-29 132.5 93 66.7
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 1.7e-29 132.5 92 69.6
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 1.7e-29 132.5 94 69.1
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 2.2e-29 132.1 92 69.6
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 2.2e-29 132.1 92 69.6
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 2.2e-29 132.1 93 67.7
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 2.2e-29 132.1 137 53.3
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 2.9e-29 131.7 92 67.4
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 2.9e-29 131.7 89 71.9
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 2.9e-29 131.7 92 69.6
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 3.8e-29 131.3 93 67.7
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 4.9e-29 131.0 93 66.7
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 6.4e-29 130.6 87 70.1
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 8.4e-29 130.2 91 68.1
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 8.4e-29 130.2 92 69.6
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 1.1e-28 129.8 92 68.5
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 1.4e-28 129.4 88 70.5
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 2.5e-28 128.6 94 68.1
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 2.5e-28 128.6 94 68.1
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 3.2e-28 128.3 93 65.6
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 3.2e-28 128.3 94 69.1
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 5.5e-28 127.5 92 67.4
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 5.5e-28 127.5 94 68.1
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 7.1e-28 127.1 93 64.5
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 2.1e-27 125.6 92 64.1
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 3.5e-27 124.8 133 51.9
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 4.6e-27 124.4 93 66.7
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 4.6e-27 124.4 94 63.8
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 6.0e-27 124.0 95 64.2
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 6.0e-27 124.0 92 64.1
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 1.0e-26 123.2 98 64.3
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 1.0e-26 123.2 94 64.9
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 1.8e-26 122.5 87 65.5
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 5.1e-26 120.9 92 64.1
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 1.9e-25 119.0 88 65.9
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 2.5e-25 118.6 88 69.3
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 3.3e-25 118.2 88 65.9
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 9.6e-25 116.7 91 61.5
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 9.6e-25 116.7 84 64.3
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 9.6e-25 116.7 88 69.3
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 2.8e-24 115.2 95 66.3
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.4e-23 112.8 71 74.6
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 2.4e-23 112.1 92 63.0
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 6.9e-23 110.5 70 74.3
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 9.0e-23 110.2 105 56.2
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 3.4e-22 108.2 70 75.7
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 1.0e-21 106.7 70 71.4
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 6.5e-21 104.0 84 59.5
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 1.4e-20 102.8 91 61.5
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 5.5e-20 100.9 164 39.6
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 1.8e-18 95.9 69 68.1
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 3.9e-18 94.7 88 56.8
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 3.3e-17 91.7 65 67.7
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 3.3e-17 91.7 49 81.6
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 1.3e-16 89.7 64 71.9
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 1.3e-16 89.7 64 68.8
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 1.6e-16 89.4 49 81.6
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 1.8e-15 85.9 61 63.9
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 2.4e-15 85.5 54 70.4
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 5.3e-15 84.3 66 68.2
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 1.3e-13 79.7 49 67.3
CAN.G792.73 Capsicum annuum HOM05D003118 ORTHO05D009308 2.9e-13 78.6 46 89.1
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 6.5e-13 77.4 65 61.5
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 4.3e-09 64.7 40 80.0
Haze_08759 Corylus avellana HOM05D007428 ORTHO05D009308 6.9e-07 57.4 28 85.7
HanXRQChr17g0533231 Helianthus annuus HOM05D007428 ORTHO05D009308 9.1e-07 57.0 51 62.7


User provided reference genes

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