Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 0.0e+00 1635.9 829 100.0
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 0.0e+00 1580.8 830 96.9
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 0.0e+00 1498.8 830 92.5
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 0.0e+00 1211.1 809 78.5
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 0.0e+00 1155.2 821 73.8
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 0.0e+00 1144.4 836 72.0
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 5.5e-273 944.5 834 60.1
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 1.1e-270 936.8 834 59.6
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 2.1e-256 889.4 833 57.7
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 3.7e-253 878.6 838 58.4
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 4.9e-229 798.5 803 55.2
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 9.2e-228 794.3 813 54.5
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.0e-218 762.7 819 52.0
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 3.0e-210 736.1 785 53.5
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 5.8e-206 721.8 796 51.6
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.4e-204 716.5 822 50.4
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 7.8e-195 684.9 797 49.1
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 2.5e-193 679.9 850 47.8
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 8.9e-191 671.4 806 47.8
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 1.2e-182 644.4 811 47.2
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 1.1e-180 637.9 815 46.4
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 7.1e-180 635.2 812 45.2
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 2.1e-176 623.6 754 48.1
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.7e-168 596.3 807 45.5
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.9e-165 586.6 794 43.1
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 3.8e-165 586.3 810 44.2
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 5.5e-164 582.4 742 46.6
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 6.0e-163 578.9 861 40.8
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.0e-162 578.2 833 42.6
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 8.7e-162 575.1 815 43.3
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 1.4e-159 567.8 841 42.1
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 5.5e-156 555.8 842 42.2
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 7.2e-156 555.4 792 43.2
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.7e-155 553.5 845 41.1
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 1.9e-153 547.4 818 41.9
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 3.7e-152 543.1 816 40.9
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 6.3e-152 542.3 837 39.9
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 8.2e-152 542.0 836 39.6
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.1e-151 541.6 836 39.4
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 2.4e-151 540.4 813 43.1
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 4.1e-151 539.7 832 41.7
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 2.0e-150 537.3 813 41.1
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.8e-146 524.2 807 40.3
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 1.8e-146 524.2 730 44.0
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 3.9e-146 523.1 817 40.6
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 8.8e-146 521.9 883 38.2
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 1.7e-144 517.7 837 40.1
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 2.2e-144 517.3 824 40.3
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 3.7e-144 516.5 823 40.3
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 9.1e-143 511.9 830 38.3
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 1.5e-142 511.1 822 39.4
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.6e-142 510.4 844 37.9
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 5.9e-142 509.2 848 39.2
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 1.3e-141 508.1 818 40.1
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 4.2e-140 503.1 847 38.4
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.1e-139 500.7 833 40.0
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 3.9e-138 496.5 810 37.9
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 3.9e-138 496.5 782 40.8
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 5.2e-138 496.1 809 38.3
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 7.4e-137 492.3 826 39.1
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 2.2e-136 490.7 829 37.8
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 6.3e-136 489.2 823 38.4
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 6.3e-136 489.2 858 37.4
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 1.1e-135 488.4 920 35.5
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 1.1e-135 488.4 819 38.3
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 3.2e-132 476.9 816 36.4
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 3.2e-132 476.9 958 34.3
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 5.5e-132 476.1 1010 33.0
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 9.4e-132 475.3 939 34.7
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 2.1e-131 474.2 811 39.0
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.4e-130 471.5 812 37.9
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 4.0e-130 469.9 841 37.1
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 8.8e-130 468.8 830 38.2
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.4e-127 460.7 925 34.6
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 3.1e-127 460.3 802 38.7
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 7.0e-127 459.1 850 37.9
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 4.5e-126 456.4 748 41.6
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.7e-125 454.5 840 35.4
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 3.8e-125 453.4 838 35.2
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 4.2e-124 449.9 862 36.8
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 2.6e-121 440.7 810 35.7
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 2.6e-121 440.7 851 36.3
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 8.3e-120 435.6 834 34.8
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 5.5e-116 422.9 563 43.0
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 1.2e-115 421.8 895 34.1
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.4e-113 413.7 959 32.1
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 4.4e-113 413.3 816 33.7
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 4.1e-111 406.8 658 37.7
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 7.0e-111 406.0 803 34.9
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 2.5e-108 397.5 824 34.0
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 6.1e-107 392.9 813 33.0
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 2.3e-106 391.0 837 32.4
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.2e-105 388.7 800 35.6
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 3.7e-104 383.6 812 32.3
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 5.4e-103 379.8 805 33.2
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 1.3e-96 358.6 494 41.5
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 1.3e-96 358.6 785 32.7
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.6e-94 351.7 615 38.9
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.0e-85 320.9 868 30.2
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 4.3e-84 317.0 849 28.9
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 1.6e-83 315.1 612 37.1
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.4e-79 301.2 632 33.2
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 6.6e-77 293.1 571 35.7
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 8.1e-75 286.2 522 37.2
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.1e-74 285.8 462 38.5
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 3.1e-74 284.3 798 29.8
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 6.9e-74 283.1 690 33.6
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 9.0e-74 282.7 652 33.7
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 4.6e-70 270.4 440 38.4
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 1.0e-69 269.2 470 35.7
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 2.5e-68 264.6 445 38.0
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 6.9e-66 256.5 463 36.9
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 3.4e-65 254.2 444 36.9
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.4e-65 254.2 444 37.4
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 7.6e-65 253.1 394 40.6
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 1.3e-64 252.3 801 27.1
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.7e-64 251.9 469 35.6
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 8.4e-64 249.6 457 37.0
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 8.4e-64 249.6 457 37.0
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 9.3e-63 246.1 357 42.9
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.2e-62 245.7 448 36.2
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 4.6e-62 243.8 828 26.6
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 7.9e-62 243.0 440 37.0
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.0e-61 242.7 534 35.2
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 1.0e-61 242.7 442 36.7
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 1.3e-61 242.3 440 37.0
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.3e-61 242.3 522 34.1
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 1.5e-60 238.8 464 35.8
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 4.3e-60 237.3 794 29.3
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.6e-59 235.3 571 33.6
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 6.2e-59 233.4 428 35.5
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 2.6e-57 228.0 474 33.5
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.4e-55 222.2 437 36.6
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 1.2e-54 219.2 489 31.9
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 1.2e-54 219.2 489 31.9
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 1.0e-53 216.1 654 28.6
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 4.3e-52 210.7 403 34.7
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 5.6e-52 210.3 459 34.9
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.8e-50 205.3 849 24.7
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 4.9e-48 197.2 466 33.5
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 9.3e-47 193.0 288 42.4
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 8.2e-43 179.9 500 27.6
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.4e-39 169.1 462 27.9
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 1.5e-36 159.1 105 69.5
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 7.7e-33 146.7 852 23.1
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.1e-31 142.9 135 58.5
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 1.6e-30 139.0 238 39.5
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 6.1e-30 137.1 155 39.4
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 3.0e-29 134.8 100 59.0
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 4.5e-25 120.9 189 40.7
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 4.2e-23 114.4 152 42.8
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 8.8e-21 106.7 738 21.7
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 1.3e-19 102.8 423 26.5
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.7e-19 102.4 143 34.3
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.7e-16 92.4 101 47.5
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 6.1e-14 84.0 98 36.7
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.4e-10 72.8 174 28.2
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.4e-10 72.8 73 43.8
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 2.7e-09 68.6 59 57.6
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 1.7e-08 65.9 84 42.9
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 8.5e-08 63.5 82 34.1
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 2.5e-07 62.0 64 43.8
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 9.4e-07 60.1 50 58.0


User provided reference genes

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