Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 4.2e-59 231.5 146 100.0
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 2.1e-58 229.2 146 98.6
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 5.6e-56 221.1 146 95.2
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.6e-47 193.0 146 84.9
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 6.9e-46 187.6 146 84.9
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 6.9e-46 187.6 146 83.6
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 2.0e-45 186.0 143 85.3
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 1.0e-44 183.7 145 83.4
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 9.3e-43 177.2 146 79.5
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.6e-42 176.4 146 79.5
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 6.3e-39 164.5 139 54.0
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 4.5e-37 158.3 145 73.8
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 1.1e-35 153.7 142 69.7
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 1.1e-35 153.7 139 75.5
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 2.5e-35 152.5 129 76.0
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 4.2e-35 151.8 138 69.6
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 9.4e-35 150.6 137 74.5
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 9.4e-35 150.6 137 74.5
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 1.2e-34 150.2 138 68.8
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 2.1e-34 149.4 129 75.2
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 4.6e-34 148.3 129 74.4
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 6.1e-34 147.9 137 73.0
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 7.9e-34 147.5 129 65.1
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 1.8e-33 146.4 128 71.9
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 1.8e-33 146.4 137 72.3
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 2.3e-33 146.0 139 69.1
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 3.9e-33 145.2 129 72.9
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 8.8e-33 144.1 130 71.5
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 8.8e-33 144.1 129 74.4
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 1.5e-32 143.3 138 63.8
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 1.5e-32 143.3 131 73.3
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.5e-32 143.3 137 71.5
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 1.9e-32 142.9 128 74.2
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 4.3e-32 141.7 88 72.7
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 4.3e-32 141.7 129 72.1
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 4.3e-32 141.7 134 72.4
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 5.7e-32 141.4 142 70.4
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 7.4e-32 141.0 136 70.6
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 7.4e-32 141.0 134 72.4
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 9.7e-32 140.6 129 72.1
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.3e-31 140.2 135 71.1
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.3e-31 140.2 135 71.1
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 1.7e-31 139.8 132 68.9
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 2.2e-31 139.4 134 73.1
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 2.8e-31 139.0 138 69.6
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 1.1e-30 137.1 137 70.1
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 1.4e-30 136.7 140 67.9
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 1.4e-30 136.7 129 69.8
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 2.4e-30 136.0 129 69.0
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 6.9e-30 134.4 139 63.3
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 6.9e-30 134.4 134 70.9
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 1.2e-29 133.7 129 69.0
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 1.2e-29 133.7 129 67.4
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 2.6e-29 132.5 137 67.2
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 2.6e-29 132.5 139 66.9
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 2.6e-29 132.5 129 54.3
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 4.5e-29 131.7 134 69.4
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 4.5e-29 131.7 129 70.5
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 4.5e-29 131.7 131 67.9
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 5.9e-29 131.3 134 59.0
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 3.8e-28 128.6 119 76.5
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 3.8e-28 128.6 144 63.9
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 3.8e-28 128.6 123 73.2
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 5.0e-28 128.3 122 72.1
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 8.5e-28 127.5 140 53.6
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 1.9e-27 126.3 132 68.9
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 4.2e-27 125.2 125 48.0
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 5.5e-27 124.8 131 64.9
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 7.2e-27 124.4 133 63.9
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 7.2e-27 124.4 125 68.8
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 9.4e-27 124.0 139 62.6
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 1.2e-26 123.6 131 65.6
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 2.1e-26 122.9 119 73.1
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 2.7e-26 122.5 83 65.1
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 4.7e-26 121.7 129 63.6
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 7.9e-26 120.9 126 64.3
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 7.9e-26 120.9 126 64.3
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 1.0e-25 120.6 131 62.6
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 1.0e-25 120.6 137 60.6
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 2.3e-25 119.4 126 64.3
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 2.3e-25 119.4 126 64.3
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 3.9e-25 118.6 127 68.5
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 5.1e-25 118.2 118 73.7
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 6.7e-25 117.9 139 59.7
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 1.5e-24 116.7 126 61.9
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 2.0e-24 116.3 135 60.7
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 3.3e-24 115.5 129 61.2
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 4.4e-24 115.2 80 58.8
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 2.8e-23 112.5 80 56.2
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 2.8e-23 112.5 140 53.6
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 2.4e-22 109.4 112 72.3
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 2.4e-22 109.4 131 58.0
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 2.4e-22 109.4 131 58.0
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 3.1e-22 109.0 129 58.9
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 3.1e-22 109.0 141 55.3
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 4.1e-22 108.6 131 57.3
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 2.6e-21 105.9 82 50.0
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 1.0e-20 104.0 131 57.3
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 1.3e-20 103.6 116 47.4
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 1.3e-20 103.6 134 40.3
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 3.8e-20 102.1 137 55.5
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 1.1e-19 100.5 142 38.7
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 1.1e-19 100.5 136 61.0
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 2.5e-19 99.4 100 76.0
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 3.2e-19 99.0 119 57.1
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 9.4e-19 97.4 121 56.2
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 2.7e-18 95.9 131 54.2
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 2.7e-18 95.9 141 53.9
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 2.7e-18 95.9 141 53.9
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 1.5e-16 90.1 120 53.3
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 1.5e-16 90.1 116 58.6
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 7.4e-16 87.8 131 52.7
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 1.3e-15 87.0 133 42.1
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 2.8e-15 85.9 95 64.2
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 3.8e-12 75.5 63 50.8
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 5.0e-12 75.1 120 33.3
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 5.0e-12 75.1 120 33.3
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 6.5e-12 74.7 119 33.6
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 6.5e-12 74.7 119 33.6
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 6.5e-12 74.7 119 33.6
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 1.1e-11 73.9 136 47.1
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 3.2e-11 72.4 122 31.1
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 5.5e-11 71.6 118 33.1
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 5.5e-11 71.6 93 39.8
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 4.4e-08 62.0 58 46.6
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 7.5e-08 61.2 87 52.9
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 3.7e-07 58.9 80 31.2
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 6.3e-07 58.2 96 30.2


User provided reference genes

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