Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 1.3e-200 703.0 383 100.0
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 2.3e-197 692.2 383 98.2
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 4.0e-178 628.2 367 93.7
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 2.3e-165 585.9 369 87.3
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 6.2e-163 577.8 350 90.0
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 1.1e-130 470.7 315 80.0
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 4.5e-129 465.3 328 79.3
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 1.3e-128 463.8 337 74.5
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.7e-128 463.4 368 69.8
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 3.8e-128 462.2 338 75.1
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 5.0e-128 461.8 336 74.1
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 1.1e-127 460.7 371 71.2
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 1.6e-126 456.8 346 73.7
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 1.4e-125 453.8 296 81.8
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 1.8e-125 453.4 354 72.0
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 5.1e-125 451.8 282 89.0
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 5.1e-125 451.8 367 71.4
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 1.1e-124 450.7 345 74.2
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 1.5e-124 450.3 289 82.7
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 2.6e-124 449.5 317 77.3
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 3.3e-124 449.1 350 72.9
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 4.4e-124 448.7 287 81.9
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 4.4e-124 448.7 297 81.5
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 9.7e-124 447.6 318 77.4
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 9.7e-124 447.6 350 72.6
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 9.7e-124 447.6 351 73.8
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 1.7e-123 446.8 288 82.6
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 1.7e-123 446.8 291 81.8
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 2.2e-123 446.4 361 69.3
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 2.8e-123 446.0 325 74.8
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 2.8e-123 446.0 343 72.0
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 2.8e-123 446.0 343 72.0
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 6.3e-123 444.9 354 70.3
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 8.2e-123 444.5 316 77.8
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 1.4e-122 443.7 297 81.1
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 1.8e-122 443.4 318 76.4
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 3.1e-122 442.6 351 72.4
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 5.3e-122 441.8 302 84.4
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 1.6e-121 440.3 266 86.8
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 2.6e-121 439.5 287 82.6
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 3.5e-121 439.1 293 80.9
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 5.9e-121 438.3 264 86.7
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 3.8e-120 435.6 369 67.5
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 3.8e-120 435.6 287 81.9
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 5.0e-120 435.3 297 80.5
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 2.5e-119 433.0 325 76.3
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 3.2e-119 432.6 263 86.3
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 9.4e-119 431.0 334 72.5
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 1.2e-118 430.6 319 76.2
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 1.6e-118 430.3 267 84.3
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 1.6e-118 430.3 289 81.7
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 2.1e-118 429.9 322 75.2
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 2.1e-118 429.9 288 80.9
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 2.7e-118 429.5 355 69.0
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 2.7e-118 429.5 314 77.7
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 2.7e-118 429.5 295 79.0
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 2.7e-118 429.5 316 75.9
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 3.6e-118 429.1 356 70.2
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 3.6e-118 429.1 306 76.5
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 1.0e-117 427.6 338 73.1
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 1.4e-117 427.2 273 83.2
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 1.4e-117 427.2 287 79.4
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 2.3e-117 426.4 376 67.6
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 2.3e-117 426.4 343 72.0
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 2.3e-117 426.4 320 75.0
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 2.3e-117 426.4 320 75.9
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 2.3e-117 426.4 288 80.9
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 4.0e-117 425.6 320 74.7
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 5.2e-117 425.2 348 71.0
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 5.2e-117 425.2 283 80.6
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 6.7e-117 424.9 312 76.3
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 1.5e-116 423.7 333 72.4
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 3.3e-116 422.5 273 82.1
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 3.3e-116 422.5 287 79.8
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 3.3e-116 422.5 297 77.1
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 4.4e-116 422.2 312 76.3
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 7.5e-116 421.4 267 85.4
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 2.8e-115 419.5 267 85.0
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 1.4e-114 417.2 295 77.3
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 1.4e-114 417.2 288 78.8
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 4.1e-114 415.6 280 80.7
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 1.6e-113 413.7 268 83.2
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 4.5e-113 412.1 275 82.5
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 1.9e-111 406.8 405 59.5
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 3.6e-110 402.5 337 70.0
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 3.4e-108 396.0 282 76.2
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 3.5e-105 386.0 318 71.1
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 4.5e-105 385.6 304 71.7
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 4.5e-105 385.6 348 64.9
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 3.8e-104 382.5 306 70.3
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 8.5e-104 381.3 243 83.1
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 1.2e-102 377.5 274 74.1
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 7.5e-100 368.2 311 67.2
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 1.3e-99 367.5 248 77.8
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 2.4e-98 363.2 263 73.8
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 3.1e-98 362.8 324 66.0
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 9.2e-98 361.3 324 65.7
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 2.0e-97 360.1 253 77.5
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 2.7e-97 359.8 368 60.6
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 5.9e-97 358.6 277 73.6
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 1.0e-96 357.8 345 62.6
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 5.6e-95 352.1 322 65.8
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 2.6e-92 343.2 218 85.3
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 2.2e-91 340.1 253 71.1
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 2.1e-86 323.6 195 86.2
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 1.5e-84 317.4 229 76.9
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 1.9e-79 300.4 216 75.9
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 1.6e-78 297.4 260 62.3
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 6.0e-73 278.9 271 61.6
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 5.1e-72 275.8 247 65.2
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 7.6e-68 261.9 260 56.2
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 8.4e-67 258.5 256 57.8
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 1.8e-61 240.7 293 50.5
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 1.2e-60 238.0 270 55.6
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 9.9e-60 235.0 230 64.3
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 7.3e-55 218.8 230 62.2
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 2.0e-52 210.7 170 72.4
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 2.5e-47 193.7 140 78.6
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 9.9e-44 181.8 135 76.3
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 2.1e-38 164.1 98 86.7
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 1.2e-36 158.3 142 67.6
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 4.5e-36 156.4 204 54.4
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 9.3e-34 148.7 93 82.8
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 2.5e-31 140.6 157 54.8
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 7.4e-31 139.0 157 54.1
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 2.5e-26 124.0 113 63.7
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 3.4e-20 103.6 80 68.8
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 1.4e-18 98.2 95 66.3
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 4.6e-17 93.2 60 88.3
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 1.5e-12 78.2 240 32.1
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 3.2e-10 70.5 41 95.1


User provided reference genes

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