Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g024180 Solanum pennellii HOM05D012341 ORTHO05D014559 2.0e-158 562.4 288 100.0
PGSC0003DMG400006144 Solanum tuberosum HOM05D012341 ORTHO05D014559 5.2e-114 414.8 288 76.7
PGSC0003DMG400000671 Solanum tuberosum HOM05D012341 ORTHO05D014559 5.0e-72 275.4 296 53.7
Sopen07g025280 Solanum pennellii HOM05D012341 ORTHO05D014559 1.1e-68 264.2 285 53.0
Solyc07g049250.1 Solanum lycopersicum HOM05D012341 ORTHO05D014559 1.0e-61 241.1 297 48.8
CAN.G664.8 Capsicum annuum HOM05D012341 ORTHO05D014559 3.3e-60 236.1 332 43.7
CAN.G1861.4 Capsicum annuum HOM05D012341 ORTHO05D014559 3.5e-57 226.1 287 48.1
Nitab4.5_0000482g0080 Nicotiana tabacum HOM05D012341 ORTHO05D014559 1.2e-49 201.1 306 40.8
Peaxi162Scf00921g00121 Petunia axillaris HOM05D012341 ORTHO05D014559 1.1e-47 194.5 306 40.2
Nitab4.5_0000482g0130 Nicotiana tabacum HOM05D012341 ORTHO05D014559 2.6e-44 183.3 297 38.7
CAN.G664.6 Capsicum annuum HOM05D012341 ORTHO05D014559 3.6e-38 162.9 283 39.6
Nitab4.5_0003449g0020 Nicotiana tabacum HOM05D012341 ORTHO05D014559 4.4e-36 156.0 300 39.3
Nitab4.5_0029075g0010 Nicotiana tabacum HOM05D012341 ORTHO05D014559 9.2e-34 148.3 290 38.3
Peaxi162Scf00921g00003 Petunia axillaris HOM05D012341 ORTHO05D014559 7.8e-33 145.2 216 38.4
Peaxi162Scf00231g00246 Petunia axillaris HOM05D000007 ORTHO05D000017 3.6e-22 109.8 117 47.9
Pp3c24_13770 Physcomitrium patens HOM05D000629 ORTHO05D000576 4.7e-14 82.8 138 31.9
Pp3c24_19330 Physcomitrium patens HOM05D000629 ORTHO05D000576 4.7e-14 82.8 138 32.6
A03p06900 Brassica napus HOM05D000629 ORTHO05D000576 1.2e-12 78.2 129 31.0
BraA03t10012Z Brassica rapa HOM05D000629 ORTHO05D000576 1.2e-12 78.2 129 31.0
Pp3c8_14940 Physcomitrium patens HOM05D000629 ORTHO05D000576 3.4e-12 76.6 227 23.3
Dinv21339 Davidia involucrata HOM05D000629 ORTHO05D000576 4.9e-11 72.8 291 24.7
Manes.17G117254 Manihot esculenta HOM05D000629 ORTHO05D000576 8.3e-11 72.0 129 31.0
Pp3c8_19010 Physcomitrium patens HOM05D000629 ORTHO05D000576 8.3e-11 72.0 196 26.5
Cpa.g.c28922 Carica papaya HOM05D000629 ORTHO05D000576 1.1e-10 71.6 177 27.1
C02p07460 Brassica napus HOM05D000629 ORTHO05D000576 1.4e-10 71.2 129 29.5
BolC2t06677H Brassica oleracea HOM05D000629 ORTHO05D000576 1.4e-10 71.2 129 29.5
Sabra16G0229600 Salix brachista HOM05D000629 ORTHO05D000576 1.4e-10 71.2 126 31.7
A02p02840 Brassica napus HOM05D000629 ORTHO05D000576 2.4e-10 70.5 130 30.0
BraA02t05257Z Brassica rapa HOM05D000629 ORTHO05D000576 2.4e-10 70.5 130 30.0
Aa31LG4G10840 Aethionema arabicum HOM05D000629 ORTHO05D000576 4.1e-10 69.7 133 28.6
Potri.001G350200 Populus trichocarpa HOM05D000629 ORTHO05D000576 4.1e-10 69.7 129 30.2
Sc11g0008010 Simmondsia chinensis HOM05D000629 ORTHO05D000576 7.1e-10 68.9 129 30.2
GSVIVG01032579001 Vitis vinifera HOM05D000629 ORTHO05D000576 7.1e-10 68.9 155 29.7
AUR62039393 Chenopodium quinoa HOM05D000629 ORTHO05D000576 1.6e-09 67.8 129 30.2
HanXRQChr14g0448871 Helianthus annuus HOM05D000629 ORTHO05D000576 1.6e-09 67.8 129 28.7
CAN.G206.78 Capsicum annuum HOM05D000629 ORTHO05D000576 2.7e-09 67.0 166 28.3
Migut.K01349 Erythranthe guttata HOM05D000629 ORTHO05D000576 2.7e-09 67.0 223 26.5
Hma1.2p1_0265F.1_g106320 Hydrangea macrophylla HOM05D000629 ORTHO05D000576 2.7e-09 67.0 161 27.3
CARHR024590 Cardamine hirsuta HOM05D000629 ORTHO05D000576 4.6e-09 66.2 133 27.8
ECA234G2364 Erigeron canadensis HOM05D000629 ORTHO05D000576 4.6e-09 66.2 152 28.9
AT1G24190 Arabidopsis thaliana HOM05D000629 ORTHO05D000576 7.8e-09 65.5 133 27.8
AL1G38020 Arabidopsis lyrata HOM05D000629 ORTHO05D000576 1.0e-08 65.1 133 27.8
Carub.0001s2368 Capsella rubella HOM05D000629 ORTHO05D000576 1.3e-08 64.7 133 27.8
ECA246G4457 Erigeron canadensis HOM05D000629 ORTHO05D000576 1.3e-08 64.7 129 28.7
AL3G10910 Arabidopsis lyrata HOM05D000629 ORTHO05D000576 1.7e-08 64.3 129 29.5
HanXRQChr15g0474281 Helianthus annuus HOM05D000629 ORTHO05D000576 1.7e-08 64.3 126 28.6
Cre03.g180800 Chlamydomonas reinhardtii HOM05D000629 ORTHO05D000576 2.3e-08 63.9 135 25.2
Zm00001eb334400 Zea mays HOM05D000629 ORTHO05D000576 3.0e-08 63.5 156 23.7
Mapoly0266s0002 Marchantia polymorpha HOM05D000629 ORTHO05D000576 3.9e-08 63.2 133 28.6
Carub.0003s0081 Capsella rubella HOM05D000629 ORTHO05D000576 5.1e-08 62.8 129 29.5
FAN08G1271 Fragaria x ananassa HOM05D000629 ORTHO05D000576 5.1e-08 62.8 300 20.3
HanXRQChr12g0385641 Helianthus annuus HOM05D000629 ORTHO05D000576 5.1e-08 62.8 219 23.7
CARHR075690 Cardamine hirsuta HOM05D000629 ORTHO05D000576 6.6e-08 62.4 129 28.7
COL.COLO4_36271 Corchorus olitorius HOM05D000629 ORTHO05D000576 1.1e-07 61.6 130 27.7
Sc11g0008020 Simmondsia chinensis HOM05D000629 ORTHO05D000576 1.1e-07 61.6 148 25.0
BcaC06g31798 Brassica carinata HOM05D000629 ORTHO05D000576 1.5e-07 61.2 182 26.4
BcaC06g31799 Brassica carinata HOM05D000629 ORTHO05D000576 1.5e-07 61.2 182 26.4
AUR62014568 Chenopodium quinoa HOM05D000629 ORTHO05D000576 1.5e-07 61.2 203 24.6
MCO01G398 Micromonas commoda HOM05D000629 ORTHO05D000576 1.9e-07 60.8 154 25.3
Carub.0001s2369 Capsella rubella HOM05D000629 ORTHO05D013463 3.3e-07 60.1 155 29.0
FvH4_5g22630 Fragaria vesca HOM05D000629 ORTHO05D014635 3.3e-07 60.1 294 19.7
FAN18G1989 Fragaria x ananassa HOM05D000629 ORTHO05D014635 3.3e-07 60.1 294 19.7
FAN18G3419 Fragaria x ananassa HOM05D000629 ORTHO05D014635 3.3e-07 60.1 294 19.7
MCO01G416 Micromonas commoda HOM05D000629 ORTHO05D000576 4.3e-07 59.7 130 26.9
Os01g0109700 Oryza sativa ssp. japonica HOM05D000629 ORTHO05D000576 7.3e-07 58.9 126 26.2
COL.COLO4_36272 Corchorus olitorius HOM05D000629 ORTHO05D000576 9.5e-07 58.5 105 31.4
PSO541G4761 Papaver somniferum HOM05D000629 ORTHO05D000576 9.5e-07 58.5 131 27.5
FAN04G3120 Fragaria x ananassa HOM05D000629 ORTHO05D000576 2.8e-06 57.0 140 25.0
Gohir.A01G205700 Gossypium hirsutum HOM05D023196 ORTHO05D020511 3.6e-06 56.6 117 28.2
Zm00001eb267730 Zea mays HOM05D000629 ORTHO05D000576 3.6e-06 56.6 133 26.3


User provided reference genes

Program Settings