Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 2.5e-101 372.1 183 100.0
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 3.3e-77 292.0 181 81.2
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 9.5e-77 290.4 181 80.7
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 3.6e-76 288.5 181 80.1
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 2.3e-75 285.8 180 78.3
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 3.0e-75 285.4 181 78.5
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 3.0e-75 285.4 181 78.5
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 2.2e-73 279.3 181 76.2
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 2.0e-71 272.7 180 73.9
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 1.3e-70 270.0 180 73.3
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 5.0e-70 268.1 180 73.9
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 6.6e-70 267.7 180 72.8
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 8.6e-70 267.3 181 72.9
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 1.1e-69 266.9 180 71.7
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 1.1e-69 266.9 180 71.7
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.1e-69 266.9 180 72.8
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.5e-69 266.5 179 73.2
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 1.5e-69 266.5 180 72.8
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 1.5e-69 266.5 180 72.2
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.9e-69 266.2 180 71.7
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.9e-69 266.2 180 72.2
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 1.9e-69 266.2 179 73.2
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 2.5e-69 265.8 180 71.7
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 3.3e-69 265.4 180 71.1
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 3.3e-69 265.4 180 72.2
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 4.3e-69 265.0 180 71.1
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 4.3e-69 265.0 180 71.1
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.3e-69 265.0 180 71.7
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 4.3e-69 265.0 180 71.1
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 5.6e-69 264.6 180 71.7
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 5.6e-69 264.6 180 72.8
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 5.6e-69 264.6 180 72.2
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 7.3e-69 264.2 180 70.0
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 9.5e-69 263.8 182 70.9
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 1.2e-68 263.5 180 72.2
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 1.2e-68 263.5 180 70.6
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.2e-68 263.5 180 71.7
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 1.6e-68 263.1 180 70.0
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.6e-68 263.1 180 70.6
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 1.6e-68 263.1 180 71.1
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 1.6e-68 263.1 180 71.1
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 1.6e-68 263.1 180 71.7
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 2.1e-68 262.7 180 72.2
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.8e-68 262.3 180 71.1
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.8e-68 262.3 180 71.1
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 2.8e-68 262.3 180 71.1
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 2.8e-68 262.3 180 72.2
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 2.8e-68 262.3 180 71.1
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 2.8e-68 262.3 180 71.1
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.6e-68 261.9 180 70.6
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 4.7e-68 261.5 180 71.1
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 4.7e-68 261.5 179 70.9
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 8.0e-68 260.8 180 69.4
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.1e-67 260.4 180 70.0
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.1e-67 260.4 180 70.6
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 1.8e-67 259.6 180 69.4
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 2.3e-67 259.2 180 69.4
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 2.3e-67 259.2 180 69.4
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 2.3e-67 259.2 180 70.6
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 3.1e-67 258.8 180 69.4
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 3.1e-67 258.8 180 70.6
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 3.1e-67 258.8 180 70.6
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 3.1e-67 258.8 180 69.4
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 4.0e-67 258.5 180 69.4
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 4.0e-67 258.5 180 68.9
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 5.2e-67 258.1 181 70.7
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 5.2e-67 258.1 181 71.8
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 5.2e-67 258.1 181 69.1
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 6.8e-67 257.7 180 69.4
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 6.8e-67 257.7 180 69.4
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 6.8e-67 257.7 180 68.3
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 6.8e-67 257.7 179 70.4
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 6.8e-67 257.7 180 69.4
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 8.9e-67 257.3 180 70.0
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 8.9e-67 257.3 181 69.6
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 8.9e-67 257.3 180 68.9
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 8.9e-67 257.3 180 69.4
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 8.9e-67 257.3 180 70.0
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.2e-66 256.9 180 68.9
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 1.2e-66 256.9 180 68.3
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.2e-66 256.9 179 72.1
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.2e-66 256.9 179 72.1
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 1.5e-66 256.5 182 67.6
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 1.5e-66 256.5 180 67.8
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.5e-66 256.5 179 69.8
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 2.0e-66 256.1 180 69.4
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 2.0e-66 256.1 180 69.4
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 2.0e-66 256.1 180 69.4
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 2.6e-66 255.8 180 70.0
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 3.4e-66 255.4 180 69.4
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 5.8e-66 254.6 180 68.9
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 7.5e-66 254.2 181 68.5
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 9.8e-66 253.8 180 68.3
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 1.7e-65 253.1 180 68.9
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 2.2e-65 252.7 180 68.9
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 2.2e-65 252.7 180 68.3
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 2.9e-65 252.3 180 68.3
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 1.9e-64 249.6 180 67.2
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 1.9e-64 249.6 180 66.1
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 2.4e-64 249.2 180 67.2
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 3.2e-64 248.8 180 68.3
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 3.2e-64 248.8 180 67.2
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 4.1e-64 248.4 180 67.8
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 4.1e-64 248.4 180 66.7
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 5.4e-64 248.1 180 67.8
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 5.4e-64 248.1 180 67.8
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 5.4e-64 248.1 180 67.8
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 9.2e-64 247.3 180 67.2
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 9.2e-64 247.3 180 67.2
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 2.0e-63 246.1 171 71.3
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 2.0e-63 246.1 180 66.7
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 2.7e-63 245.7 180 67.2
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 2.7e-63 245.7 180 67.2
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 3.5e-63 245.4 180 67.2
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 4.6e-63 245.0 180 66.7
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 6.0e-63 244.6 180 66.7
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 6.0e-63 244.6 180 66.7
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 1.3e-62 243.4 180 66.1
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 1.3e-62 243.4 180 66.1
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 1.3e-62 243.4 180 66.1
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 5.0e-62 241.5 181 65.7
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 5.0e-62 241.5 180 65.6
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 7.3e-61 237.7 180 63.9
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 4.4e-58 228.4 159 71.7
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 4.9e-57 224.9 180 60.6
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.1e-56 223.8 180 60.0
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 1.9e-56 223.0 179 59.8
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 1.9e-56 223.0 162 67.9
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 7.1e-56 221.1 158 69.0
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.2e-55 220.3 157 69.4
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 7.8e-55 217.6 167 65.3
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.7e-54 216.5 152 69.7
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 1.2e-52 210.3 179 55.3
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 1.6e-52 209.9 180 59.4
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 3.6e-52 208.8 163 65.0
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 6.2e-52 208.0 179 57.5
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 5.1e-46 188.3 140 64.3
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 5.1e-46 188.3 140 64.3
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 1.3e-38 163.7 121 65.3
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 5.1e-38 161.8 184 48.4
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 8.7e-38 161.0 179 47.5
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.5e-37 159.5 132 62.9
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 9.0e-35 151.0 100 73.0
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.7e-33 146.7 93 77.4
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 4.9e-33 145.2 187 43.3
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 4.5e-26 122.1 183 37.7
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 6.4e-25 118.2 184 40.8
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 2.4e-19 99.8 69 71.0


User provided reference genes

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