Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 3.4e-309 1064.3 595 100.0
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 3.0e-297 1024.6 595 96.8
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 3.7e-295 1017.7 596 95.5
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 1.6e-242 842.8 599 78.1
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 6.6e-236 820.8 607 76.4
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.6e-226 789.6 607 74.8
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 3.3e-203 712.2 608 69.7
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 2.5e-158 563.1 612 56.7
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 4.5e-144 515.8 592 51.0
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 2.7e-133 479.9 602 49.8
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 2.0e-131 473.8 602 47.3
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 1.3e-130 471.1 589 49.6
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 4.8e-130 469.2 586 48.0
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 9.1e-129 464.9 596 46.0
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 3.8e-127 459.5 584 49.0
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 8.5e-127 458.4 594 49.3
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 8.5e-127 458.4 594 49.3
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 3.2e-126 456.4 595 46.1
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 5.5e-126 455.7 600 47.0
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 2.1e-125 453.8 586 50.0
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 2.1e-125 453.8 583 49.6
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.7e-125 453.4 593 47.7
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 1.8e-124 450.7 586 47.1
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 4.0e-124 449.5 584 50.0
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 5.2e-124 449.1 579 46.8
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 8.8e-124 448.4 586 50.9
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 1.7e-122 444.1 588 48.6
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.8e-122 443.4 585 46.2
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 3.7e-122 443.0 584 49.1
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 6.3e-122 442.2 600 47.8
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 1.1e-121 441.4 576 48.4
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.4e-121 441.0 585 46.2
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 1.8e-121 440.7 584 43.7
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 2.4e-121 440.3 584 45.0
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 2.4e-121 440.3 560 50.4
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 1.2e-120 438.0 565 48.7
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.6e-120 437.6 585 45.1
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 4.5e-120 436.0 581 44.9
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 5.9e-120 435.6 585 45.0
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 7.7e-120 435.3 589 48.0
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 2.3e-119 433.7 585 45.5
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 2.9e-119 433.3 595 45.7
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 3.8e-119 433.0 553 49.0
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 6.6e-119 432.2 553 51.9
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 1.1e-118 431.4 593 44.2
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 3.3e-118 429.9 586 47.8
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 4.3e-118 429.5 581 43.2
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 1.2e-117 427.9 578 49.7
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 4.7e-117 426.0 550 52.7
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 6.1e-117 425.6 550 52.7
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 6.1e-117 425.6 581 50.8
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 6.1e-117 425.6 589 45.7
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 3.0e-116 423.3 583 43.1
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 1.2e-115 421.4 579 50.4
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 1.5e-115 421.0 582 45.5
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 4.4e-115 419.5 579 47.0
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 4.4e-115 419.5 581 46.5
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 4.4e-115 419.5 586 43.3
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 5.7e-115 419.1 610 42.5
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.5e-115 418.7 553 52.6
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 9.8e-115 418.3 607 43.8
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 1.3e-114 417.9 609 43.8
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 2.9e-114 416.8 593 44.2
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 2.9e-114 416.8 591 47.7
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 1.4e-113 414.5 594 44.6
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 9.2e-113 411.8 591 47.2
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 1.2e-112 411.4 558 44.6
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 1.3e-111 407.9 582 49.7
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 2.3e-111 407.1 564 47.0
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 4.3e-110 402.9 601 46.8
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 7.3e-110 402.1 584 43.7
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 7.3e-110 402.1 580 45.9
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 2.1e-109 400.6 556 42.1
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 1.0e-108 398.3 587 49.7
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 3.1e-108 396.7 601 41.6
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 4.0e-108 396.4 588 46.4
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 2.2e-106 390.6 597 40.0
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 1.1e-105 388.3 595 42.4
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 4.1e-105 386.3 587 40.0
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 3.5e-104 383.3 568 40.5
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 2.3e-103 380.6 568 40.3
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 3.0e-103 380.2 546 49.1
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 3.9e-103 379.8 587 45.5
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 5.0e-103 379.4 597 40.7
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 5.0e-103 379.4 575 40.5
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 5.6e-102 375.9 567 39.9
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 7.3e-102 375.6 574 40.1
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 8.1e-101 372.1 573 39.3
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 8.1e-101 372.1 576 40.8
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 4.0e-100 369.8 572 42.8
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 5.2e-100 369.4 569 40.2
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 1.5e-99 367.9 568 40.3
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 4.9e-98 362.8 593 38.4
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 7.1e-97 359.0 558 39.1
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 2.1e-96 357.5 518 41.7
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 7.8e-96 355.5 571 44.7
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 1.0e-95 355.1 580 40.3
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.3e-95 354.0 472 43.2
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 5.6e-94 349.4 501 43.5
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 2.3e-92 344.0 584 41.6
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 7.6e-91 339.0 590 38.8
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 7.3e-86 322.4 328 50.3
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 8.1e-85 318.9 312 54.2
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 3.2e-81 307.0 713 32.8
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.7e-80 303.9 652 36.2
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 3.5e-80 303.5 588 37.8
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 3.0e-79 300.4 543 40.5
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 2.5e-78 297.4 558 36.2
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 3.6e-77 293.5 496 38.7
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 2.4e-76 290.8 584 40.6
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 2.9e-74 283.9 286 49.0
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 9.3e-73 278.9 265 51.7
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 4.6e-72 276.6 517 35.8
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 2.3e-71 274.2 612 38.1
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 6.6e-71 272.7 538 36.8
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 1.6e-69 268.1 580 36.0
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 4.9e-66 256.5 572 32.2
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 3.2e-65 253.8 479 38.6
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.0e-58 232.3 676 28.6
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 2.1e-53 214.5 652 28.2
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 8.2e-53 212.6 298 37.6
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 1.5e-51 208.4 211 48.3
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 4.5e-51 206.8 560 28.8
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 3.2e-49 200.7 573 29.5
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 4.6e-48 196.8 165 60.6
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 1.1e-46 192.2 453 40.6
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 2.0e-43 181.4 519 34.7
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 6.3e-37 159.8 169 48.5
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 1.8e-36 158.3 181 55.2
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 1.3e-34 152.1 289 31.5
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 6.5e-34 149.8 270 33.7
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.5e-30 138.7 499 23.8
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 1.3e-29 135.6 155 54.2
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.8e-28 131.7 581 24.3
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 2.9e-26 124.4 144 46.5
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 4.7e-24 117.1 217 33.6
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 2.8e-21 107.8 163 35.0
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 1.1e-17 95.9 79 57.0
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.1e-17 95.9 79 57.0
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 1.6e-16 92.0 117 49.6
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 4.5e-11 73.9 67 53.7
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 1.9e-09 68.6 111 36.0
Cfa026542 Carpinus fangiana HOM05D005537 ORTHO05D124841 8.0e-08 63.2 135 33.3


User provided reference genes

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