Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 4.3e-165 584.7 327 100.0
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 3.1e-163 578.6 327 99.4
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 4.2e-128 461.8 327 74.3
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 2.4e-123 446.0 321 74.5
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.6e-121 438.0 341 69.8
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 7.3e-120 434.5 375 64.5
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.3e-118 429.5 251 83.7
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.3e-116 423.7 316 71.5
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 1.4e-99 367.1 255 71.0
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.9e-99 366.7 255 69.4
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 7.8e-98 361.3 255 68.6
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.6e-95 353.6 327 64.5
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 4.7e-95 352.1 251 67.3
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 3.1e-94 349.4 270 63.0
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.2e-93 347.4 275 60.4
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 1.5e-93 347.1 326 53.4
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 5.4e-91 338.6 253 66.0
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 2.3e-89 333.2 255 65.1
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 5.1e-89 332.0 330 56.1
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 1.5e-88 330.5 262 60.7
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 9.6e-88 327.8 259 59.5
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.6e-87 327.0 239 84.5
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 3.6e-87 325.9 251 62.5
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 4.8e-87 325.5 251 61.8
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 6.2e-87 325.1 279 57.0
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 3.1e-86 322.8 255 60.4
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 4.0e-86 322.4 252 62.3
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 9.0e-86 321.2 251 60.6
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 1.5e-85 320.5 280 56.1
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 4.4e-85 318.9 255 59.2
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 9.9e-85 317.8 251 61.8
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 9.9e-85 317.8 251 59.4
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.3e-84 317.4 270 56.7
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 4.9e-84 315.5 258 58.9
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 2.4e-83 313.2 250 59.2
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 4.2e-83 312.4 255 58.8
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 5.4e-83 312.0 256 58.6
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 7.1e-83 311.6 271 56.5
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 9.3e-83 311.2 275 55.3
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.2e-82 310.8 250 59.6
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.2e-82 310.8 250 59.2
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.2e-82 310.8 322 49.1
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.1e-82 310.1 287 55.1
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 3.5e-82 309.3 251 58.2
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 3.5e-82 309.3 251 59.8
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 4.6e-82 308.9 251 58.6
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 6.0e-82 308.5 261 57.9
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 7.8e-82 308.1 296 58.1
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 1.3e-81 307.4 251 58.6
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 1.3e-81 307.4 268 56.3
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 1.3e-81 307.4 257 56.4
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 1.3e-81 307.4 256 58.6
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.1e-80 304.3 254 58.3
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 1.9e-80 303.5 277 52.7
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 2.1e-79 300.1 250 56.4
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 4.8e-79 298.9 261 57.1
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 1.8e-78 297.0 251 56.2
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 9.0e-78 294.7 273 53.5
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 9.0e-78 294.7 252 57.9
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 4.5e-77 292.4 269 53.2
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 2.9e-76 289.7 371 44.2
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 3.8e-76 289.3 279 52.0
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 6.4e-76 288.5 236 59.7
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 1.4e-75 287.3 251 55.4
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 1.9e-75 287.0 250 54.0
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.9e-75 287.0 254 55.1
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 4.2e-75 285.8 254 54.7
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 4.6e-74 282.3 384 41.9
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.3e-73 280.0 250 54.4
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 2.3e-73 280.0 265 52.8
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 1.9e-72 276.9 257 53.3
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.3e-72 276.2 250 54.0
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 3.3e-72 276.2 246 55.7
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 9.6e-72 274.6 251 55.8
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.1e-71 273.5 256 52.7
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 6.2e-71 271.9 248 52.8
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 8.1e-71 271.6 256 53.9
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 1.8e-70 270.4 255 48.2
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 1.8e-70 270.4 255 48.2
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 4.0e-70 269.2 251 53.0
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 5.3e-70 268.9 255 47.5
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.5e-69 267.3 251 51.4
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 2.0e-69 266.9 251 51.8
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 2.6e-69 266.5 251 51.4
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 7.6e-69 265.0 266 51.9
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 1.3e-68 264.2 270 48.5
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 8.4e-68 261.5 249 52.2
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 8.4e-68 261.5 271 49.1
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.4e-67 260.8 244 52.0
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 6.0e-66 255.4 251 50.2
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 7.9e-66 255.0 248 50.4
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 2.3e-65 253.4 248 50.0
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 2.3e-65 253.4 248 50.8
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 3.0e-65 253.1 248 50.8
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 3.9e-65 252.7 249 49.4
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 1.1e-64 251.1 254 48.8
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 4.3e-64 249.2 249 48.6
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 1.3e-63 247.7 248 49.6
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 2.8e-63 246.5 271 44.6
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 6.2e-63 245.4 276 46.4
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 1.4e-62 244.2 181 64.1
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.5e-61 240.7 254 47.6
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 2.6e-61 240.0 259 46.7
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 2.6e-61 240.0 254 47.6
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.6e-61 240.0 254 47.6
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 3.4e-61 239.6 268 45.5
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 5.8e-61 238.8 269 45.0
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.2e-60 236.9 254 47.2
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.8e-60 236.1 254 47.2
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 5.0e-60 235.7 229 62.0
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 5.0e-60 235.7 185 63.2
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 7.1e-59 231.9 218 51.8
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 2.7e-58 229.9 174 64.9
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 2.8e-55 219.9 258 46.1
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 1.4e-54 217.6 218 50.5
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.4e-54 217.6 213 60.1
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.4e-54 216.9 124 83.9
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.2e-53 214.5 253 43.1
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 6.5e-52 208.8 272 43.4
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.4e-51 207.6 182 54.4
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 1.4e-49 201.1 209 48.8
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 3.3e-48 196.4 249 44.2
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 5.0e-44 182.6 214 47.7
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.9e-43 180.6 154 55.8
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 9.4e-43 178.3 140 60.7
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 2.7e-42 176.8 103 76.7
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.4e-41 174.5 183 50.3
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.2e-39 167.2 244 40.2
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 6.3e-39 165.6 128 61.7
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.0e-36 158.3 181 48.1
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.7e-36 157.5 266 35.7
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 3.2e-35 153.3 149 49.0
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 4.0e-33 146.4 325 30.8
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.0e-28 131.7 176 43.2
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 8.5e-28 128.6 245 34.3
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 8.5e-28 128.6 262 32.4
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 4.2e-27 126.3 249 31.7
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 9.4e-27 125.2 218 37.2
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 2.8e-23 113.6 167 40.1
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 4.8e-23 112.8 237 30.0
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.2e-21 108.2 86 62.8
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 8.5e-20 102.1 92 51.1
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 2.3e-17 94.0 142 40.1
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.5e-16 91.3 234 29.1
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.3e-15 88.2 73 63.0
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 2.2e-15 87.4 71 57.7
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 5.4e-14 82.8 132 33.3
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.2e-13 81.6 61 67.2
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 1.2e-13 81.6 204 28.9
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 2.0e-13 80.9 142 35.2
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 2.0e-13 80.9 142 35.2
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 4.5e-13 79.7 66 57.6
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 6.6e-12 75.9 84 44.0
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 4.2e-11 73.2 61 55.7
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 3.6e-10 70.1 147 29.3
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 4.0e-09 66.6 55 60.0
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 2.4e-06 57.4 75 36.0


User provided reference genes

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