Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 1.3e-120 436.4 221 100.0
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 7.1e-119 430.6 221 97.7
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 2.1e-118 429.1 221 97.7
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 2.1e-118 429.1 221 97.3
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 3.5e-118 428.3 221 97.3
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 6.6e-117 424.1 221 96.8
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 5.6e-116 421.0 221 95.0
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 4.8e-115 417.9 221 94.6
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 2.1e-107 392.5 221 87.8
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 8.1e-107 390.6 221 87.8
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 1.1e-106 390.2 221 87.3
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 6.4e-104 380.9 218 87.2
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 1.9e-103 379.4 221 86.9
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 2.4e-103 379.0 221 85.1
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 2.4e-103 379.0 220 87.3
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 2.1e-102 375.9 221 85.1
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 2.7e-102 375.6 221 85.1
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 4.6e-102 374.8 221 84.2
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 4.6e-102 374.8 218 85.8
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 6.0e-102 374.4 221 83.7
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 2.3e-101 372.5 221 85.5
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 2.3e-101 372.5 221 85.1
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 2.3e-101 372.5 221 85.1
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 2.3e-101 372.5 222 84.7
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 2.3e-101 372.5 221 85.5
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 3.0e-101 372.1 221 85.1
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 5.1e-101 371.3 221 85.1
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 5.1e-101 371.3 221 85.1
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 5.1e-101 371.3 221 85.1
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 5.1e-101 371.3 221 85.5
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 5.1e-101 371.3 222 83.3
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 6.7e-101 370.9 221 83.7
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 8.7e-101 370.5 220 83.6
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 8.7e-101 370.5 218 84.9
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 1.1e-100 370.2 221 85.1
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.1e-100 370.2 222 83.3
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.5e-100 369.8 222 83.3
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 1.9e-100 369.4 221 84.2
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 1.9e-100 369.4 221 82.8
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 1.9e-100 369.4 221 83.3
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 2.5e-100 369.0 221 84.2
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 2.5e-100 369.0 221 83.7
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 2.5e-100 369.0 221 84.6
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 3.3e-100 368.6 221 84.2
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 3.3e-100 368.6 221 84.2
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 3.3e-100 368.6 222 84.2
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 4.3e-100 368.2 221 82.8
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 5.6e-100 367.9 221 83.3
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 5.6e-100 367.9 223 83.0
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 7.4e-100 367.5 221 82.8
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 2.1e-99 365.9 221 83.3
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 3.7e-99 365.2 221 82.8
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 3.7e-99 365.2 221 81.4
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 6.2e-99 364.4 222 83.3
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.1e-98 363.6 221 82.8
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 1.1e-98 363.6 221 84.2
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 1.1e-98 363.6 222 84.2
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 1.4e-98 363.2 218 82.1
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 2.4e-98 362.5 220 82.7
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 9.0e-98 360.5 218 81.2
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 9.0e-98 360.5 222 82.4
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 9.0e-98 360.5 222 80.6
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 9.0e-98 360.5 218 81.2
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.5e-97 359.8 218 83.0
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 3.4e-97 358.6 219 82.2
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 4.5e-97 358.2 218 80.7
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 5.8e-97 357.8 221 81.0
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 7.6e-97 357.5 221 80.5
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 7.6e-97 357.5 221 81.0
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.0e-96 357.1 218 82.6
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 1.7e-96 356.3 221 80.5
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 1.7e-96 356.3 221 80.5
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 1.7e-96 356.3 218 82.1
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 2.2e-96 355.9 222 80.2
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 2.9e-96 355.5 218 82.1
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.9e-96 355.5 218 82.1
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 4.9e-96 354.8 217 81.6
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 8.4e-96 354.0 222 79.7
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 8.4e-96 354.0 220 83.6
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 8.4e-96 354.0 220 83.6
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 8.4e-96 354.0 221 80.1
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 1.1e-95 353.6 219 81.3
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.1e-95 353.6 218 81.7
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 1.4e-95 353.2 230 78.7
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 1.4e-95 353.2 222 78.8
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 1.9e-95 352.8 222 81.1
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 3.2e-95 352.1 221 79.6
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 4.2e-95 351.7 222 79.3
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 5.5e-95 351.3 222 79.7
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 7.1e-95 350.9 221 79.6
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 7.1e-95 350.9 223 79.4
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 9.3e-95 350.5 223 81.6
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 9.3e-95 350.5 215 81.4
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 1.2e-94 350.1 222 80.6
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 1.2e-94 350.1 219 79.9
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 1.6e-94 349.7 219 79.9
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 2.7e-94 349.0 216 81.0
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 4.6e-94 348.2 225 78.7
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 4.6e-94 348.2 215 80.0
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 4.6e-94 348.2 221 79.6
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 6.0e-94 347.8 219 79.5
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 7.9e-94 347.4 219 80.8
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 1.0e-93 347.1 222 78.4
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 2.3e-93 345.9 218 78.4
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 3.0e-93 345.5 217 82.0
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 3.0e-93 345.5 219 78.5
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 5.1e-93 344.7 219 78.5
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 1.9e-92 342.8 218 77.5
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 1.9e-92 342.8 219 78.1
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 3.3e-92 342.0 219 78.5
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 3.3e-92 342.0 221 80.5
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 4.3e-92 341.7 222 77.5
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 5.7e-92 341.3 219 79.0
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 2.8e-91 339.0 223 77.6
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 1.1e-90 337.0 227 76.7
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.1e-90 337.0 220 75.5
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 2.4e-90 335.9 223 77.6
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 9.0e-90 334.0 219 76.7
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 3.4e-89 332.0 221 75.1
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 2.8e-83 312.4 222 73.0
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 1.7e-80 303.1 165 87.9
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 2.9e-80 302.4 199 75.9
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 3.2e-79 298.9 224 70.5
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 2.3e-77 292.7 220 71.8
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 2.0e-76 289.7 195 73.8
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 7.4e-76 287.7 165 86.1
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 4.1e-74 282.0 163 83.4
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 4.5e-73 278.5 222 70.3
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 7.7e-73 277.7 176 79.0
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 5.0e-72 275.0 173 78.0
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.4e-71 273.5 172 77.3
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.2e-70 270.4 169 78.1
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 2.1e-70 269.6 221 66.1
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 3.6e-70 268.9 169 76.3
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 7.9e-70 267.7 221 67.4
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 5.3e-58 228.4 227 55.1
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 1.1e-47 194.1 190 55.3
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 8.0e-46 188.0 171 57.3
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 2.3e-45 186.4 127 74.0
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 2.0e-44 183.3 141 75.2
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 1.6e-41 173.7 150 56.7
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 3.3e-31 139.4 104 72.1
Nitab4.5_0007144g0010 Nicotiana tabacum HOM05D005229 ORTHO05D006378 6.4e-19 98.6 58 91.4
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 6.4e-19 98.6 57 89.5
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.6e-15 85.5 59 69.5
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 5.6e-15 85.5 59 69.5
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 6.6e-08 62.0 102 40.2


User provided reference genes

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