Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g033540 Solanum pennellii HOM05D005995 ORTHO05D007362 2.0e-92 342.4 177 100.0
PGSC0003DMG400030447 Solanum tuberosum HOM05D005995 ORTHO05D007362 2.0e-92 342.4 177 100.0
Solyc06g082160.4 Solanum lycopersicum HOM05D005995 ORTHO05D007362 2.9e-91 338.6 177 98.9
CAN.G1095.10 Capsicum annuum HOM05D005995 ORTHO05D007362 1.6e-84 316.2 177 91.0
Nitab4.5_0013485g0010 Nicotiana tabacum HOM05D005995 ORTHO05D007362 2.1e-81 305.8 177 88.1
Peaxi162Scf00540g00015 Petunia axillaris HOM05D005995 ORTHO05D007362 1.1e-74 283.5 177 83.1
COL.COLO4_11080 Corchorus olitorius HOM05D005995 ORTHO05D007362 8.9e-72 273.9 175 80.0
Thecc.09G353200 Theobroma cacao HOM05D005995 ORTHO05D007362 2.2e-70 269.2 176 80.7
Nitab4.5_0002043g0030 Nicotiana tabacum HOM05D005995 ORTHO05D007362 4.9e-70 268.1 177 79.1
CSS0037016 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 1.9e-69 266.2 176 79.5
CSS0047754 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 1.9e-69 266.2 176 79.5
Cpa.g.sc2.418 Carica papaya HOM05D005995 ORTHO05D007362 1.9e-69 266.2 177 78.5
Duzib170G0863 Durio zibethinus HOM05D005995 ORTHO05D007362 3.5e-68 261.9 175 78.9
CiPaw.14G056700 Carya illinoinensis HOM05D005995 ORTHO05D007362 4.6e-68 261.5 177 77.4
QL01p039263 Quercus lobata HOM05D005995 ORTHO05D007362 1.0e-67 260.4 176 76.1
GSVIVG01024692001 Vitis vinifera HOM05D005995 ORTHO05D007362 1.1e-66 256.9 176 77.3
Manes.17G003200 Manihot esculenta HOM05D005995 ORTHO05D007362 1.5e-66 256.5 177 76.8
TAR131G0002 Trochodendron aralioides HOM05D005995 ORTHO05D007362 1.9e-66 256.1 178 76.4
TAR623G0738 Trochodendron aralioides HOM05D005995 ORTHO05D007362 1.9e-66 256.1 178 76.4
Ciclev10029374m.g Citrus clementina HOM05D005995 ORTHO05D007362 4.3e-66 255.0 180 76.7
FAN25G2223 Fragaria x ananassa HOM05D005995 ORTHO05D007362 9.5e-66 253.8 178 75.8
FAN21G0787 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.2e-65 253.4 179 75.4
Potri.001G279700 Populus trichocarpa HOM05D005995 ORTHO05D007362 1.2e-65 253.4 176 77.3
Cc01_g14560 Coffea canephora HOM05D005995 ORTHO05D007362 2.8e-65 252.3 177 74.6
Hund06617 Selenicereus undatus HOM05D005995 ORTHO05D007362 4.7e-65 251.5 176 74.4
Rhsim13G0066700 Rhododendron simsii HOM05D005995 ORTHO05D007362 6.2e-65 251.1 164 79.3
arahy.Tifrunner.gnm1.ann1.SCP5PP Arachis hypogaea HOM05D005995 ORTHO05D007362 8.0e-65 250.8 182 73.6
Nn2g14523 Nelumbo nucifera HOM05D005995 ORTHO05D007362 8.0e-65 250.8 177 74.0
FAN16G3099 Fragaria x ananassa HOM05D005995 ORTHO05D007362 2.3e-64 249.2 179 74.9
Haze_24375 Corylus avellana HOM05D005995 ORTHO05D007362 3.1e-64 248.8 177 75.1
Aqoxy4G02443 Aquilegia oxysepala HOM05D005995 ORTHO05D007362 5.2e-64 248.1 177 73.4
Duzib168G2258 Durio zibethinus HOM05D005995 ORTHO05D007362 1.5e-63 246.5 176 75.6
Sabra09G0056500 Salix brachista HOM05D005995 ORTHO05D007362 1.5e-63 246.5 177 74.0
CiPaw.13G073700 Carya illinoinensis HOM05D005995 ORTHO05D007362 4.4e-63 245.0 167 73.7
Phvul.006G070800 Phaseolus vulgaris HOM05D005995 ORTHO05D007362 5.8e-63 244.6 178 74.2
VMungo0540G0986 Vigna mungo HOM05D005995 ORTHO05D007362 7.5e-63 244.2 179 74.3
Actinidia23218 Actinidia chinensis HOM05D005995 ORTHO05D007362 9.8e-63 243.8 177 73.4
Glyma.11G168600 Glycine max HOM05D005995 ORTHO05D007362 9.8e-63 243.8 180 74.4
Potri.009G074400 Populus trichocarpa HOM05D005995 ORTHO05D007362 9.8e-63 243.8 177 73.4
FvH4_3g39150 Fragaria vesca HOM05D005995 ORTHO05D007362 2.9e-62 242.3 179 73.2
FAN11G1452 Fragaria x ananassa HOM05D005995 ORTHO05D007362 4.9e-62 241.5 179 73.2
vmacro02942 Vaccinium macrocarpon HOM05D005995 ORTHO05D007362 4.9e-62 241.5 164 75.6
RcHm_v2.0_Chr5g0070551 Rosa chinensis HOM05D005995 ORTHO05D007362 8.3e-62 240.7 179 72.6
EL10Ac3g05994 Beta vulgaris HOM05D005995 ORTHO05D007362 1.4e-61 240.0 178 71.3
MSTRG.10034 Avicennia marina HOM05D005995 ORTHO05D007362 4.1e-61 238.4 171 73.1
AUR62023851 Chenopodium quinoa HOM05D005995 ORTHO05D007362 7.1e-61 237.7 178 70.2
Ca_14969_v3 Cicer arietinum L. HOM05D005995 ORTHO05D007362 7.1e-61 237.7 175 73.1
Dinv09649 Davidia involucrata HOM05D002227 ORTHO05D002337 9.2e-61 237.3 177 72.9
Gohir.A13G233500 Gossypium hirsutum HOM05D005995 ORTHO05D007362 3.5e-60 235.3 152 81.6
MD03G1063100 Malus domestica HOM05D005995 ORTHO05D007362 3.5e-60 235.3 180 72.2
Oeu031050.1 Olea europaea HOM05D005995 ORTHO05D007362 4.6e-60 235.0 175 73.1
Cfa011735 Carpinus fangiana HOM05D005995 ORTHO05D007362 6.0e-60 234.6 177 72.3
SGA_v2.0_scaffold371G50155 Striga asiatica HOM05D005995 ORTHO05D007362 6.0e-60 234.6 167 70.7
Sed0015986 Sechium edule HOM05D005995 ORTHO05D007362 7.8e-60 234.2 177 69.5
Medtr3g465040 Medicago truncatula HOM05D005995 ORTHO05D007362 1.3e-59 233.4 177 70.6
MELO3C020526.2 Cucumis melo HOM05D005995 ORTHO05D007362 2.3e-59 232.6 177 69.5
Glyma.18G060000 Glycine max HOM05D005995 ORTHO05D007362 2.3e-59 232.6 175 72.6
CsaV3_1G036430 Cucumis sativus L. HOM05D005995 ORTHO05D007362 3.0e-59 232.3 177 68.9
DCAR_015647 Daucus carota HOM05D005995 ORTHO05D007362 3.9e-59 231.9 179 70.4
Lj6g0019722 Lotus japonicus HOM05D005995 ORTHO05D007362 6.6e-59 231.1 165 75.2
arahy.Tifrunner.gnm1.ann1.6174C5 Arachis hypogaea HOM05D005995 ORTHO05D007362 8.6e-59 230.7 169 72.8
TAR633G2447 Trochodendron aralioides HOM05D005995 ORTHO05D007362 1.1e-58 230.3 179 69.3
ClCG03G000500 Citrullus lanatus HOM05D005995 ORTHO05D007362 1.5e-58 229.9 177 68.4
PGR031G2980 Punica granatum HOM05D005995 ORTHO05D007362 1.5e-58 229.9 179 69.8
CANSAT54G2854 Cannabis sativa HOM05D005995 ORTHO05D007362 1.9e-58 229.6 175 70.9
Psat0s2070g0120 Pisum sativum HOM05D005995 ORTHO05D007362 1.9e-58 229.6 177 69.5
Eucgr.B02232 Eucalyptus grandis HOM05D005995 ORTHO05D007362 3.3e-58 228.8 147 81.6
ATR0681G053 Amborella trichopoda HOM05D005995 ORTHO05D007362 1.2e-57 226.9 181 69.1
Lalb_Chr20g0114841 Lupinus albus HOM05D005995 ORTHO05D007362 4.7e-57 224.9 180 68.9
Gohir.D13G239100 Gossypium hirsutum HOM05D005995 ORTHO05D007362 2.3e-56 222.6 152 78.3
Gorai.013G270000 Gossypium raimondii HOM05D005995 ORTHO05D007362 2.3e-56 222.6 152 78.3
TPR.G32896 Trifolium pratense HOM05D005995 ORTHO05D007362 6.8e-56 221.1 178 70.2
AL8G34810 Arabidopsis lyrata HOM05D005995 ORTHO05D007362 1.5e-55 219.9 176 65.3
Sp6g20270 Schrenkiella parvula HOM05D005995 ORTHO05D007362 2.6e-55 219.2 176 64.2
THA.LOC104799390 Tarenaya hassleriana HOM05D005995 ORTHO05D007362 3.4e-55 218.8 164 68.9
Actinidia02782 Actinidia chinensis HOM05D005995 ORTHO05D007362 5.8e-55 218.0 132 83.3
Sabra16G0173300 Salix brachista HOM05D005995 ORTHO05D007362 1.7e-54 216.5 206 61.2
Atru.chr3.4142 Acer truncatum HOM05D005995 ORTHO05D007362 2.2e-54 216.1 237 54.4
AT5G58575 Arabidopsis thaliana HOM05D005995 ORTHO05D007362 3.7e-54 215.3 176 63.6
CDE10G1344 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 4.9e-54 214.9 165 67.9
Lalb_Chr18g0051191 Lupinus albus HOM05D005995 ORTHO05D007362 8.3e-54 214.2 179 68.2
Prupe.6G053100 Prunus persica HOM05D005995 ORTHO05D007362 8.3e-54 214.2 179 65.4
Carub.0008s1918 Capsella rubella HOM05D005995 ORTHO05D007362 1.4e-53 213.4 176 63.1
Migut.N00147 Erythranthe guttata HOM05D005995 ORTHO05D007362 2.4e-53 212.6 176 64.2
PSO017G3188 Papaver somniferum HOM05D005995 ORTHO05D007362 1.2e-52 210.3 137 78.1
CARHR272410 Cardamine hirsuta HOM05D005995 ORTHO05D007362 1.6e-52 209.9 177 62.1
Thhalv10014805m.g Eutrema salsugineum HOM05D005995 ORTHO05D007362 1.3e-51 206.8 176 63.1
PSO170G4292 Papaver somniferum HOM05D005995 ORTHO05D007362 1.3e-51 206.8 137 76.6
ECA248G1932 Erigeron canadensis HOM05D005995 ORTHO05D007362 3.9e-51 205.3 138 77.5
MD11G1066600 Malus domestica HOM05D005995 ORTHO05D007362 6.6e-51 204.5 180 64.4
Lsat_1_v5_gn_5_173181 Lactuca sativa HOM05D005995 ORTHO05D007362 2.5e-50 202.6 125 80.0
Sc06g0010410 Simmondsia chinensis HOM05D005995 ORTHO05D007362 3.3e-50 202.2 137 76.6
HanXRQChr11g0334701 Helianthus annuus HOM05D005995 ORTHO05D007362 7.3e-50 201.1 134 76.1
TWI79G0924 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 9.6e-50 200.7 183 61.7
MD11G1066800 Malus domestica HOM05D005995 ORTHO05D007362 1.6e-49 199.9 157 68.2
unitig_62.g23487 Utricularia gibba HOM05D005995 ORTHO05D007362 2.8e-49 199.1 175 62.9
CDE10G0962 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 6.2e-49 198.0 164 64.6
BcaC01g06637 Brassica carinata HOM05D005995 ORTHO05D007362 8.1e-49 197.6 151 68.9
A03p12120 Brassica napus HOM05D005995 ORTHO05D007362 1.8e-48 196.4 151 68.2
BolC3t13867H Brassica oleracea HOM05D005995 ORTHO05D007362 2.4e-48 196.1 151 68.2
BcaB01g04505 Brassica carinata HOM05D005995 ORTHO05D007362 3.1e-48 195.7 151 66.9
BraA03t10524Z Brassica rapa HOM05D005995 ORTHO05D007362 4.0e-48 195.3 151 68.2
Aa31LG11G350 Aethionema arabicum HOM05D005995 ORTHO05D007362 1.5e-47 193.4 148 68.2
MBI03_g03955_MAGBIO Magnolia biondii HOM05D005995 ORTHO05D007362 2.0e-47 193.0 122 78.7
HPP92_012020 Vanilla planifolia HOM05D005995 ORTHO05D007362 2.6e-47 192.6 164 67.1
Lj1P130T21 Lonicera japonica HOM05D005995 ORTHO05D007362 9.3e-45 184.1 106 83.0
BcaNung06849 Brassica carinata HOM05D002227 ORTHO05D007362 1.6e-44 183.3 151 64.2
MD11G1152800 Malus domestica HOM05D005995 ORTHO05D007362 5.1e-43 178.3 113 77.0
Sed0014404 Sechium edule HOM05D005995 ORTHO05D007362 5.6e-42 174.9 162 61.1
AUR62002337 Chenopodium quinoa HOM05D005995 ORTHO05D007362 9.0e-40 167.5 123 69.9
TWI31G1135 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 2.6e-39 166.0 143 65.0
SEGI_16655 Sequoiadendron giganteum HOM05D005995 ORTHO05D007362 6.4e-38 161.4 156 59.0
Os05g0351500 Oryza sativa ssp. japonica HOM05D005995 ORTHO05D007362 5.4e-37 158.3 186 51.1
Gohir.A05G107700 Gossypium hirsutum HOM05D005995 ORTHO05D007362 3.5e-36 155.6 176 53.4
Zm00001eb286290 Zea mays HOM05D005995 ORTHO05D007362 1.3e-35 153.7 187 50.8
Mapoly0008s0254 Marchantia polymorpha HOM05D005995 ORTHO05D007362 6.6e-35 151.4 174 51.7
Gohir.D05G107900 Gossypium hirsutum HOM05D005995 ORTHO05D007362 4.8e-33 145.2 176 51.7
C03p14210 Brassica napus HOM05D005995 ORTHO05D007362 1.1e-32 144.1 117 62.4
Pp3c7_14690 Physcomitrium patens HOM05D005995 ORTHO05D007362 1.5e-31 140.2 156 55.1
SMO358G0374 Selaginella moellendorffii HOM05D005995 ORTHO05D007362 1.9e-26 123.2 99 61.6
BcaC01g06639 Brassica carinata HOM05D005995 ORTHO05D007362 3.3e-26 122.5 120 55.8
AagrBONN_evm.TU.Sc2ySwM_344.2127 Anthoceros agrestis HOM05D005995 ORTHO05D007362 5.6e-26 121.7 98 62.2
Pp3c11_11530 Physcomitrium patens HOM05D001687 ORTHO05D001608 2.8e-25 119.4 139 51.1
Gorai.009G112000 Gossypium raimondii HOM05D005995 ORTHO05D007362 2.0e-23 113.2 122 54.1
MD11G1153100 Malus domestica HOM05D005995 ORTHO05D007362 5.8e-23 111.7 80 72.5
Actinidia32626 Actinidia chinensis HOM05D005995 ORTHO05D007362 5.5e-21 105.1 72 76.4
HPP92_013780 Vanilla planifolia HOM05D005995 ORTHO05D007362 7.9e-20 101.3 85 62.4
CBR_g49952 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-17 93.6 138 39.9
MD11G1071300 Malus domestica HOM05D005995 ORTHO05D007362 4.5e-15 85.5 81 59.3
Cre17.g719550 Chlamydomonas reinhardtii HOM05D005995 ORTHO05D007362 3.5e-12 75.9 54 63.0
Pp3c4_14820 Physcomitrium patens HOM05D005995 ORTHO05D311899 1.8e-08 63.5 118 39.0
Medtr6g460490 Medicago truncatula HOM05D005995 ORTHO05D007362 1.5e-07 60.5 51 60.8
Nn2g14856 Nelumbo nucifera HOM05D005995 ORTHO05D007362 2.0e-07 60.1 60 56.7
MCO04G081 Micromonas commoda HOM05D005995 ORTHO05D007362 2.6e-07 59.7 124 36.3


User provided reference genes

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