Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g022080 Solanum pennellii HOM05D001162 ORTHO05D001218 4.1e-44 181.0 92 100.0
Nitab4.5_0008454g0040 Nicotiana tabacum HOM05D001162 ORTHO05D001218 1.3e-18 96.3 72 73.6
Nitab4.5_0000255g0190 Nicotiana tabacum HOM05D001162 ORTHO05D001218 7.2e-17 90.5 73 71.2
Dinv30379 Davidia involucrata HOM05D001162 ORTHO05D001218 1.5e-14 82.8 73 63.0
MSTRG.4768 Avicennia marina HOM05D001162 ORTHO05D001218 2.6e-14 82.0 73 61.6
Cc04_g01950 Coffea canephora HOM05D001162 ORTHO05D001218 3.4e-14 81.6 73 64.4
Peaxi162Scf00207g01050 Petunia axillaris HOM05D001162 ORTHO05D001218 4.4e-14 81.3 73 69.9
Peaxi162Scf00038g01521 Petunia axillaris HOM05D001162 ORTHO05D001218 5.7e-14 80.9 72 63.9
Dinv37914 Davidia involucrata HOM05D001162 ORTHO05D001218 7.5e-14 80.5 73 61.6
SalBow7G4614 Salvia bowleyana HOM05D001162 ORTHO05D001218 7.5e-14 80.5 73 58.9
Hma1.2p1_0388F.1_g142340 Hydrangea macrophylla HOM05D001162 ORTHO05D001218 9.8e-14 80.1 73 63.0
Solyc03g121590.3 Solanum lycopersicum HOM05D001162 ORTHO05D001218 3.7e-13 78.2 72 59.7
Sopen03g040400 Solanum pennellii HOM05D001162 ORTHO05D001218 3.7e-13 78.2 72 59.7
Haze_15950 Corylus avellana HOM05D001162 ORTHO05D001218 1.1e-12 76.6 69 58.0
Thecc.06G113500 Theobroma cacao HOM05D001162 ORTHO05D001218 1.8e-12 75.9 73 60.3
MSTRG.22586 Avicennia marina HOM05D001162 ORTHO05D001218 3.1e-12 75.1 73 57.5
Nitab4.5_0000549g0060 Nicotiana tabacum HOM05D001162 ORTHO05D001218 3.1e-12 75.1 48 77.1
vmacro18785 Vaccinium macrocarpon HOM05D001162 ORTHO05D001218 3.1e-12 75.1 73 60.3
CAN.G1389.20 Capsicum annuum HOM05D001162 ORTHO05D001218 4.1e-12 74.7 74 58.1
Rhsim08G0233300 Rhododendron simsii HOM05D001162 ORTHO05D001218 4.1e-12 74.7 73 60.3
CiPaw.02G140100 Carya illinoinensis HOM05D001162 ORTHO05D001218 7.0e-12 73.9 69 58.0
Sc04g0002560 Simmondsia chinensis HOM05D001162 ORTHO05D001218 7.0e-12 73.9 74 54.1
CSS0046354 Camellia sinensis var. sinensis HOM05D001162 ORTHO05D001218 1.6e-11 72.8 73 57.5
Migut.D00969 Erythranthe guttata HOM05D001162 ORTHO05D001218 2.0e-11 72.4 74 55.4
Duzib160G0505 Durio zibethinus HOM05D001162 ORTHO05D001218 4.5e-11 71.2 72 52.8
Nn8g38861 Nelumbo nucifera HOM05D001162 ORTHO05D001218 4.5e-11 71.2 73 57.5
SGA_v2.0_scaffold68G22926 Striga asiatica HOM05D001162 ORTHO05D001218 4.5e-11 71.2 74 55.4
FAN05G5618 Fragaria x ananassa HOM05D001162 ORTHO05D001218 5.9e-11 70.9 70 52.9
FvH4_6g33350 Fragaria vesca HOM05D001162 ORTHO05D001218 7.8e-11 70.5 70 52.9
FAN02G3396 Fragaria x ananassa HOM05D001162 ORTHO05D001218 7.8e-11 70.5 70 52.9
MBI01_g09939_MAGBIO Magnolia biondii HOM05D001162 ORTHO05D001218 1.3e-10 69.7 48 68.8
DCAR_026383 Daucus carota HOM05D001162 ORTHO05D001218 1.7e-10 69.3 73 60.3
FAN14G5741 Fragaria x ananassa HOM05D001162 ORTHO05D001218 1.7e-10 69.3 70 52.9
MSTRG.9497 Avicennia marina HOM05D001162 ORTHO05D001218 2.3e-10 68.9 74 52.7
FAN09G2603 Fragaria x ananassa HOM05D001162 ORTHO05D001218 2.3e-10 68.9 69 52.2
TAR626G0565 Trochodendron aralioides HOM05D001162 ORTHO05D001218 2.9e-10 68.6 66 57.6
GSVIVG01016855001 Vitis vinifera HOM05D001162 ORTHO05D001218 2.9e-10 68.6 70 52.9
Actinidia21760 Actinidia chinensis HOM05D001162 ORTHO05D001218 5.0e-10 67.8 69 53.6
Duzib192G0337 Durio zibethinus HOM05D001162 ORTHO05D001218 5.0e-10 67.8 72 55.6
Lj5C45T5 Lonicera japonica HOM05D001162 ORTHO05D001218 5.0e-10 67.8 74 58.1
MD09G1193400 Malus domestica HOM05D001162 ORTHO05D001218 5.0e-10 67.8 69 47.8
HPP92_006468 Vanilla planifolia HOM05D001162 ORTHO05D001218 5.0e-10 67.8 71 56.3
PGR102G2918 Punica granatum HOM05D001162 ORTHO05D001218 6.6e-10 67.4 72 52.8
Duzib235G0695 Durio zibethinus HOM05D001162 ORTHO05D001218 8.6e-10 67.0 72 51.4
Oeu002505.2 Olea europaea HOM05D001162 ORTHO05D001218 1.1e-09 66.6 69 52.2
Oeu011893.1 Olea europaea HOM05D001162 ORTHO05D001218 1.1e-09 66.6 69 55.1
CANSAT56G3796 Cannabis sativa HOM05D001162 ORTHO05D001218 1.5e-09 66.2 63 50.8
Sc12g0006290 Simmondsia chinensis HOM05D001162 ORTHO05D001218 1.5e-09 66.2 73 50.7
Eucgr.J02860 Eucalyptus grandis HOM05D001162 ORTHO05D001218 2.5e-09 65.5 72 51.4
RcHm_v2.0_Chr2g0143201 Rosa chinensis HOM05D001162 ORTHO05D001218 2.5e-09 65.5 70 50.0
COL.COLO4_38600 Corchorus olitorius HOM05D001162 ORTHO05D001218 3.3e-09 65.1 61 57.4
Gohir.A02G114900 Gossypium hirsutum HOM05D001162 ORTHO05D001218 3.3e-09 65.1 69 55.1
Gohir.D03G055900 Gossypium hirsutum HOM05D001162 ORTHO05D001218 3.3e-09 65.1 69 55.1
Lj9A519T84 Lonicera japonica HOM05D001162 ORTHO05D001218 3.3e-09 65.1 77 53.2
Nn6g35482 Nelumbo nucifera HOM05D001162 ORTHO05D001218 3.3e-09 65.1 73 52.1
Prupe.3G049800 Prunus persica HOM05D001162 ORTHO05D001218 3.3e-09 65.1 69 46.4
Manes.04G139600 Manihot esculenta HOM05D001162 ORTHO05D001218 4.3e-09 64.7 72 47.2
Manes.11G026500 Manihot esculenta HOM05D001162 ORTHO05D001218 4.3e-09 64.7 75 52.0
Potri.001G201000 Populus trichocarpa HOM05D001162 ORTHO05D001218 4.3e-09 64.7 73 53.4
Ciclev10024908m.g Citrus clementina HOM05D001162 ORTHO05D001218 5.6e-09 64.3 79 55.7
Oeu026750.1 Olea europaea HOM05D001162 ORTHO05D001218 5.6e-09 64.3 69 53.6
Sabra01G0157000 Salix brachista HOM05D001162 ORTHO05D001218 5.6e-09 64.3 48 60.4
SGA_v2.0_scaffold71G23783 Striga asiatica HOM05D001162 ORTHO05D001218 7.3e-09 63.9 71 52.1
Atru.chr1.3780 Acer truncatum HOM05D001162 ORTHO05D001218 1.2e-08 63.2 72 50.0
TAR383G0671 Trochodendron aralioides HOM05D001162 ORTHO05D001218 1.2e-08 63.2 73 52.1
Glyma.07G010200 Glycine max HOM05D001162 ORTHO05D001218 2.1e-08 62.4 73 47.9
CiPaw.01G225100 Carya illinoinensis HOM05D001162 ORTHO05D001218 2.8e-08 62.0 47 66.0
Glyma.08G193200 Glycine max HOM05D001162 ORTHO05D001218 2.8e-08 62.0 73 47.9
Cpa.g.sc131.51 Carica papaya HOM05D001162 ORTHO05D001218 3.6e-08 61.6 67 50.7
ClCG09G000670 Citrullus lanatus HOM05D001162 ORTHO05D001218 3.6e-08 61.6 70 52.9
Glyma.15G024100 Glycine max HOM05D001162 ORTHO05D001218 4.7e-08 61.2 73 47.9
Sed0018575 Sechium edule HOM05D001162 ORTHO05D001218 4.7e-08 61.2 74 51.4
Hund20855 Selenicereus undatus HOM05D001162 ORTHO05D001218 6.1e-08 60.8 73 47.9
MBI11_g12664_MAGBIO Magnolia biondii HOM05D001162 ORTHO05D001218 8.0e-08 60.5 80 48.8
PGR102G2653 Punica granatum HOM05D001162 ORTHO05D001218 8.0e-08 60.5 69 46.4
Solyc12g044900.3 Solanum lycopersicum HOM05D001162 ORTHO05D001218 8.0e-08 60.5 43 67.4
Sopen12g023260 Solanum pennellii HOM05D001162 ORTHO05D001218 8.0e-08 60.5 43 67.4
Peaxi162Scf00177g00311 Petunia axillaris HOM05D001162 ORTHO05D001218 1.4e-07 59.7 65 55.4
MELO3C024392.2 Cucumis melo HOM05D001162 ORTHO05D001218 2.3e-07 58.9 71 49.3
Gohir.A09G080300 Gossypium hirsutum HOM05D001162 ORTHO05D001218 2.3e-07 58.9 67 43.3
Nitab4.5_0007376g0020 Nicotiana tabacum HOM05D001162 ORTHO05D001218 2.3e-07 58.9 63 58.7
Potri.003G038900 Populus trichocarpa HOM05D001162 ORTHO05D001218 2.3e-07 58.9 47 59.6
PGSC0003DMG400033645 Solanum tuberosum HOM05D001162 ORTHO05D001218 2.3e-07 58.9 42 66.7
CsaV3_7G034810 Cucumis sativus L. HOM05D001162 ORTHO05D001218 3.0e-07 58.5 71 49.3
Gohir.D09G080300 Gossypium hirsutum HOM05D001162 ORTHO05D001218 3.0e-07 58.5 67 43.3
Gorai.003G058700 Gossypium raimondii HOM05D001162 ORTHO05D001218 3.0e-07 58.5 53 56.6
ATR0749G074 Amborella trichopoda HOM05D001162 ORTHO05D001218 4.0e-07 58.2 69 49.3
Phvul.010G139100 Phaseolus vulgaris HOM05D001162 ORTHO05D001218 4.0e-07 58.2 73 42.5
VMungo0331G0797 Vigna mungo HOM05D001162 ORTHO05D001218 4.0e-07 58.2 72 45.8
ECA232G3404 Erigeron canadensis HOM05D001162 ORTHO05D001218 5.2e-07 57.8 75 52.0
Gorai.006G095800 Gossypium raimondii HOM05D001162 ORTHO05D001218 5.2e-07 57.8 67 43.3
HanXRQChr02g0031681 Helianthus annuus HOM05D001162 ORTHO05D001218 5.2e-07 57.8 72 50.0
Os01g0575000 Oryza sativa ssp. japonica HOM05D001162 ORTHO05D001218 5.2e-07 57.8 71 50.7
ECA247G3617 Erigeron canadensis HOM05D001162 ORTHO05D001218 6.8e-07 57.4 72 50.0
PSO210G5214 Papaver somniferum HOM05D001162 ORTHO05D001218 6.8e-07 57.4 69 49.3
CAN.G12.13 Capsicum annuum HOM05D001162 ORTHO05D001218 8.9e-07 57.0 43 62.8
Nitab4.5_0001295g0120 Nicotiana tabacum HOM05D001162 ORTHO05D001218 8.9e-07 57.0 63 58.7
AUR62038134 Chenopodium quinoa HOM05D001162 ORTHO05D001218 1.2e-06 56.6 73 49.3
Hma1.2p1_0496F.1_g165790 Hydrangea macrophylla HOM05D001162 ORTHO05D001218 1.2e-06 56.6 70 50.0
Hma1.2p1_2045F.1_g312371 Hydrangea macrophylla HOM05D001162 ORTHO05D001218 1.2e-06 56.6 70 50.0
PSO210G6805 Papaver somniferum HOM05D001162 ORTHO05D001218 1.2e-06 56.6 69 47.8
Aqoxy6G01678 Aquilegia oxysepala HOM05D001162 ORTHO05D001218 1.5e-06 56.2 61 45.9
CSS0049028 Camellia sinensis var. sinensis HOM05D001162 ORTHO05D001218 1.5e-06 56.2 74 50.0
HanXRQChr05g0140151 Helianthus annuus HOM05D001162 ORTHO05D001218 1.5e-06 56.2 72 50.0
MD17G1174200 Malus domestica HOM05D001162 ORTHO05D001218 2.0e-06 55.8 57 45.6
Oeu039958.1 Olea europaea HOM05D001162 ORTHO05D001218 2.0e-06 55.8 69 47.8
TWI75G1499 Tripterygium wilfordii HOM05D001162 ORTHO05D001218 2.0e-06 55.8 63 50.8
arahy.Tifrunner.gnm1.ann1.YL4R3A Arachis hypogaea HOM05D001162 ORTHO05D001218 2.6e-06 55.5 73 50.7
Gohir.D05G137700 Gossypium hirsutum HOM05D001162 ORTHO05D001218 2.6e-06 55.5 73 49.3
Gorai.009G142100 Gossypium raimondii HOM05D001162 ORTHO05D001218 2.6e-06 55.5 73 49.3
Lj3g0018514 Lotus japonicus HOM05D001162 ORTHO05D001218 3.4e-06 55.1 76 43.4
AUR62009822 Chenopodium quinoa HOM05D001162 ORTHO05D001218 4.4e-06 54.7 73 47.9
Lj3g0008624 Lotus japonicus HOM05D001162 ORTHO05D001218 4.4e-06 54.7 70 41.4
Nn7g38014 Nelumbo nucifera HOM05D001162 ORTHO05D001218 4.4e-06 54.7 79 46.8
Sabra03G0024800 Salix brachista HOM05D001162 ORTHO05D001218 4.4e-06 54.7 37 64.9
arahy.Tifrunner.gnm1.ann1.F47PG2 Arachis hypogaea HOM05D001162 ORTHO05D001218 7.5e-06 53.9 73 49.3
EL10Ac4g09085 Beta vulgaris HOM05D001162 ORTHO05D001218 9.8e-06 53.5 73 45.2


User provided reference genes

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