Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g008020.3 Solanum lycopersicum HOM05D006778 ORTHO05D008341 6.5e-62 240.7 139 88.5
Sopen06g002860 Solanum pennellii HOM05D006778 ORTHO05D008341 6.5e-62 240.7 139 100.0
CAN.G941.43 Capsicum annuum HOM05D006778 ORTHO05D008341 5.6e-53 211.1 138 78.3
Nitab4.5_0003180g0010 Nicotiana tabacum HOM05D006778 ORTHO05D008341 4.3e-45 184.9 138 68.1
Nitab4.5_0001740g0070 Nicotiana tabacum HOM05D006778 ORTHO05D008341 1.2e-42 176.8 138 67.4
PGSC0003DMG400014691 Solanum tuberosum HOM05D006778 ORTHO05D008341 5.8e-42 174.5 135 76.3
Actinidia37573 Actinidia chinensis HOM05D006778 ORTHO05D008341 8.6e-38 160.6 138 58.7
Cc01_g17420 Coffea canephora HOM05D006778 ORTHO05D008341 1.5e-37 159.8 137 58.4
Rhsim13G0042100 Rhododendron simsii HOM05D006778 ORTHO05D008341 4.7e-36 154.8 135 54.8
Glyma.10G042900 Glycine max HOM05D006778 ORTHO05D008341 6.8e-35 151.0 138 53.6
SGA_v2.0_scaffold8G04666 Striga asiatica HOM05D006778 ORTHO05D008341 1.2e-34 150.2 137 54.0
ECA247G0226 Erigeron canadensis HOM05D000070 ORTHO05D003190 5.8e-34 147.9 135 53.3
CiPaw.03G152900 Carya illinoinensis HOM05D006778 ORTHO05D008341 6.4e-33 144.4 138 51.4
Lj3g0024250 Lotus japonicus HOM05D006778 ORTHO05D008341 8.3e-33 144.1 135 51.9
Manes.12G043800 Manihot esculenta HOM05D006778 ORTHO05D008341 1.1e-32 143.7 137 52.6
TAR362G0656 Trochodendron aralioides HOM05D006778 ORTHO05D008341 1.9e-32 142.9 133 54.1
GSVIVG01028519001 Vitis vinifera HOM05D006778 ORTHO05D008341 3.2e-32 142.1 138 54.3
DCAR_012626 Daucus carota HOM05D006778 ORTHO05D008341 5.4e-32 141.4 142 50.0
Migut.D00505 Erythranthe guttata HOM05D006778 ORTHO05D008341 5.4e-32 141.4 137 50.4
Cfa002523 Carpinus fangiana HOM05D006778 ORTHO05D008341 7.1e-32 141.0 134 53.0
Glyma.13G130200 Glycine max HOM05D006778 ORTHO05D008341 7.1e-32 141.0 138 48.6
PGR044G1830 Punica granatum HOM05D006778 ORTHO05D008341 2.7e-31 139.0 136 50.0
vmacro02733 Vaccinium macrocarpon HOM05D006778 ORTHO05D008341 3.5e-31 138.7 164 47.6
Phvul.007G156300 Phaseolus vulgaris HOM05D006778 ORTHO05D008341 4.6e-31 138.3 138 50.0
Nn1g03098 Nelumbo nucifera HOM05D006778 ORTHO05D008341 1.3e-30 136.7 152 46.7
RcHm_v2.0_Chr6g0285481 Rosa chinensis HOM05D006778 ORTHO05D008341 1.3e-30 136.7 142 50.7
Psat6g064720 Pisum sativum HOM05D006778 ORTHO05D008341 1.7e-30 136.3 153 46.4
QL07p037469 Quercus lobata HOM05D006778 ORTHO05D008341 3.0e-30 135.6 166 45.8
CiPaw.04G108200 Carya illinoinensis HOM05D006778 ORTHO05D008341 3.9e-30 135.2 167 43.1
FAN15G2222 Fragaria x ananassa HOM05D006778 ORTHO05D008341 3.9e-30 135.2 138 50.0
Lj5g0022938 Lotus japonicus HOM05D006778 ORTHO05D008341 3.9e-30 135.2 138 50.0
Prupe.8G209000 Prunus persica HOM05D006778 ORTHO05D008341 3.9e-30 135.2 137 48.9
arahy.Tifrunner.gnm1.ann1.PE83GC Arachis hypogaea HOM05D006778 ORTHO05D008341 5.1e-30 134.8 137 47.4
THA.LOC104820057 Tarenaya hassleriana HOM05D006778 ORTHO05D008341 6.6e-30 134.4 136 47.8
FvH4_2g19780 Fragaria vesca HOM05D006778 ORTHO05D008341 8.6e-30 134.0 145 47.6
Medtr1g069150 Medicago truncatula HOM05D006778 ORTHO05D008341 8.6e-30 134.0 154 47.4
ClCG07G001620 Citrullus lanatus HOM05D006778 ORTHO05D008341 1.9e-29 132.9 138 52.9
Sed0012724 Sechium edule HOM05D006778 ORTHO05D008341 1.9e-29 132.9 137 49.6
arahy.Tifrunner.gnm1.ann1.01AYHN Arachis hypogaea HOM05D006778 ORTHO05D008341 2.5e-29 132.5 137 46.7
MELO3C026499.2 Cucumis melo HOM05D006778 ORTHO05D008341 3.3e-29 132.1 139 51.8
Lalb_Chr21g0314231 Lupinus albus HOM05D006778 ORTHO05D008341 5.6e-29 131.3 140 47.9
CsaV3_6G036140 Cucumis sativus L. HOM05D006778 ORTHO05D008341 9.5e-29 130.6 139 51.1
Potri.002G252700 Populus trichocarpa HOM05D006778 ORTHO05D008341 1.6e-28 129.8 138 50.7
Cpa.g.sc8.198 Carica papaya HOM05D006778 ORTHO05D008341 2.8e-28 129.0 133 48.1
MD05G1182200 Malus domestica HOM05D006778 ORTHO05D008341 4.7e-28 128.3 132 49.2
PGR044G0410 Punica granatum HOM05D006778 ORTHO05D008341 8.1e-28 127.5 130 46.9
CANSAT01G2408 Cannabis sativa HOM05D006778 ORTHO05D008341 1.1e-27 127.1 150 48.0
CANSAT01G3118 Cannabis sativa HOM05D006778 ORTHO05D008341 1.1e-27 127.1 150 47.3
Sabra02G0191900 Salix brachista HOM05D006778 ORTHO05D008341 2.3e-27 125.9 138 50.0
Thecc.01G232400 Theobroma cacao HOM05D006778 ORTHO05D008341 2.3e-27 125.9 169 49.7
TPR.G33801 Trifolium pratense HOM05D006778 ORTHO05D008341 1.2e-26 123.6 145 46.2
Duzib133G1327 Durio zibethinus HOM05D006778 ORTHO05D008341 4.4e-26 121.7 168 38.1
Aqoxy2G03836 Aquilegia oxysepala HOM05D006778 ORTHO05D008341 5.8e-26 121.3 133 45.9
EL10Ac7g17819 Beta vulgaris HOM05D006778 ORTHO05D008341 2.2e-25 119.4 140 44.3
FAN24G1005 Fragaria x ananassa HOM05D006778 ORTHO05D008341 1.4e-24 116.7 153 41.8
ATR0787G018 Amborella trichopoda HOM05D006778 ORTHO05D008341 1.9e-24 116.3 138 44.2
BcaC09g51658 Brassica carinata HOM05D006778 ORTHO05D008341 1.9e-24 116.3 152 42.1
AUR62031811 Chenopodium quinoa HOM05D006778 ORTHO05D008341 1.9e-24 116.3 163 46.0
Gohir.D08G211201 Gossypium hirsutum HOM05D006778 ORTHO05D008341 5.4e-24 114.8 155 41.3
Pp3c19_5220 Physcomitrium patens HOM05D006778 ORTHO05D008341 5.4e-24 114.8 139 43.2
BcaNung01362 Brassica carinata HOM05D006778 ORTHO05D008341 9.2e-24 114.0 152 41.4
Dinv19236 Davidia involucrata HOM05D006778 ORTHO05D008341 9.2e-24 114.0 144 43.8
CSS0042066 Camellia sinensis var. sinensis HOM05D006778 ORTHO05D008341 3.5e-23 112.1 155 41.3
Sp7g26820 Schrenkiella parvula HOM05D006778 ORTHO05D008341 3.5e-23 112.1 152 41.4
COL.COLO4_28579 Corchorus olitorius HOM05D006778 ORTHO05D008341 7.8e-23 110.9 155 41.3
CDE06G1811 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 1.3e-22 110.2 150 48.0
Gorai.004G223900 Gossypium raimondii HOM05D006778 ORTHO05D008341 1.7e-22 109.8 169 41.4
Peaxi162Scf00499g00413 Petunia axillaris HOM05D006778 ORTHO05D008341 3.0e-22 109.0 97 64.9
Gohir.A08G193200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 5.1e-22 108.2 164 41.5
Thhalv10026155m.g Eutrema salsugineum HOM05D006778 ORTHO05D008341 6.6e-22 107.8 164 37.8
Mapoly0102s0014 Marchantia polymorpha HOM05D006778 ORTHO05D008341 6.6e-22 107.8 134 40.3
CARHR236610 Cardamine hirsuta HOM05D006778 ORTHO05D008341 1.5e-21 106.7 163 36.8
TWI14G0487 Tripterygium wilfordii HOM05D006778 ORTHO05D008341 3.3e-21 105.5 186 37.1
AT4G28820 Arabidopsis thaliana HOM05D006778 ORTHO05D008341 7.3e-21 104.4 162 38.9
CBR_g29688 Chara braunii HOM05D006778 ORTHO05D008341 7.3e-21 104.4 137 38.7
CDE07G0370 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 2.8e-20 102.4 146 39.0
MSTRG.18371 Avicennia marina HOM05D006778 ORTHO05D008341 3.6e-20 102.1 137 40.9
Carub.0007s1182 Capsella rubella HOM05D006778 ORTHO05D008341 6.2e-20 101.3 167 35.3
HPP92_014070 Vanilla planifolia HOM05D006778 ORTHO05D008341 1.4e-19 100.1 138 39.9
AagrBONN_evm.TU.Sc2ySwM_228.3325 Anthoceros agrestis HOM05D006778 ORTHO05D008341 3.1e-19 99.0 135 41.5
BolC1t01026H Brassica oleracea HOM05D006778 ORTHO05D008341 8.9e-19 97.4 163 37.4
A01p09090 Brassica napus HOM05D006778 ORTHO05D008341 1.5e-18 96.7 163 36.2
Haze_24755 Corylus avellana HOM05D006778 ORTHO05D008341 1.7e-17 93.2 94 44.7
Haze_24757 Corylus avellana HOM05D006778 ORTHO05D008341 1.7e-17 93.2 94 44.7
SMO111G0074 Selaginella moellendorffii HOM05D006778 ORTHO05D008341 1.1e-16 90.5 139 35.3
C01p10640 Brassica napus HOM05D006778 ORTHO05D008341 1.9e-16 89.7 171 35.1
AL7G23670 Arabidopsis lyrata HOM05D006778 ORTHO05D008341 2.4e-16 89.4 189 32.3
Zm00001eb149030 Zea mays HOM05D006778 ORTHO05D008341 9.3e-16 87.4 139 36.0
BolC7t46124H Brassica oleracea HOM05D006778 ORTHO05D008341 2.7e-15 85.9 196 31.6
AagrBONN_evm.TU.Sc2ySwM_368.1574 Anthoceros agrestis HOM05D006778 ORTHO05D008341 4.6e-15 85.1 112 42.0
Hma1.2p1_1858F.1_g305520 Hydrangea macrophylla HOM05D006778 ORTHO05D008341 7.8e-15 84.3 42 78.6
Atru.chr5.1931 Acer truncatum HOM05D006778 ORTHO05D008341 3.0e-14 82.4 76 57.9
C07p56450 Brassica napus HOM05D006778 ORTHO05D008341 8.7e-14 80.9 196 30.1
AUR62008897 Chenopodium quinoa HOM05D006778 ORTHO05D008341 8.7e-14 80.9 141 44.7
BraA01t00857Z Brassica rapa HOM05D006778 ORTHO05D008341 1.1e-13 80.5 171 31.6
Actinidia30101 Actinidia chinensis HOM05D006778 ORTHO05D008341 4.3e-13 78.6 76 53.9
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 2.8e-12 75.9 141 32.6
Hund05528 Selenicereus undatus HOM05D006778 ORTHO05D008341 3.6e-12 75.5 127 40.2
Lsat_1_v5_gn_9_11140 Lactuca sativa HOM05D006778 ORTHO05D008341 4.8e-12 75.1 76 51.3
VMungo0720G2677 Vigna mungo HOM05D006778 ORTHO05D008341 8.1e-12 74.3 132 36.4
A03p58430 Brassica napus HOM05D006778 ORTHO05D008341 1.8e-11 73.2 186 29.6
PSO017G3634 Papaver somniferum HOM05D006778 ORTHO05D008341 3.4e-10 68.9 73 45.2
Aa31LG2G21570 Aethionema arabicum HOM05D006778 ORTHO05D008341 4.4e-10 68.6 158 31.6
Sc17g0002480 Simmondsia chinensis HOM05D006778 ORTHO05D008341 5.8e-10 68.2 96 39.6
Ca_09622_v3 Cicer arietinum L. HOM05D006778 ORTHO05D008341 1.3e-09 67.0 64 54.7
PSO063G2427 Papaver somniferum HOM05D006778 ORTHO05D008341 1.3e-09 67.0 73 42.5
Sed0026958 Sechium edule HOM05D006778 ORTHO05D008341 1.7e-09 66.6 69 53.6
SalBow4G2567 Salvia bowleyana HOM05D006778 ORTHO05D008341 2.2e-09 66.2 52 65.4
MD10G1170500 Malus domestica HOM05D006778 ORTHO05D008341 8.4e-09 64.3 132 32.6
unitig_749.g13722 Utricularia gibba HOM05D006778 ORTHO05D008341 5.4e-08 61.6 96 37.5
Gohir.D08G007200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 2.1e-07 59.7 72 47.2
MBI11_g20194_MAGBIO Magnolia biondii HOM05D006778 ORTHO05D008341 1.7e-06 56.6 52 55.8
Gohir.A05G416601 Gossypium hirsutum HOM05D006778 ORTHO05D008341 2.3e-06 56.2 72 45.8
Gohir.A05G417001 Gossypium hirsutum HOM05D006778 ORTHO05D008341 2.3e-06 56.2 72 45.8
Gorai.012G000200 Gossypium raimondii HOM05D006778 ORTHO05D008341 2.3e-06 56.2 72 45.8


User provided reference genes

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