Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 1.0e-290 1002.7 495 100.0
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 1.0e-287 992.6 495 98.8
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 9.8e-286 986.1 495 97.6
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.0e-278 961.8 495 96.0
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 7.0e-276 953.4 495 94.7
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.3e-271 938.3 510 91.8
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 2.9e-269 931.4 506 90.7
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 8.4e-253 876.7 496 85.7
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 2.7e-251 871.7 494 85.6
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 2.3e-250 868.6 489 85.9
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 2.5e-249 865.1 491 84.5
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 3.3e-249 864.8 489 84.9
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 9.6e-249 863.2 497 84.3
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 3.6e-248 861.3 495 84.0
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 3.6e-248 861.3 494 85.8
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 4.8e-248 860.9 491 84.5
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 4.8e-248 860.9 493 85.4
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 6.2e-248 860.5 497 85.5
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 1.4e-247 859.4 492 84.8
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 1.8e-247 859.0 497 83.7
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 2.4e-247 858.6 498 85.1
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.0e-247 857.8 495 83.6
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 4.0e-247 857.8 493 84.8
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 5.3e-247 857.4 492 83.7
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 5.3e-247 857.4 496 84.3
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 5.3e-247 857.4 493 85.2
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 9.0e-247 856.7 493 84.0
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.0e-247 856.7 495 83.4
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 4.5e-246 854.4 496 84.5
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 5.8e-246 854.0 492 83.7
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 7.6e-246 853.6 492 84.6
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 9.9e-246 853.2 495 84.4
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.9e-245 850.9 495 83.0
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 8.4e-245 850.1 493 83.6
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 8.4e-245 850.1 484 85.1
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 8.4e-245 850.1 491 83.7
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.9e-244 849.0 496 83.9
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 2.4e-244 848.6 491 83.9
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 3.2e-244 848.2 496 83.1
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 5.4e-244 847.4 494 84.2
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 2.7e-243 845.1 493 83.0
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.0e-243 844.0 495 82.6
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 7.9e-243 843.6 487 83.4
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 1.8e-242 842.4 491 82.9
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.8e-242 842.4 532 80.1
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.3e-242 842.0 491 83.3
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 2.3e-242 842.0 493 82.6
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 3.9e-242 841.3 491 83.7
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 3.9e-242 841.3 495 82.0
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 3.9e-242 841.3 496 82.7
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 3.9e-242 841.3 492 83.3
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 6.7e-242 840.5 491 83.3
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 6.7e-242 840.5 495 81.8
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 8.7e-242 840.1 492 83.3
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 1.5e-241 839.3 500 83.0
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.5e-241 839.3 491 83.5
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.3e-241 837.8 491 83.1
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.8e-240 835.1 491 82.9
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 4.8e-240 834.3 493 82.4
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 4.8e-240 834.3 498 82.1
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 4.8e-240 834.3 496 82.1
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 2.4e-239 832.0 494 81.8
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 4.0e-239 831.2 494 82.4
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 6.9e-239 830.5 494 82.2
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 9.0e-239 830.1 493 81.5
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 5.8e-238 827.4 488 83.2
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 5.8e-238 827.4 487 83.4
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 1.4e-236 822.8 530 77.0
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 1.9e-236 822.4 495 80.2
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 2.4e-236 822.0 491 81.3
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 2.4e-236 822.0 492 81.9
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 3.2e-236 821.6 493 80.5
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 4.2e-236 821.2 491 81.3
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 7.1e-236 820.5 479 82.9
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 1.6e-235 819.3 496 79.6
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.6e-235 819.3 492 79.9
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.6e-235 819.3 497 80.9
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 2.1e-235 818.9 494 80.8
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 2.7e-235 818.5 496 80.6
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 7.9e-235 817.0 473 83.7
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.3e-234 816.2 493 80.1
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 1.3e-234 816.2 487 82.3
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 1.8e-234 815.8 488 79.9
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 1.8e-234 815.8 493 79.9
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 3.0e-234 815.1 486 81.3
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 3.0e-234 815.1 488 81.1
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 3.9e-234 814.7 488 81.4
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 5.1e-234 814.3 488 79.7
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 1.5e-233 812.8 488 80.3
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 3.3e-233 811.6 488 79.9
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 2.1e-232 808.9 486 79.4
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 3.7e-232 808.1 488 79.9
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 4.8e-232 807.7 493 79.3
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 6.2e-232 807.4 493 79.1
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 8.1e-232 807.0 496 78.4
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 6.9e-231 803.9 484 81.0
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 3.4e-230 801.6 493 79.3
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 4.5e-230 801.2 488 78.9
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 4.9e-229 797.7 493 78.7
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.2e-228 795.0 495 79.6
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 8.5e-221 770.4 443 84.2
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 4.2e-220 768.1 491 76.8
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 9.3e-220 766.9 488 77.0
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 3.6e-219 765.0 437 83.3
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 9.7e-217 756.9 492 75.8
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 1.6e-216 756.1 436 84.9
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 6.9e-215 750.7 513 73.3
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 5.0e-213 744.6 443 83.1
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 1.1e-212 743.4 441 81.9
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 2.2e-208 729.2 443 79.7
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 6.5e-205 717.6 488 71.9
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 4.2e-204 714.9 439 80.0
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 9.7e-201 703.7 485 72.8
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 2.2e-200 702.6 383 88.8
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 9.1e-199 697.2 487 69.0
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 5.3e-191 671.4 405 80.7
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 4.2e-188 661.8 491 69.5
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 1.2e-185 653.7 493 68.0
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 2.0e-182 642.9 381 81.9
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.7e-182 642.5 471 70.5
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.9e-180 636.3 385 80.8
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 4.0e-178 628.6 508 62.6
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 2.4e-175 619.4 386 80.1
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 3.3e-172 609.0 493 65.1
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 8.0e-163 577.8 461 67.9
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 2.3e-162 576.2 348 81.0
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 1.3e-157 560.5 382 73.6
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 1.5e-145 520.4 529 51.2
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.6e-139 499.2 266 90.6
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.6e-123 447.2 472 51.5
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 6.9e-122 441.8 253 85.0
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 2.4e-114 416.8 255 79.2
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.3e-112 411.0 228 87.7
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 1.3e-109 401.0 301 68.8
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 8.2e-107 391.7 443 50.6
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 2.4e-106 390.2 238 77.7
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.3e-104 384.4 482 47.3
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 3.6e-102 376.3 251 70.5
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 3.9e-101 372.9 303 68.0
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.1e-94 349.0 312 59.9
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.6e-92 343.6 238 72.3
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 1.4e-87 327.8 240 67.5
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 1.0e-80 305.1 249 65.9
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.7e-59 234.6 260 51.9
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 3.1e-58 230.3 159 70.4
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 6.1e-54 216.1 150 72.0
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 1.7e-51 208.0 297 43.8
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 6.0e-49 199.5 103 90.3
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 2.3e-45 187.6 96 89.6
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 8.9e-45 185.7 104 85.6
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 8.9e-45 185.7 151 66.9
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 5.4e-42 176.4 146 58.9
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 5.1e-40 169.9 105 75.2
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 2.6e-36 157.5 130 60.8
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 3.3e-31 140.6 75 88.0
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 8.1e-30 136.0 79 78.5
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 4.4e-28 130.2 161 45.3
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 1.9e-26 124.8 85 70.6
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 2.7e-17 94.4 93 53.8
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.3e-16 92.0 61 80.3
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 7.3e-15 86.3 74 56.8
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 2.4e-10 71.2 51 68.6
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 2.4e-10 71.2 36 86.1
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 3.0e-08 64.3 51 58.8
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 1.1e-07 62.4 30 86.7
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 6.2e-06 56.6 38 73.7


User provided reference genes

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