Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 8.3e-203 710.3 394 100.0
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 1.7e-200 702.6 394 99.2
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 4.7e-198 694.5 394 98.0
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 5.4e-194 681.0 394 95.4
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 2.6e-188 662.1 394 92.6
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 7.1e-170 600.9 394 87.6
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 1.7e-168 596.3 394 84.3
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 3.3e-167 592.0 394 84.0
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.6e-166 589.7 394 82.5
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 1.1e-162 577.0 394 81.5
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 9.2e-162 573.9 394 82.0
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 2.1e-161 572.8 404 82.4
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 7.8e-161 570.9 394 81.2
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 1.7e-160 569.7 394 80.2
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 5.1e-160 568.2 394 80.7
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 1.1e-159 567.0 394 78.9
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 5.6e-159 564.7 394 79.4
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 9.6e-159 563.9 394 77.7
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 1.2e-158 563.5 394 77.7
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 2.1e-158 562.8 394 77.4
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 3.6e-158 562.0 394 75.4
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 4.7e-158 561.6 394 78.7
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 8.1e-158 560.8 394 78.9
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 1.8e-157 559.7 438 73.7
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 1.8e-157 559.7 394 79.2
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 3.1e-157 558.9 394 78.4
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 4.0e-157 558.5 394 77.9
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 5.2e-157 558.1 394 79.2
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 9.0e-157 557.4 394 79.2
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.2e-156 557.0 394 77.4
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 3.4e-156 555.4 394 78.9
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 3.4e-156 555.4 394 78.7
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 5.8e-156 554.7 394 78.7
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 5.8e-156 554.7 394 78.7
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 7.6e-156 554.3 394 76.1
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 7.6e-156 554.3 394 75.4
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 9.9e-156 553.9 410 77.1
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.3e-155 553.5 394 78.4
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.3e-155 553.5 394 78.4
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 2.2e-155 552.7 394 77.4
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 2.9e-155 552.4 396 77.3
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 3.8e-155 552.0 394 76.9
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 3.8e-155 552.0 394 77.4
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 4.9e-155 551.6 394 76.9
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 8.4e-155 550.8 392 76.3
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.1e-154 550.4 394 77.9
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 1.1e-154 550.4 394 77.7
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 1.1e-154 550.4 417 77.0
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 2.7e-153 545.8 395 79.0
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 4.6e-153 545.0 395 78.2
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 4.6e-153 545.0 395 77.7
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 6.0e-153 544.7 395 72.9
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 6.0e-153 544.7 394 83.0
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 1.3e-152 543.5 401 76.1
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 5.1e-152 541.6 395 72.7
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 6.6e-152 541.2 395 72.7
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 1.1e-151 540.4 394 78.4
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 2.5e-151 539.3 397 72.8
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 5.6e-151 538.1 394 71.3
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 3.6e-150 535.4 394 71.3
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 1.1e-149 533.9 394 70.8
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 1.8e-149 533.1 394 71.8
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 4.5e-148 528.5 394 71.3
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 9.9e-148 527.3 397 75.6
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 1.3e-147 526.9 397 75.3
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 2.9e-147 525.8 394 75.1
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 1.9e-146 523.1 370 78.6
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 2.4e-146 522.7 394 70.3
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 3.2e-146 522.3 378 75.9
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 2.7e-145 519.2 370 78.6
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 4.6e-145 518.5 394 69.8
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 4.6e-145 518.5 395 75.4
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 6.0e-145 518.1 394 66.2
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 6.0e-145 518.1 394 74.9
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 7.9e-145 517.7 394 69.8
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 7.9e-145 517.7 394 69.8
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 1.3e-144 516.9 399 69.4
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 6.7e-144 514.6 394 67.0
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 8.7e-144 514.2 395 74.4
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 1.9e-143 513.1 393 74.6
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 4.3e-143 511.9 394 74.1
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 3.7e-142 508.8 395 73.2
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 4.8e-142 508.4 394 74.1
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 7.6e-140 501.1 395 71.6
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 6.4e-139 498.0 378 69.3
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 3.2e-138 495.7 394 71.8
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 1.2e-137 493.8 409 69.9
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 1.3e-136 490.3 426 68.8
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 2.5e-135 486.1 387 74.2
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 3.7e-134 482.3 405 69.9
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 1.8e-133 479.9 401 69.8
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 1.3e-131 473.8 395 68.4
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 3.9e-128 462.2 358 68.4
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 1.5e-127 460.3 403 63.0
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 2.8e-126 456.1 394 62.7
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 6.7e-120 434.9 372 68.5
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 1.1e-117 427.6 394 58.1
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 3.9e-112 409.1 346 71.7
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 4.5e-108 395.6 382 60.7
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 1.3e-99 367.5 287 76.3
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 5.5e-98 362.1 394 51.5
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 2.6e-95 353.2 399 49.4
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 2.9e-91 339.7 398 50.3
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 6.5e-91 338.6 246 69.5
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 2.5e-90 336.7 394 51.5
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 6.8e-88 328.6 327 64.5
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 1.8e-80 303.9 300 55.7
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.3e-75 287.7 378 48.1
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 1.2e-73 281.2 302 53.6
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 2.0e-68 263.8 390 50.8
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 2.3e-67 260.4 181 71.3
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 8.6e-67 258.5 181 71.3
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 6.0e-60 235.7 292 50.7
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 1.7e-51 207.6 540 31.3
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 1.5e-50 204.5 419 32.9
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 2.8e-49 200.3 122 82.8
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.8e-48 197.6 153 73.9
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 2.7e-44 183.7 165 57.6
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 6.0e-44 182.6 204 52.0
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 6.0e-44 182.6 409 34.5
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 2.5e-42 177.2 392 32.9
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 5.6e-42 176.0 125 73.6
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 5.3e-40 169.5 166 54.8
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 4.3e-34 149.8 92 80.4
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 1.7e-30 137.9 88 81.8
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 3.8e-30 136.7 137 52.6
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 9.3e-29 132.1 125 64.8
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 4.6e-28 129.8 71 80.3
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 1.1e-26 125.2 150 47.3
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 1.6e-25 121.3 71 81.7
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 4.0e-24 116.7 88 67.0
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 2.0e-23 114.4 129 48.1
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 3.4e-23 113.6 116 51.7
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 2.2e-22 110.9 130 64.6
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 3.8e-22 110.2 147 41.5
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 6.2e-17 92.8 80 66.2
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 1.1e-16 92.0 50 78.0
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 2.2e-14 84.3 85 49.4
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 1.4e-13 81.6 46 87.0
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 2.1e-12 77.8 51 76.5
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 2.1e-12 77.8 48 64.6
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 7.9e-12 75.9 44 86.4
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 6.7e-11 72.8 47 70.2
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 4.3e-10 70.1 38 89.5
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 3.1e-08 63.9 35 85.7


User provided reference genes

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