Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g030360 Solanum pennellii HOM05D006521 ORTHO05D008087 3.0e-210 734.9 383 100.0
Solyc05g051840.1 Solanum lycopersicum HOM05D006521 ORTHO05D008087 7.0e-207 723.8 383 94.8
PGSC0003DMG400021832 Solanum tuberosum HOM05D006521 ORTHO05D008087 3.5e-206 721.5 383 94.5
Nitab4.5_0000715g0180 Nicotiana tabacum HOM05D006521 ORTHO05D008087 1.6e-190 669.5 385 86.0
CAN.G1494.2 Capsicum annuum HOM05D006521 ORTHO05D008087 2.8e-171 605.5 386 79.0
Nitab4.5_0005597g0010 Nicotiana tabacum HOM05D006521 ORTHO05D008087 2.1e-155 552.7 385 74.5
Cc07_g15580 Coffea canephora HOM05D006521 ORTHO05D008087 9.0e-138 494.2 357 68.3
Migut.H02388 Erythranthe guttata HOM05D006521 ORTHO05D008087 1.1e-130 470.7 357 66.4
SGA_v2.0_scaffold2G01323 Striga asiatica HOM05D006521 ORTHO05D008087 1.1e-130 470.7 355 67.3
Dinv16313 Davidia involucrata HOM05D006521 ORTHO05D008087 7.7e-129 464.5 355 65.1
Dinv00937 Davidia involucrata HOM05D006521 ORTHO05D008087 1.0e-128 464.2 355 65.1
Oeu053565.1 Olea europaea HOM05D006521 ORTHO05D008087 1.3e-128 463.8 366 65.6
SalBow3G0008 Salvia bowleyana HOM05D006521 ORTHO05D008087 1.4e-127 460.3 357 65.3
Hma1.2p1_0011F.1_g007170 Hydrangea macrophylla HOM05D006521 ORTHO05D008087 3.2e-127 459.1 356 64.0
MELO3C007776.2 Cucumis melo HOM05D006521 ORTHO05D008087 1.4e-122 443.7 360 61.7
TWI74G1358 Tripterygium wilfordii HOM05D006521 ORTHO05D008087 1.4e-122 443.7 361 62.3
PGR004G2411 Punica granatum HOM05D006521 ORTHO05D008087 2.4e-122 443.0 354 63.0
QL06p050323 Quercus lobata HOM05D006521 ORTHO05D008087 2.4e-122 443.0 352 62.2
Lalb_Chr11g0075241 Lupinus albus HOM05D006521 ORTHO05D008087 5.3e-122 441.8 358 62.0
Prupe.3G102100 Prunus persica HOM05D006521 ORTHO05D008087 9.1e-122 441.0 353 62.3
RcHm_v2.0_Chr2g0115391 Rosa chinensis HOM05D006521 ORTHO05D008087 4.5e-121 438.7 355 62.3
ClCG01G018970 Citrullus lanatus HOM05D006521 ORTHO05D008087 1.3e-120 437.2 360 61.4
arahy.Tifrunner.gnm1.ann1.IK9JFE Arachis hypogaea HOM05D006521 ORTHO05D008087 1.7e-120 436.8 364 61.3
CANSAT01G1058 Cannabis sativa HOM05D006521 ORTHO05D008087 2.2e-120 436.4 362 61.6
Ciclev10025891m.g Citrus clementina HOM05D006521 ORTHO05D008087 2.2e-120 436.4 357 63.0
arahy.Tifrunner.gnm1.ann1.2NAN3W Arachis hypogaea HOM05D006521 ORTHO05D008087 6.5e-120 434.9 364 61.0
unitig_32.g11814 Utricularia gibba HOM05D006521 ORTHO05D008087 6.5e-120 434.9 355 61.1
CsaV3_6G045650 Cucumis sativus L. HOM05D006521 ORTHO05D008087 8.5e-120 434.5 356 61.2
Sed0002886 Sechium edule HOM05D006521 ORTHO05D008087 1.1e-119 434.1 358 61.2
TAR376G0467 Trochodendron aralioides HOM05D006521 ORTHO05D008087 1.1e-119 434.1 360 60.0
FAN19G2752 Fragaria x ananassa HOM05D006521 ORTHO05D008087 3.2e-119 432.6 347 62.2
Thecc.01G106200 Theobroma cacao HOM05D006521 ORTHO05D008087 4.2e-119 432.2 360 62.5
FvH4_1g21530 Fragaria vesca HOM05D006521 ORTHO05D008087 9.4e-119 431.0 347 62.0
Manes.12G138400 Manihot esculenta HOM05D006521 ORTHO05D008087 9.4e-119 431.0 357 62.7
Duzib147G0857 Durio zibethinus HOM05D006521 ORTHO05D008087 1.2e-118 430.6 362 61.6
FAN28G0591 Fragaria x ananassa HOM05D006521 ORTHO05D008087 1.2e-118 430.6 347 61.4
Phvul.001G250400 Phaseolus vulgaris HOM05D006521 ORTHO05D008087 1.6e-118 430.3 356 61.8
FAN23G2501 Fragaria x ananassa HOM05D006521 ORTHO05D008087 3.6e-118 429.1 347 62.0
Potri.005G079300 Populus trichocarpa HOM05D006521 ORTHO05D008087 4.7e-118 428.7 351 62.1
Psat5g088760 Pisum sativum HOM05D006521 ORTHO05D008087 6.1e-118 428.3 357 61.3
Rhsim10G0157900 Rhododendron simsii HOM05D006521 ORTHO05D008087 6.1e-118 428.3 359 61.0
VMungo1383G3636 Vigna mungo HOM05D006521 ORTHO05D008087 6.1e-118 428.3 343 62.7
Glyma.18G019200 Glycine max HOM05D006521 ORTHO05D008087 1.8e-117 426.8 355 62.0
Lsat_1_v5_gn_4_21220 Lactuca sativa HOM05D006521 ORTHO05D008087 1.8e-117 426.8 354 61.9
Medtr3g087760 Medicago truncatula HOM05D006521 ORTHO05D008087 3.0e-117 426.0 355 61.7
Eucgr.I00394 Eucalyptus grandis HOM05D006521 ORTHO05D008087 4.0e-117 425.6 364 58.2
Ca_16545_v3 Cicer arietinum L. HOM05D006521 ORTHO05D008087 5.2e-117 425.2 356 61.8
Gorai.007G061700 Gossypium raimondii HOM05D006521 ORTHO05D008087 1.5e-116 423.7 360 60.8
Atru.chr4.229 Acer truncatum HOM05D006521 ORTHO05D008087 2.0e-116 423.3 354 62.7
Aqoxy5G01962 Aquilegia oxysepala HOM05D006521 ORTHO05D008087 2.0e-116 423.3 364 57.4
HanXRQChr16g0527921 Helianthus annuus HOM05D006521 ORTHO05D008087 2.0e-116 423.3 354 60.5
ECA234G2647 Erigeron canadensis HOM05D006521 ORTHO05D008087 4.4e-116 422.2 359 60.7
PSO447G0171 Papaver somniferum HOM05D006521 ORTHO05D008087 4.4e-116 422.2 359 58.2
Lj6g0010661 Lotus japonicus HOM05D006521 ORTHO05D008087 1.3e-115 420.6 356 61.5
Cpa.g.sc20.228 Carica papaya HOM05D006521 ORTHO05D008087 2.2e-115 419.9 359 59.6
Glyma.11G238100 Glycine max HOM05D006521 ORTHO05D008087 2.8e-115 419.5 362 59.4
Sed0013283 Sechium edule HOM05D006521 ORTHO05D008087 3.7e-115 419.1 361 57.9
THA.LOC104807700 Tarenaya hassleriana HOM05D006521 ORTHO05D008087 3.7e-115 419.1 350 62.0
PSO210G2459 Papaver somniferum HOM05D006521 ORTHO05D008087 6.3e-115 418.3 359 57.7
TWI77G0511 Tripterygium wilfordii HOM05D006521 ORTHO05D008087 8.2e-115 417.9 358 59.2
Sc16g0005450 Simmondsia chinensis HOM05D006521 ORTHO05D008087 7.0e-114 414.8 362 59.9
A08p23330 Brassica napus HOM05D006521 ORTHO05D008087 1.2e-113 414.1 352 59.7
BraA08t34287Z Brassica rapa HOM05D006521 ORTHO05D008087 1.2e-113 414.1 352 59.7
Lsat_1_v5_gn_2_67800 Lactuca sativa HOM05D006521 ORTHO05D008087 1.2e-113 414.1 342 59.6
THA.LOC104824871 Tarenaya hassleriana HOM05D006521 ORTHO05D008087 1.6e-113 413.7 361 59.3
Gorai.008G103700 Gossypium raimondii HOM05D006521 ORTHO05D008087 2.7e-113 412.9 362 60.2
Duzib264G0874 Durio zibethinus HOM05D006521 ORTHO05D008087 7.7e-113 411.4 360 59.7
C03p78340 Brassica napus HOM05D006521 ORTHO05D008087 2.2e-112 409.8 355 59.4
HanXRQChr15g0471711 Helianthus annuus HOM05D006521 ORTHO05D008087 2.2e-112 409.8 339 59.6
BolC3t20094H Brassica oleracea HOM05D006521 ORTHO05D008087 2.9e-112 409.5 353 59.8
Thhalv10025314m.g Eutrema salsugineum HOM05D006521 ORTHO05D008087 3.8e-112 409.1 362 56.9
Sabra05G0065200 Salix brachista HOM05D006521 ORTHO05D004292 8.5e-112 407.9 346 59.8
Carub.0007s0173 Capsella rubella HOM05D006521 ORTHO05D008087 1.5e-111 407.1 362 57.5
AT4G39820 Arabidopsis thaliana HOM05D006521 ORTHO05D008087 2.5e-111 406.4 362 57.2
TPR.G22881 Trifolium pratense HOM05D006521 ORTHO05D008087 3.6e-110 402.5 383 56.7
DCAR_011503 Daucus carota HOM05D006521 ORTHO05D008087 4.7e-110 402.1 362 58.8
Aa31LG6G15450 Aethionema arabicum HOM05D006521 ORTHO05D008087 8.0e-110 401.4 350 58.9
CARHR246880 Cardamine hirsuta HOM05D006521 ORTHO05D008087 8.0e-110 401.4 362 56.6
Sp7g36070 Schrenkiella parvula HOM05D006521 ORTHO05D008087 1.0e-109 401.0 350 58.0
AL7G12040 Arabidopsis lyrata HOM05D006521 ORTHO05D008087 1.4e-109 400.6 362 56.4
AUR62002034 Chenopodium quinoa HOM05D006521 ORTHO05D008087 1.5e-108 397.1 355 57.5
AUR62003763 Chenopodium quinoa HOM05D006521 ORTHO05D008087 1.7e-107 393.7 355 56.9
Lj4A881T25 Lonicera japonica HOM05D006521 ORTHO05D008087 3.7e-107 392.5 356 58.1
SHI11594 Sapria himalayana HOM05D006521 ORTHO05D008087 2.0e-105 386.7 360 55.6
Ah.02g122760 Amaranthus hybridus HOM05D006521 ORTHO05D008087 2.2e-104 383.3 354 54.5
Haze_24978 Corylus avellana HOM05D006521 ORTHO05D008087 2.7e-102 376.3 353 55.5
CiPaw.03G138700 Carya illinoinensis HOM05D006521 ORTHO05D008087 4.7e-102 375.6 357 54.6
Ah.02g120360 Amaranthus hybridus HOM05D006521 ORTHO05D008087 8.0e-102 374.8 339 55.2
Lj4A883T21 Lonicera japonica HOM05D006521 ORTHO05D008087 1.4e-101 374.0 350 56.0
HPP92_016137 Vanilla planifolia HOM05D006521 ORTHO05D008087 8.3e-99 364.8 356 54.5
Hund13498 Selenicereus undatus HOM05D006521 ORTHO05D008087 1.1e-98 364.4 337 55.5
Cfa002704 Carpinus fangiana HOM05D006521 ORTHO05D008087 4.3e-95 352.4 353 53.3
ATR0789G153 Amborella trichopoda HOM05D006521 ORTHO05D008087 6.8e-93 345.1 476 41.0
Actinidia36602 Actinidia chinensis HOM05D006521 ORTHO05D008087 2.2e-91 340.1 299 57.5
CDE10G1235 Ceratophyllum demersum HOM05D006521 ORTHO05D008087 5.0e-88 328.9 345 49.0
Nn1g05268 Nelumbo nucifera HOM05D006521 ORTHO05D008087 6.6e-88 328.6 311 54.7
Atru.chr1.3715 Acer truncatum HOM05D006521 ORTHO05D008087 2.4e-82 310.1 352 51.1
COL.COLO4_09911 Corchorus olitorius HOM05D006521 ORTHO05D008087 1.6e-81 307.4 353 48.7
BcaNung05326 Brassica carinata HOM05D006521 ORTHO05D008087 2.7e-81 306.6 302 53.0
Peaxi162Scf00295g00033 Petunia axillaris HOM05D006521 ORTHO05D008087 8.9e-77 291.6 180 82.2
SEGI_26188 Sequoiadendron giganteum HOM05D006521 ORTHO05D008087 3.4e-76 289.7 567 34.0
C01p00850 Brassica napus HOM05D006521 ORTHO05D008087 1.4e-74 284.3 352 46.9
SMO353G0213 Selaginella moellendorffii HOM05D006521 ORTHO05D008087 4.7e-70 269.2 350 42.0
Os02g0550400 Oryza sativa ssp. japonica HOM05D006521 ORTHO05D008087 3.1e-69 266.5 333 47.7
EL10Ac6g15070 Beta vulgaris HOM05D006521 ORTHO05D008087 9.9e-68 261.5 207 61.8
AagrBONN_evm.TU.Sc2ySwM_368.767 Anthoceros agrestis HOM05D006521 ORTHO05D008087 4.1e-66 256.1 401 37.2
Mapoly0165s0018 Marchantia polymorpha HOM05D006521 ORTHO05D008087 1.0e-64 251.5 425 36.9
Pp3c19_5060 Physcomitrium patens HOM05D006521 ORTHO05D008087 1.3e-64 251.1 402 36.1
Pp3c22_3810 Physcomitrium patens HOM05D006521 ORTHO05D008087 1.9e-63 247.3 402 36.1
ECA238G1388 Erigeron canadensis HOM05D001700 ORTHO05D002131 1.3e-59 234.6 155 69.7
ECA238G2228 Erigeron canadensis HOM05D006521 ORTHO05D008087 4.9e-59 232.6 154 69.5
Atru.chr1.3697 Acer truncatum HOM05D006521 ORTHO05D008087 2.5e-55 220.3 145 77.2
A01p00740 Brassica napus HOM05D006521 ORTHO05D008087 1.3e-54 218.0 259 46.7
Pp3c10_9400 Physcomitrium patens HOM05D006521 ORTHO05D008087 1.8e-53 214.2 379 32.2
Pp3c14_5890 Physcomitrium patens HOM05D006521 ORTHO05D008087 1.3e-51 208.0 379 32.7
BcaNung00904 Brassica carinata HOM05D006521 ORTHO05D008087 5.1e-48 196.1 117 80.3
CBR_g34484 Chara braunii HOM05D006521 ORTHO05D008087 2.6e-36 157.1 246 38.2
HanXRQChr10g0288811 Helianthus annuus HOM05D006521 ORTHO05D008087 3.4e-36 156.8 105 75.2
TAR636G0192 Trochodendron aralioides HOM05D006521 ORTHO05D008087 1.3e-24 118.2 127 48.8
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 6.1e-17 92.8 134 38.8
PRCOL_00001846 Prasinoderma coloniale HOM05D006521 ORTHO05D008087 9.1e-13 79.0 270 27.8
Atru.chr1.3698 Acer truncatum HOM05D006521 ORTHO05D008087 1.5e-12 78.2 60 63.3
GSVIVG01022164001 Vitis vinifera HOM05D006521 ORTHO05D008087 1.3e-11 75.1 78 47.4


User provided reference genes

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