Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 1.3e-85 319.7 157 100.0
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 1.3e-85 319.7 157 100.0
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 2.4e-84 315.5 157 99.4
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.1e-77 292.4 157 91.7
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 4.5e-75 284.6 158 91.1
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 4.0e-68 261.5 157 84.7
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 5.3e-68 261.2 156 85.3
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 6.7e-63 244.2 157 80.3
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 1.6e-61 239.6 151 82.1
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 6.9e-60 234.2 150 80.7
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 6.9e-60 234.2 158 77.2
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 9.0e-60 233.8 157 77.1
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 2.0e-59 232.6 157 76.4
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 5.9e-59 231.1 158 77.2
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 8.5e-58 227.3 153 77.8
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 1.6e-56 223.0 166 72.9
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 3.6e-56 221.9 155 74.8
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 3.6e-56 221.9 164 71.3
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 1.8e-55 219.5 152 77.0
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 2.3e-55 219.2 155 78.1
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 3.0e-55 218.8 155 78.1
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 3.0e-55 218.8 155 78.1
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 5.1e-55 218.0 147 76.9
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 6.7e-55 217.6 156 73.1
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 8.7e-55 217.2 155 76.1
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 2.5e-54 215.7 160 72.5
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 2.5e-54 215.7 155 78.1
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 3.3e-54 215.3 155 78.1
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 5.7e-54 214.5 134 79.1
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 5.7e-54 214.5 161 68.9
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 1.3e-53 213.4 156 72.4
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 1.6e-53 213.0 145 75.9
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 2.2e-53 212.6 156 71.8
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 2.2e-53 212.6 156 71.2
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 2.2e-53 212.6 156 71.8
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 2.2e-53 212.6 156 71.8
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 2.2e-53 212.6 149 75.8
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 6.3e-53 211.1 117 83.8
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 1.1e-52 210.3 156 71.2
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 1.4e-52 209.9 156 71.2
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 1.8e-52 209.5 147 76.2
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 2.4e-52 209.1 147 75.5
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 2.4e-52 209.1 149 75.8
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.4e-52 209.1 126 81.7
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 4.1e-52 208.4 132 81.1
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 6.9e-52 207.6 115 84.3
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 6.9e-52 207.6 162 70.4
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 1.2e-51 206.8 148 73.6
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 1.2e-51 206.8 147 72.1
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 1.5e-51 206.5 156 70.5
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.5e-51 206.5 148 74.3
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 2.0e-51 206.1 150 73.3
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 3.4e-51 205.3 154 74.0
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 4.5e-51 204.9 145 75.2
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 7.7e-51 204.1 156 69.9
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 1.3e-50 203.4 139 75.5
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 1.7e-50 203.0 137 75.2
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 2.9e-50 202.2 126 80.2
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 3.8e-50 201.8 155 72.3
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 6.5e-50 201.1 148 73.6
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 1.1e-49 200.3 148 72.3
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 1.1e-49 200.3 156 71.2
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 1.4e-49 199.9 145 75.2
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 1.9e-49 199.5 147 72.8
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 2.5e-49 199.1 147 70.7
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 2.5e-49 199.1 122 80.3
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 3.2e-49 198.7 149 71.8
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 4.2e-49 198.4 141 77.3
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 4.2e-49 198.4 155 71.6
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 5.5e-49 198.0 154 70.8
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 7.2e-49 197.6 170 65.9
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 1.6e-48 196.4 158 67.7
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 1.6e-48 196.4 163 66.3
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.6e-48 196.4 121 79.3
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 2.1e-48 196.1 140 73.6
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 2.1e-48 196.1 146 71.9
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 3.6e-48 195.3 146 73.3
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 3.6e-48 195.3 207 56.0
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 4.6e-48 194.9 147 68.7
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 4.6e-48 194.9 126 77.0
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 6.1e-48 194.5 126 77.0
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 7.9e-48 194.1 160 68.8
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 1.0e-47 193.7 123 78.9
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.0e-47 193.7 157 70.7
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 1.8e-47 193.0 123 78.9
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.8e-47 193.0 122 79.5
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 2.3e-47 192.6 126 76.2
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 2.3e-47 192.6 147 72.1
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 3.9e-47 191.8 141 73.0
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.9e-47 191.8 147 68.0
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.9e-47 191.8 141 73.0
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 3.9e-47 191.8 120 78.3
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.7e-47 191.0 141 71.6
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 6.7e-47 191.0 133 76.7
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 1.1e-46 190.3 151 66.9
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 2.0e-46 189.5 157 66.2
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 2.6e-46 189.1 137 70.1
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 2.6e-46 189.1 143 70.6
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 2.6e-46 189.1 142 69.7
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 3.3e-46 188.7 122 77.0
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 3.3e-46 188.7 147 67.3
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 3.3e-46 188.7 143 70.6
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 5.7e-46 188.0 150 66.7
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 7.4e-46 187.6 145 71.7
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.4e-46 187.6 147 67.3
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 9.7e-46 187.2 150 68.0
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 1.3e-45 186.8 154 67.5
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 2.8e-45 185.7 150 66.7
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.3e-45 184.5 157 65.0
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 1.4e-44 183.3 147 67.3
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.8e-44 183.0 155 63.2
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 3.1e-44 182.2 155 66.5
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 6.9e-44 181.0 161 64.0
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 6.9e-44 181.0 147 66.7
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 9.1e-44 180.6 120 72.5
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 9.1e-44 180.6 155 69.0
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 2.6e-43 179.1 156 64.1
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 7.7e-43 177.6 156 63.5
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 5.5e-41 171.4 146 67.1
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 5.5e-41 171.4 146 67.1
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 3.6e-40 168.7 145 64.1
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 7.9e-40 167.5 120 75.0
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 7.9e-40 167.5 106 78.3
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 7.9e-40 167.5 146 64.4
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 1.0e-39 167.2 155 62.6
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.0e-39 167.2 105 79.0
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 1.4e-39 166.8 146 65.8
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 2.3e-39 166.0 119 66.4
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 3.0e-39 165.6 183 53.6
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 8.8e-39 164.1 123 66.7
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 8.8e-39 164.1 103 75.7
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.6e-38 162.5 145 63.4
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 4.8e-37 158.3 126 71.4
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.1e-36 157.1 189 49.7
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 2.4e-36 156.0 105 76.2
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 4.1e-36 155.2 155 55.5
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 5.3e-36 154.8 107 72.9
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 1.3e-34 150.2 146 59.6
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.3e-34 150.2 141 62.4
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.3e-34 150.2 141 62.4
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.0e-34 148.3 141 61.0
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 1.9e-33 146.4 120 59.2
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 1.9e-33 146.4 111 69.4
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 1.2e-32 143.7 130 61.5
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 1.6e-32 143.3 146 60.3
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 2.7e-32 142.5 97 80.4
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 1.5e-30 136.7 96 72.9
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 1.3e-29 133.7 128 57.8
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 6.3e-29 131.3 75 88.0
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 6.5e-26 121.3 134 52.2
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 1.0e-23 114.0 76 78.9
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 5.7e-22 108.2 120 59.2
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 4.8e-21 105.1 121 45.5
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 4.8e-21 105.1 57 84.2
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 6.3e-21 104.8 76 67.1
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 1.1e-20 104.0 77 72.7
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 1.4e-20 103.6 76 67.1
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 2.4e-20 102.8 59 81.4
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 1.2e-19 100.5 76 65.8
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 2.5e-17 92.8 61 75.4
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 2.8e-16 89.4 143 43.4
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 2.8e-13 79.3 64 59.4
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 1.6e-11 73.6 132 32.6
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 3.8e-10 68.9 157 31.2
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 5.2e-07 58.5 39 66.7


User provided reference genes

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