Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g020340 Solanum pennellii HOM05D003753 ORTHO05D020828 4.0e-50 201.1 97 100.0
Sopen05g009070 Solanum pennellii HOM05D003753 ORTHO05D020828 5.2e-50 200.7 97 99.0
Solyc05g025630.3 Solanum lycopersicum HOM05D003753 ORTHO05D005081 6.0e-46 187.2 90 98.9
Solyc05g014070.1 Solanum lycopersicum HOM05D003753 ORTHO05D020828 3.0e-45 184.9 90 97.8
Sopen00g013120 Solanum pennellii HOM05D003753 ORTHO05D020828 1.9e-44 182.2 96 91.7
Solyc05g018780.1 Solanum lycopersicum HOM05D003753 ORTHO05D005081 1.1e-39 166.4 96 85.4
Nitab4.5_0005634g0050 Nicotiana tabacum HOM05D003753 ORTHO05D005081 1.3e-35 152.9 100 76.0
Nitab4.5_0011030g0020 Nicotiana tabacum HOM05D003753 ORTHO05D005081 1.3e-35 152.9 100 76.0
PGSC0003DMG400013154 Solanum tuberosum HOM05D003753 ORTHO05D005081 2.1e-35 152.1 99 76.8
Dinv42315 Davidia involucrata HOM05D003753 ORTHO05D005081 6.2e-35 150.6 101 74.3
Solyc07g039200.4 Solanum lycopersicum HOM05D003753 ORTHO05D005081 6.2e-35 150.6 99 75.8
Sopen07g017550 Solanum pennellii HOM05D003753 ORTHO05D005081 6.2e-35 150.6 99 75.8
SGA_v2.0_scaffold75G25039 Striga asiatica HOM05D003753 ORTHO05D005081 1.4e-34 149.4 101 72.3
CAN.G732.16 Capsicum annuum HOM05D003753 ORTHO05D005081 2.4e-34 148.7 102 73.5
CANSAT56G3520 Cannabis sativa HOM05D003753 ORTHO05D005081 6.9e-34 147.1 99 71.7
Migut.J00089 Erythranthe guttata HOM05D003753 ORTHO05D005081 6.9e-34 147.1 101 71.3
Actinidia25255 Actinidia chinensis HOM05D003753 ORTHO05D005081 2.0e-33 145.6 98 72.4
Dinv36761 Davidia involucrata HOM05D003753 ORTHO05D005081 2.0e-33 145.6 101 72.3
Nn8g38881 Nelumbo nucifera HOM05D003753 ORTHO05D005081 2.0e-33 145.6 99 69.7
Oeu018239.1 Olea europaea HOM05D003753 ORTHO05D005081 3.4e-33 144.8 100 72.0
GSVIVG01015210001 Vitis vinifera HOM05D003753 ORTHO05D005081 3.4e-33 144.8 98 71.4
Cc06_g11340 Coffea canephora HOM05D003753 ORTHO05D005081 7.6e-33 143.7 100 68.0
Cfa003094 Carpinus fangiana HOM05D003753 ORTHO05D005081 9.9e-33 143.3 100 70.0
Haze_25905 Corylus avellana HOM05D003753 ORTHO05D005081 1.3e-32 142.9 100 70.0
Prupe.7G211000 Prunus persica HOM05D003753 ORTHO05D005081 2.2e-32 142.1 100 69.0
TWI34G0041 Tripterygium wilfordii HOM05D003753 ORTHO05D005081 2.2e-32 142.1 100 67.0
MBI06_g13419_MAGBIO Magnolia biondii HOM05D003753 ORTHO05D005081 2.9e-32 141.7 96 71.9
Manes.08G173100 Manihot esculenta HOM05D003753 ORTHO05D005081 2.9e-32 141.7 101 67.3
RcHm_v2.0_Chr2g0093231 Rosa chinensis HOM05D003753 ORTHO05D005081 4.9e-32 141.0 100 67.0
CSS0005601 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 6.4e-32 140.6 101 67.3
Ciclev10004888m.g Citrus clementina HOM05D003753 ORTHO05D005081 6.4e-32 140.6 100 68.0
QL02p062809 Quercus lobata HOM05D003753 ORTHO05D005081 6.4e-32 140.6 101 67.3
PGR102G2098 Punica granatum HOM05D003753 ORTHO05D005081 8.4e-32 140.2 100 72.0
FAN23G2028 Fragaria x ananassa HOM05D003753 ORTHO05D005081 1.1e-31 139.8 99 67.7
TAR624G1221 Trochodendron aralioides HOM05D003753 ORTHO05D005081 1.1e-31 139.8 101 65.3
vmacro06286 Vaccinium macrocarpon HOM05D003753 ORTHO05D005081 1.1e-31 139.8 101 67.3
FvH4_1g07300 Fragaria vesca HOM05D003753 ORTHO05D005081 1.4e-31 139.4 99 67.7
FAN19G2460 Fragaria x ananassa HOM05D003753 ORTHO05D005081 1.4e-31 139.4 99 67.7
FAN26G1206 Fragaria x ananassa HOM05D003753 ORTHO05D005081 1.4e-31 139.4 99 67.7
FAN26G3279 Fragaria x ananassa HOM05D003753 ORTHO05D005081 1.4e-31 139.4 99 67.7
FAN28G1000 Fragaria x ananassa HOM05D003753 ORTHO05D005081 1.4e-31 139.4 99 67.7
Lsat_1_v5_gn_2_117981 Lactuca sativa HOM05D003753 ORTHO05D005081 1.4e-31 139.4 99 70.7
TAR626G1816 Trochodendron aralioides HOM05D003753 ORTHO05D005081 1.4e-31 139.4 98 66.3
DCAR_011977 Daucus carota HOM05D003753 ORTHO05D005081 3.2e-31 138.3 101 68.3
ECA236G2053 Erigeron canadensis HOM05D003753 ORTHO05D005081 3.2e-31 138.3 101 67.3
PSO210G0422 Papaver somniferum HOM05D003753 ORTHO05D005081 3.2e-31 138.3 95 67.4
MSTRG.18971 Avicennia marina HOM05D003753 ORTHO05D005081 4.2e-31 137.9 69 85.5
PSO210G4643 Papaver somniferum HOM05D003753 ORTHO05D005081 4.2e-31 137.9 95 68.4
Sed0009681 Sechium edule HOM05D003753 ORTHO05D005081 4.2e-31 137.9 101 64.4
ClCG03G015660 Citrullus lanatus HOM05D003753 ORTHO05D005081 9.3e-31 136.7 100 68.0
MD15G1206400 Malus domestica HOM05D003753 ORTHO05D005081 9.3e-31 136.7 100 65.0
Cpa.g.sc83.92 Carica papaya HOM05D003753 ORTHO05D005081 1.2e-30 136.3 101 64.4
Atru.chr7.1581 Acer truncatum HOM05D003753 ORTHO05D005081 1.6e-30 136.0 102 63.7
Sed0008570 Sechium edule HOM05D003753 ORTHO05D005081 1.6e-30 136.0 100 68.0
CDE08G0675 Ceratophyllum demersum HOM05D003753 ORTHO05D005081 2.1e-30 135.6 98 65.3
VMungo0251G1718 Vigna mungo HOM05D003753 ORTHO05D005081 2.1e-30 135.6 101 65.3
PSO541G3309 Papaver somniferum HOM05D003753 ORTHO05D005081 2.7e-30 135.2 97 67.0
Potri.007G094000 Populus trichocarpa HOM05D003753 ORTHO05D005081 2.7e-30 135.2 96 65.6
Sc18g0002060 Simmondsia chinensis HOM05D003753 ORTHO05D005081 2.7e-30 135.2 104 60.6
Glyma.08G104700 Glycine max HOM05D003753 ORTHO05D005081 3.5e-30 134.8 96 65.6
Phvul.008G006800 Phaseolus vulgaris HOM05D003753 ORTHO05D005081 3.5e-30 134.8 98 65.3
Rhsim03G0233000 Rhododendron simsii HOM05D003753 ORTHO05D005081 3.5e-30 134.8 101 64.4
Glyma.05G147800 Glycine max HOM05D003753 ORTHO05D005081 1.0e-29 133.3 96 64.6
Hund06681 Selenicereus undatus HOM05D003753 ORTHO05D005081 1.8e-29 132.5 101 63.4
CDE06G0756 Ceratophyllum demersum HOM05D003753 ORTHO05D005081 2.3e-29 132.1 98 64.3
Lalb_Chr07g0187091 Lupinus albus HOM05D003753 ORTHO05D005081 3.0e-29 131.7 99 65.7
Gohir.D07G010900 Gossypium hirsutum HOM05D003753 ORTHO05D005081 3.9e-29 131.3 101 63.4
Gorai.001G011300 Gossypium raimondii HOM05D003753 ORTHO05D005081 3.9e-29 131.3 101 63.4
HanXRQChr06g0178531 Helianthus annuus HOM05D003753 ORTHO05D005081 3.9e-29 131.3 100 64.0
A09p12430 Brassica napus HOM05D003753 ORTHO05D005081 5.1e-29 131.0 97 68.0
BraA09t36888Z Brassica rapa HOM05D003753 ORTHO05D005081 5.1e-29 131.0 97 68.0
COL.COLO4_18208 Corchorus olitorius HOM05D003753 ORTHO05D005081 5.1e-29 131.0 101 63.4
arahy.Tifrunner.gnm1.ann1.D26Z0K Arachis hypogaea HOM05D003753 ORTHO05D005081 6.7e-29 130.6 99 65.7
arahy.Tifrunner.gnm1.ann1.JW8PS1 Arachis hypogaea HOM05D003753 ORTHO05D005081 6.7e-29 130.6 99 65.7
CSS0033183 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 6.7e-29 130.6 67 83.6
HanXRQChr11g0321581 Helianthus annuus HOM05D003753 ORTHO05D005081 8.7e-29 130.2 100 63.0
Aqoxy7G01225 Aquilegia oxysepala HOM05D003753 ORTHO05D005081 1.1e-28 129.8 100 61.0
BcaC04g22845 Brassica carinata HOM05D003753 ORTHO05D005081 1.1e-28 129.8 98 64.3
C09p14710 Brassica napus HOM05D003753 ORTHO05D005081 1.1e-28 129.8 98 64.3
BolC9t54374H Brassica oleracea HOM05D003753 ORTHO05D005081 1.1e-28 129.8 98 64.3
CiPaw.08G138800 Carya illinoinensis HOM05D003753 ORTHO05D005081 1.1e-28 129.8 100 63.0
Lsat_1_v5_gn_8_87641 Lactuca sativa HOM05D003753 ORTHO05D005081 1.5e-28 129.4 68 80.9
EL10Ac8g19226 Beta vulgaris HOM05D003753 ORTHO05D005081 1.9e-28 129.0 101 59.4
Duzib150G1398 Durio zibethinus HOM05D003753 ORTHO05D005081 1.9e-28 129.0 101 63.4
Duzib187G1746 Durio zibethinus HOM05D003753 ORTHO05D005081 1.9e-28 129.0 101 63.4
BcaB08g34872 Brassica carinata HOM05D003753 ORTHO05D005081 4.3e-28 127.9 97 64.9
Ciclev10010770m.g Citrus clementina HOM05D003753 ORTHO05D005081 4.3e-28 127.9 95 63.2
Peaxi162Scf00083g00426 Petunia axillaris HOM05D003753 ORTHO05D005081 4.3e-28 127.9 89 71.9
Gohir.A07G010600 Gossypium hirsutum HOM05D003753 ORTHO05D005081 5.6e-28 127.5 101 61.4
Sabra05G0061300 Salix brachista HOM05D003753 ORTHO05D005081 5.6e-28 127.5 93 64.5
Sp3g32920 Schrenkiella parvula HOM05D003753 ORTHO05D005081 7.4e-28 127.1 90 64.4
Thecc.09G090200 Theobroma cacao HOM05D003753 ORTHO05D005081 7.4e-28 127.1 101 62.4
vmacro23429 Vaccinium macrocarpon HOM05D003753 ORTHO05D005081 9.6e-28 126.7 66 78.8
A09p59260 Brassica napus HOM05D003753 ORTHO05D005081 1.3e-27 126.3 97 64.9
BraA09t41308Z Brassica rapa HOM05D003753 ORTHO05D005081 1.3e-27 126.3 97 64.9
Lj4g0022105 Lotus japonicus HOM05D003753 ORTHO05D005081 1.6e-27 125.9 101 61.4
MBI06_g38945_MAGBIO Magnolia biondii HOM05D003753 ORTHO05D020828 1.6e-27 125.9 75 74.7
Carub.0003s3383 Capsella rubella HOM05D003753 ORTHO05D005081 2.1e-27 125.6 97 62.9
CsaV3_1G040350 Cucumis sativus L. HOM05D003753 ORTHO05D005081 2.1e-27 125.6 100 63.0
Eucgr.C03892 Eucalyptus grandis HOM05D003753 ORTHO05D005081 2.1e-27 125.6 67 79.1
Lj4g0004391 Lotus japonicus HOM05D003753 ORTHO05D005081 2.1e-27 125.6 69 76.8
Psat7g005120 Pisum sativum HOM05D003753 ORTHO05D005081 2.1e-27 125.6 69 78.3
MELO3C015462.2 Cucumis melo HOM05D003753 ORTHO05D005081 2.8e-27 125.2 100 62.0
Ah.13g077350 Amaranthus hybridus HOM05D003753 ORTHO05D005081 3.7e-27 124.8 104 57.7
Sabra07G0077800 Salix brachista HOM05D003753 ORTHO05D005081 4.8e-27 124.4 96 61.5
SalBow6G3352 Salvia bowleyana HOM05D003753 ORTHO05D020828 4.8e-27 124.4 102 58.8
FAN02G0879 Fragaria x ananassa HOM05D003753 ORTHO05D005081 8.1e-27 123.6 82 67.1
Actinidia29885 Actinidia chinensis HOM05D003753 ORTHO05D005081 1.4e-26 122.9 112 58.9
AT2G19540 Arabidopsis thaliana HOM05D003753 ORTHO05D005081 1.4e-26 122.9 87 64.4
Ca_18022_v3 Cicer arietinum L. HOM05D003753 ORTHO05D005081 1.4e-26 122.9 69 75.4
HPP92_012451 Vanilla planifolia HOM05D003753 ORTHO05D005081 1.8e-26 122.5 95 64.2
CARHR109970 Cardamine hirsuta HOM05D003753 ORTHO05D005081 2.4e-26 122.1 95 61.1
CiPaw.08G159100 Carya illinoinensis HOM05D003753 ORTHO05D005081 2.4e-26 122.1 97 60.8
Medtr8g080700 Medicago truncatula HOM05D003753 ORTHO05D005081 4.0e-26 121.3 98 59.2
Aa31LG8G16560 Aethionema arabicum HOM05D003753 ORTHO05D005081 5.3e-26 120.9 96 62.5
SEGI_14219 Sequoiadendron giganteum HOM05D003753 ORTHO05D005081 6.9e-26 120.6 96 63.5
Thhalv10022672m.g Eutrema salsugineum HOM05D003753 ORTHO05D005081 1.2e-25 119.8 94 59.6
Medtr5g024090 Medicago truncatula HOM05D003753 ORTHO05D005081 1.2e-25 119.8 93 58.1
TPR.G17083 Trifolium pratense HOM05D003753 ORTHO05D005081 1.5e-25 119.4 66 77.3
THA.LOC104814615 Tarenaya hassleriana HOM05D003753 ORTHO05D005081 2.6e-25 118.6 67 71.6
BcaC07g41247 Brassica carinata HOM05D003753 ORTHO05D005081 3.4e-25 118.2 98 58.2
C08p42530 Brassica napus HOM05D003753 ORTHO05D005081 3.4e-25 118.2 98 58.2
BolC8t51814H Brassica oleracea HOM05D003753 ORTHO05D005081 3.4e-25 118.2 98 58.2
Potri.005G074400 Populus trichocarpa HOM05D003753 ORTHO05D005081 4.5e-25 117.9 98 58.2
unitig_699.g19554 Utricularia gibba HOM05D003753 ORTHO05D005081 4.5e-25 117.9 64 76.6
FAN23G0946 Fragaria x ananassa HOM05D003753 ORTHO05D005081 5.8e-25 117.5 82 63.4
SEGI_09916 Sequoiadendron giganteum HOM05D003753 ORTHO05D005081 1.7e-24 115.9 96 58.3
SEGI_28493 Sequoiadendron giganteum HOM05D003753 ORTHO05D005081 1.7e-24 115.9 96 58.3
AUR62033985 Chenopodium quinoa HOM05D003753 ORTHO05D005081 2.2e-24 115.5 97 56.7
AagrBONN_evm.TU.Sc2ySwM_344.2490 Anthoceros agrestis HOM05D003753 ORTHO05D005081 4.9e-24 114.4 97 54.6
AUR62027495 Chenopodium quinoa HOM05D003753 ORTHO05D005081 4.9e-24 114.4 98 55.1
CSS0046684 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 1.4e-23 112.8 98 60.2
Os11g0134500 Oryza sativa ssp. japonica HOM05D003753 ORTHO05D005081 4.2e-23 111.3 90 57.8
ATR0807G172 Amborella trichopoda HOM05D003753 ORTHO05D005081 1.6e-22 109.4 95 54.7
SMO169G0114 Selaginella moellendorffii HOM05D003753 ORTHO05D005081 3.5e-22 108.2 70 64.3
BraA07t27911Z Brassica rapa HOM05D003753 ORTHO05D005081 4.6e-22 107.8 81 64.2
Zm00001eb163470 Zea mays HOM05D003753 ORTHO05D005081 6.0e-22 107.5 93 58.1
Zm00001eb354080 Zea mays HOM05D003753 ORTHO05D005081 1.1e-20 103.2 67 68.7
SMO270G0139 Selaginella moellendorffii HOM05D003753 ORTHO05D005081 1.5e-20 102.8 82 56.1
Mapoly0090s0067 Marchantia polymorpha HOM05D003753 ORTHO05D005081 1.9e-20 102.4 65 63.1
Pp3c12_16950 Physcomitrium patens HOM05D003753 ORTHO05D005081 4.8e-19 97.8 97 51.5
Cre17.g724850 Chlamydomonas reinhardtii HOM05D003753 ORTHO05D005081 5.8e-17 90.9 75 48.0
Lj7A675T45 Lonicera japonica HOM05D003753 ORTHO05D020828 2.9e-16 88.6 71 63.4
Lalb_Chr13g0294391 Lupinus albus HOM05D003753 ORTHO05D005081 1.4e-15 86.3 78 62.8
MCO09G725 Micromonas commoda HOM05D003753 ORTHO05D005081 3.2e-15 85.1 79 46.8
PRCOL_00005408 Prasinoderma coloniale HOM05D003753 ORTHO05D005081 1.3e-11 73.2 88 44.3
SGA_v2.0_scaffold85G26676 Striga asiatica HOM05D000860 ORTHO05D003230 1.3e-11 73.2 59 66.1
CBR_g58801 Chara braunii HOM05D003753 ORTHO05D005081 1.6e-11 72.8 50 62.0
MD02G1077800 Malus domestica HOM05D003753 ORTHO05D005081 2.2e-11 72.4 120 40.8
Cfa024003 Carpinus fangiana HOM05D003753 ORTHO05D123424 2.0e-09 65.9 61 50.8
A07p01230 Brassica napus HOM05D003753 ORTHO05D005081 1.4e-07 59.7 31 77.4


User provided reference genes

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