Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g012590 Solanum pennellii HOM05D003467 ORTHO05D004220 2.9e-271 937.9 467 100.0
Nitab4.5_0001796g0090 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.3e-125 454.1 480 55.8
Nitab4.5_0009709g0060 Nicotiana tabacum HOM05D003467 ORTHO05D004220 3.6e-120 436.0 449 57.0
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 1.2e-107 394.4 253 80.6
Solyc00g500228.1 Solanum lycopersicum HOM05D003467 ORTHO05D004220 1.2e-107 394.4 203 97.0
Sed0025530 Sechium edule HOM05D003467 ORTHO05D004220 1.9e-105 387.1 253 79.4
Solyc00g500103.1 Solanum lycopersicum HOM05D003467 ORTHO05D004220 2.1e-104 383.6 194 97.4
Peaxi162Scf00197g00034 Petunia axillaris HOM05D003467 ORTHO05D004220 3.4e-102 376.3 208 93.3
Dinv06674 Davidia involucrata HOM05D003467 ORTHO05D004220 3.1e-100 369.8 267 75.7
CAN.G134.20 Capsicum annuum HOM05D003467 ORTHO05D004220 4.1e-92 342.8 196 86.7
Lj2C1229G12 Lonicera japonica HOM05D003467 ORTHO05D004220 5.4e-92 342.4 200 88.5
CARHR282930 Cardamine hirsuta HOM05D003467 ORTHO05D004220 1.6e-91 340.9 266 71.1
Nitab4.5_0004471g0080 Nicotiana tabacum HOM05D003467 ORTHO05D004220 5.0e-90 335.9 198 86.9
BNapus_Darmor_BZH_scaffold_234p00200 Brassica napus HOM05D003467 ORTHO05D004220 1.5e-89 334.3 266 70.3
BolSC28t60347H Brassica oleracea HOM05D003467 ORTHO05D004220 1.5e-89 334.3 266 70.3
BraSC48t46273Z Brassica rapa HOM05D003467 ORTHO05D004220 1.5e-89 334.3 266 70.3
Sp3g25530 Schrenkiella parvula HOM05D003467 ORTHO05D004220 1.5e-89 334.3 266 70.3
AL3G44370 Arabidopsis lyrata HOM05D003467 ORTHO05D004220 7.2e-89 332.0 266 69.9
ClCG11G007180 Citrullus lanatus HOM05D003467 ORTHO05D004220 7.2e-89 332.0 202 84.2
Nn1g10002 Nelumbo nucifera HOM05D003467 ORTHO05D004220 2.8e-88 330.1 200 85.5
AT2G07715 Arabidopsis thaliana HOM05D003467 ORTHO05D004220 4.7e-88 329.3 266 69.5
CANSAT16G0031 Cannabis sativa HOM05D003467 ORTHO05D004220 4.0e-87 326.2 200 85.5
Actinidia34926 Actinidia chinensis HOM05D003467 ORTHO05D004220 2.0e-86 323.9 200 85.0
CAN.G502.14 Capsicum annuum HOM05D003467 ORTHO05D004220 3.4e-86 323.2 203 81.8
Thhalv10013769m.g Eutrema salsugineum HOM05D003467 ORTHO05D004220 3.4e-86 323.2 267 68.9
SGA_v2.0_scaffold255G45505 Striga asiatica HOM05D003467 ORTHO05D004220 3.4e-86 323.2 197 85.3
MBI16_g09480_MAGBIO Magnolia biondii HOM05D003467 ORTHO05D004220 4.3e-81 306.2 193 81.3
Nitab4.5_0001152g0330 Nicotiana tabacum HOM05D003467 ORTHO05D004220 5.6e-81 305.8 196 82.1
SabraMtG0006300 Salix brachista HOM05D003467 ORTHO05D004220 4.0e-79 299.7 207 79.7
Peaxi162Scf00507g00009 Petunia axillaris HOM05D003467 ORTHO05D004220 1.7e-77 294.3 194 79.4
Rhsim07G0055600 Rhododendron simsii HOM05D003467 ORTHO05D004220 1.7e-77 294.3 202 80.2
Sopen06g007650 Solanum pennellii HOM05D003467 ORTHO05D004220 2.2e-77 293.9 167 89.2
CsaV3_UNG208190 Cucumis sativus L. HOM05D003467 ORTHO05D004220 1.1e-76 291.6 204 76.5
BcaC08g43711 Brassica carinata HOM05D003467 ORTHO05D004220 1.9e-73 280.8 207 73.9
ATMG00560 Arabidopsis thaliana HOM05D003467 ORTHO05D004220 9.5e-73 278.5 205 73.7
C09p21580 Brassica napus HOM05D003467 ORTHO05D004220 1.1e-71 275.0 237 66.2
SHI36699 Sapria himalayana HOM05D003467 ORTHO05D004220 6.8e-71 272.3 196 74.5
SHI52008 Sapria himalayana HOM05D003467 ORTHO05D004220 1.2e-70 271.6 196 74.0
BraSC77t46654Z Brassica rapa HOM05D003467 ORTHO05D004220 2.6e-70 270.4 249 63.9
Aa31csc239G20 Aethionema arabicum HOM05D003467 ORTHO05D004220 4.1e-68 263.1 213 70.0
CAN.G1.25 Capsicum annuum HOM05D003467 ORTHO05D004220 2.1e-67 260.8 155 86.5
Nitab4.5_0002635g0050 Nicotiana tabacum HOM05D003467 ORTHO05D004220 4.6e-67 259.6 215 69.8
unitig_87.g27965 Utricularia gibba HOM05D003467 ORTHO05D004220 6.0e-67 259.2 191 75.9
MBI05_g05352_MAGBIO Magnolia biondii HOM05D003467 ORTHO05D004220 1.3e-66 258.1 206 68.9
SHI50250 Sapria himalayana HOM05D003467 ORTHO05D004220 1.3e-66 258.1 190 73.2
SHI37961 Sapria himalayana HOM05D003467 ORTHO05D004220 1.5e-65 254.6 193 73.1
SHI40343 Sapria himalayana HOM05D003467 ORTHO05D004220 1.5e-65 254.6 193 73.1
SHI42055 Sapria himalayana HOM05D003467 ORTHO05D004220 1.5e-65 254.6 193 73.1
SHI52974 Sapria himalayana HOM05D003467 ORTHO05D004220 1.5e-65 254.6 193 73.1
Oeu039080.1 Olea europaea HOM05D003467 ORTHO05D004220 1.9e-65 254.2 159 87.4
SHI53305 Sapria himalayana HOM05D003467 ORTHO05D004220 7.3e-65 252.3 193 72.0
CDE02G2877 Ceratophyllum demersum HOM05D003467 ORTHO05D004220 6.2e-64 249.2 419 42.7
SHI36967 Sapria himalayana HOM05D003467 ORTHO05D004220 7.6e-62 242.3 166 79.5
BolC4t23495H Brassica oleracea HOM05D003467 ORTHO05D004220 6.4e-61 239.2 180 72.8
SHI51351 Sapria himalayana HOM05D003467 ORTHO05D004220 1.1e-60 238.4 193 67.9
SHI52601 Sapria himalayana HOM05D003467 ORTHO05D004220 1.1e-60 238.4 193 67.9
SHI37556 Sapria himalayana HOM05D003467 ORTHO05D004220 5.4e-60 236.1 193 68.9
SHI38192 Sapria himalayana HOM05D003467 ORTHO05D004220 9.2e-60 235.3 193 67.4
SHI53641 Sapria himalayana HOM05D003467 ORTHO05D004220 6.0e-59 232.6 193 65.8
SHI37866 Sapria himalayana HOM05D003467 ORTHO05D004220 7.8e-59 232.3 198 67.2
PGSC0003DMG401008792 Solanum tuberosum HOM05D003467 ORTHO05D004220 2.3e-58 230.7 147 81.0
Nitab4.5_0009703g0010 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.5e-57 228.0 132 87.9
SHI36996 Sapria himalayana HOM05D003467 ORTHO05D004220 1.6e-56 224.6 185 68.1
SHI37886 Sapria himalayana HOM05D003467 ORTHO05D004220 1.1e-55 221.9 193 63.7
SHI48358 Sapria himalayana HOM05D003467 ORTHO05D004220 2.4e-55 220.7 185 67.6
SHI37209 Sapria himalayana HOM05D003467 ORTHO05D004220 5.2e-55 219.5 193 61.7
Ciclev10005397m.g Citrus clementina HOM05D003467 ORTHO05D004220 8.9e-55 218.8 218 61.5
Nitab4.5_0012067g0060 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.2e-51 208.4 207 59.4
SHI38317 Sapria himalayana HOM05D003467 ORTHO05D004220 1.6e-51 208.0 193 62.7
SHI43968 Sapria himalayana HOM05D003467 ORTHO05D004220 2.7e-51 207.2 154 75.3
Nitab4.5_0006602g0040 Nicotiana tabacum HOM05D003467 ORTHO05D004220 3.5e-51 206.8 128 83.6
SHI52927 Sapria himalayana HOM05D003467 ORTHO05D004220 3.5e-51 206.8 193 62.7
BolC9t55063H Brassica oleracea HOM05D003467 ORTHO05D004220 1.0e-50 205.3 164 70.7
Sed0002506 Sechium edule HOM05D003467 ORTHO05D004220 3.0e-50 203.8 196 60.2
Aqoxy4G00639 Aquilegia oxysepala HOM05D003467 ORTHO05D004220 3.9e-50 203.4 180 62.2
SHI46915 Sapria himalayana HOM05D003467 ORTHO05D004220 2.5e-49 200.7 193 61.1
SHI52904 Sapria himalayana HOM05D003467 ORTHO05D004220 1.6e-48 198.0 193 60.6
Manes.02G141800 Manihot esculenta HOM05D003467 ORTHO05D004220 3.8e-45 186.8 188 54.8
SGA_v2.0_scaffold507G52535 Striga asiatica HOM05D003467 ORTHO05D004220 8.4e-45 185.7 167 64.7
CARHR288290 Cardamine hirsuta HOM05D003467 ORTHO05D004220 1.5e-41 174.9 139 70.5
SHI38047 Sapria himalayana HOM05D003467 ORTHO05D004220 3.3e-41 173.7 193 57.0
SHI37879 Sapria himalayana HOM05D003467 ORTHO05D004220 7.4e-41 172.6 193 58.0
SHI38898 Sapria himalayana HOM05D003467 ORTHO05D004220 2.8e-40 170.6 184 55.4
Nitab4.5_0020169g0010 Nicotiana tabacum HOM05D012309 ORTHO05D014791 1.5e-38 164.9 83 95.2
Manes.01G181900 Manihot esculenta HOM05D003467 ORTHO05D004220 3.4e-38 163.7 174 55.2
CDE02G4335 Ceratophyllum demersum HOM05D003467 ORTHO05D004220 3.8e-37 160.2 201 50.2
SHI52074 Sapria himalayana HOM05D003467 ORTHO05D004220 6.4e-37 159.5 193 53.4
SHI47986 Sapria himalayana HOM05D003467 ORTHO05D004220 1.9e-36 157.9 134 67.2
SHI34611 Sapria himalayana HOM05D003467 ORTHO05D004220 6.7e-34 149.4 137 65.0
SHI38985 Sapria himalayana HOM05D003467 ORTHO05D004220 1.9e-33 147.9 129 65.9
Atru.chr10.2291 Acer truncatum HOM05D003467 ORTHO05D004220 1.6e-32 144.8 140 64.3
BcaC05g26882 Brassica carinata HOM05D003467 ORTHO05D004220 1.4e-31 141.7 150 57.3
SHI42501 Sapria himalayana HOM05D003467 ORTHO05D004220 1.4e-31 141.7 155 60.0
SHI51177 Sapria himalayana HOM05D003467 ORTHO05D004220 2.6e-30 137.5 193 48.2
Solyc02g092280.1 Solanum lycopersicum HOM05D003467 ORTHO05D004220 2.6e-30 137.5 79 83.5
SHI54334 Sapria himalayana HOM05D003467 ORTHO05D004220 4.5e-30 136.7 114 65.8
COL.COLO4_18957 Corchorus olitorius HOM05D003467 ORTHO05D004220 5.8e-30 136.3 200 50.5
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.3e-29 135.2 102 65.7
SalBow7G2519 Salvia bowleyana HOM05D003467 ORTHO05D004220 3.8e-29 133.7 199 47.2
SalBow7G4829 Salvia bowleyana HOM05D003467 ORTHO05D004220 3.8e-29 133.7 199 47.2
ATR0661G353 Amborella trichopoda HOM05D003467 ORTHO05D004220 4.9e-29 133.3 227 43.2
HanXRQChr14g0459301 Helianthus annuus HOM05D003467 ORTHO05D004220 8.4e-29 132.5 191 43.5
SHI44578 Sapria himalayana HOM05D003467 ORTHO05D004220 1.4e-28 131.7 89 75.3
Sc16g0002730 Simmondsia chinensis HOM05D003467 ORTHO05D004220 4.2e-28 130.2 208 41.8
SalBow1G2953 Salvia bowleyana HOM05D003467 ORTHO05D004220 3.0e-26 124.0 188 47.3
SHI38986 Sapria himalayana HOM05D003467 ORTHO05D004220 2.5e-25 120.9 89 73.0
Lsat_1_v5_gn_6_32340 Lactuca sativa HOM05D003467 ORTHO05D004220 1.3e-24 118.6 194 41.2
SalBow1G5399 Salvia bowleyana HOM05D003467 ORTHO05D004220 4.8e-24 116.7 117 59.8
SalBow1G6425 Salvia bowleyana HOM05D003467 ORTHO05D004220 4.8e-24 116.7 236 39.8
CAN.G676.26 Capsicum annuum HOM05D003467 ORTHO05D004220 8.2e-24 115.9 83 74.7
EL10Ac6g15561 Beta vulgaris HOM05D003467 ORTHO05D004220 5.3e-23 113.2 205 40.0
Nitab4.5_0001152g0380 Nicotiana tabacum HOM05D012309 ORTHO05D011202 6.9e-23 112.8 75 78.7
SHI38786 Sapria himalayana HOM05D003467 ORTHO05D004220 6.9e-23 112.8 103 64.1
Migut.N03022 Erythranthe guttata HOM05D003467 ORTHO05D004220 1.2e-22 112.1 216 40.3
CAN.G1126.3 Capsicum annuum HOM05D012309 ORTHO05D014791 1.5e-22 111.7 58 89.7
SHI34612 Sapria himalayana HOM05D003467 ORTHO05D004220 1.5e-22 111.7 74 77.0
CsaV3_UNG208180 Cucumis sativus L. HOM05D012309 ORTHO05D020467 2.0e-22 111.3 63 85.7
CAN.G72.15 Capsicum annuum HOM05D012309 ORTHO05D014791 7.6e-22 109.4 57 91.2
Lsat_1_v5_gn_1_109980 Lactuca sativa HOM05D003467 ORTHO05D004220 7.6e-22 109.4 201 36.8
SHI37826 Sapria himalayana HOM05D003467 ORTHO05D004220 1.0e-21 109.0 79 72.2
CAN.G1321.12 Capsicum annuum HOM05D012309 ORTHO05D014791 1.3e-21 108.6 57 87.7
Hund13975 Selenicereus undatus HOM05D003467 ORTHO05D004220 1.4e-20 105.1 178 39.9
CAN.G502.13 Capsicum annuum HOM05D012309 ORTHO05D014791 1.9e-20 104.8 57 86.0
Nitab4.5_0008578g0020 Nicotiana tabacum HOM05D003467 ORTHO05D004220 9.3e-20 102.4 60 86.7
SHI04750 Sapria himalayana HOM05D000330 ORTHO05D000209 1.6e-19 101.7 190 38.9
Sopen06g007660 Solanum pennellii HOM05D008609 ORTHO05D014791 1.6e-19 101.7 54 88.9
SHI44577 Sapria himalayana HOM05D003467 ORTHO05D004220 4.6e-19 100.1 62 82.3
Lsat_1_v5_gn_5_114100 Lactuca sativa HOM05D003467 ORTHO05D004220 3.9e-18 97.1 119 44.5
CAN.G1447.9 Capsicum annuum HOM05D003467 ORTHO05D004220 5.1e-18 96.7 54 87.0
Lsat_1_v5_gn_8_11861 Lactuca sativa HOM05D003467 ORTHO05D004220 5.1e-18 96.7 191 35.1
BcaC05g26874 Brassica carinata HOM05D003467 ORTHO05D004220 1.5e-17 95.1 195 40.0
Lsat_1_v5_gn_2_118881 Lactuca sativa HOM05D003467 ORTHO05D004220 1.5e-17 95.1 202 33.7
SHI43969 Sapria himalayana HOM05D003467 ORTHO05D004220 1.5e-17 95.1 63 74.6
CAN.G72.9 Capsicum annuum HOM05D012309 ORTHO05D014791 2.5e-17 94.4 57 78.9
ECA238G4840 Erigeron canadensis HOM05D000460 ORTHO05D000333 2.5e-17 94.4 191 37.7
AUR62004052 Chenopodium quinoa HOM05D003467 ORTHO05D004220 1.3e-16 92.0 143 39.2
TAR381G1488 Trochodendron aralioides HOM05D012309 ORTHO05D014791 1.3e-16 92.0 54 83.3
CAN.G108.65 Capsicum annuum HOM05D012309 ORTHO05D014791 1.6e-16 91.7 55 78.2
AUR62007567 Chenopodium quinoa HOM05D003467 ORTHO05D004220 1.6e-16 91.7 144 38.9
ATR0660G011 Amborella trichopoda HOM05D003467 ORTHO05D004220 4.8e-16 90.1 65 72.3
Zm00001eb180350 Zea mays HOM05D000540 ORTHO05D000681 2.4e-15 87.8 230 33.5
ATR0660G010 Amborella trichopoda HOM05D003467 ORTHO05D004220 3.1e-15 87.4 107 50.5
Ah.04g149890 Amaranthus hybridus HOM05D003467 ORTHO05D004220 2.0e-14 84.7 142 35.9
Nitab4.5_0000978g0040 Nicotiana tabacum HOM05D003467 ORTHO05D004220 7.7e-14 82.8 53 81.1
SHI36997 Sapria himalayana HOM05D003467 ORTHO05D004220 2.9e-13 80.9 49 83.7
SGA_v2.0_scaffold48G17845 Striga asiatica HOM05D003467 ORTHO05D004220 2.9e-13 80.9 56 75.0
unitig_22.g5752 Utricularia gibba HOM05D003467 ORTHO05D004220 4.2e-12 77.0 113 47.8
Nitab4.5_0004099g0010 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.4e-10 72.0 58 69.0
Phvul.008G005400 Phaseolus vulgaris HOM05D003467 ORTHO05D004220 1.8e-10 71.6 92 51.1
SalBow1G8419 Salvia bowleyana HOM05D003467 ORTHO05D004220 3.9e-10 70.5 150 38.0
Glyma.08G365200 Glycine max HOM05D003467 ORTHO05D004220 6.7e-10 69.7 90 45.6
Lj2C1229G13 Lonicera japonica HOM05D012309 ORTHO05D014791 1.5e-09 68.6 38 84.2
ATR0661G063 Amborella trichopoda HOM05D012309 ORTHO05D014791 2.0e-09 68.2 50 68.0
VMungo1383G2739 Vigna mungo HOM05D003467 ORTHO05D004220 3.3e-09 67.4 92 46.7
Glyma.07G149151 Glycine max HOM05D003467 ORTHO05D004220 5.7e-09 66.6 90 44.4
Lsat_1_v5_gn_7_88480 Lactuca sativa HOM05D003467 ORTHO05D004220 9.7e-09 65.9 102 39.2
MELO3C020548.2 Cucumis melo HOM05D003467 ORTHO05D004220 1.3e-08 65.5 42 76.2
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 1.3e-08 65.5 61 59.0
Ca_04056_v3 Cicer arietinum L. HOM05D003467 ORTHO05D004220 2.2e-08 64.7 88 40.9
Lsat_1_v5_gn_4_83901 Lactuca sativa HOM05D003467 ORTHO05D004220 8.2e-08 62.8 121 35.5
Lalb_Chr04g0257431 Lupinus albus HOM05D003467 ORTHO05D004220 1.4e-07 62.0 89 42.7
TPR.G9704 Trifolium pratense HOM05D003467 ORTHO05D004220 1.8e-07 61.6 81 44.4
SHI42502 Sapria himalayana HOM05D003467 ORTHO05D004220 3.1e-07 60.8 43 74.4
Lsat_1_v5_gn_9_26841 Lactuca sativa HOM05D003467 ORTHO05D004220 5.3e-07 60.1 76 42.1
CAN.G267.15 Capsicum annuum HOM05D003467 ORTHO05D004220 2.6e-06 57.8 33 87.9
Lsat_1_v5_gn_3_107140 Lactuca sativa HOM05D003467 ORTHO05D004220 3.4e-06 57.4 101 37.6
Rhsim02G0011900 Rhododendron simsii HOM05D006881 ORTHO05D008423 4.5e-06 57.0 38 78.9


User provided reference genes

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