Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g009560.4 Solanum lycopersicum HOM05D006955 ORTHO05D008701 2.3e-88 329.3 224 100.0
Sopen05g005370 Solanum pennellii HOM05D006955 ORTHO05D008701 2.3e-88 329.3 224 100.0
CAN.G656.28 Capsicum annuum HOM05D006955 ORTHO05D008701 4.9e-83 311.6 224 95.1
Peaxi162Scf00382g00128 Petunia axillaris HOM05D006955 ORTHO05D008701 5.0e-80 301.6 222 69.8
Nitab4.5_0004895g0100 Nicotiana tabacum HOM05D006955 ORTHO05D008701 6.6e-80 301.2 222 70.7
Actinidia14871 Actinidia chinensis HOM05D006955 ORTHO05D008701 1.7e-72 276.6 222 64.0
Actinidia16638 Actinidia chinensis HOM05D006955 ORTHO05D008701 5.0e-72 275.0 222 64.4
Migut.L01079 Erythranthe guttata HOM05D006955 ORTHO05D008701 2.5e-71 272.7 222 63.1
COL.COLO4_07900 Corchorus olitorius HOM05D006955 ORTHO05D008701 4.3e-71 271.9 222 68.0
Dinv21110 Davidia involucrata HOM05D006955 ORTHO05D008701 4.3e-71 271.9 222 62.6
CSS0004457 Camellia sinensis var. sinensis HOM05D006955 ORTHO05D008701 9.5e-71 270.8 222 62.6
THA.LOC104805251 Tarenaya hassleriana HOM05D006955 ORTHO05D008701 9.5e-71 270.8 222 66.7
Lj3C1017T15 Lonicera japonica HOM05D006955 ORTHO05D008701 2.1e-70 269.6 222 62.2
TPR.G38250 Trifolium pratense HOM05D006955 ORTHO05D008701 1.1e-69 267.3 222 60.4
Ca_28012_v3 Cicer arietinum L. HOM05D006955 ORTHO05D008701 1.4e-69 266.9 222 60.8
Sp1g11840 Schrenkiella parvula HOM05D006955 ORTHO05D008701 1.8e-69 266.5 222 59.9
AT1G13330 Arabidopsis thaliana HOM05D006955 ORTHO05D008701 2.3e-69 266.2 222 69.8
Cc11_g10340 Coffea canephora HOM05D006955 ORTHO05D008701 3.1e-69 265.8 222 62.2
Carub.0001s1306 Capsella rubella HOM05D006955 ORTHO05D008701 5.2e-69 265.0 222 76.1
AL1G25090 Arabidopsis lyrata HOM05D006955 ORTHO05D008701 6.8e-69 264.6 222 68.0
Glyma.08G260400 Glycine max HOM05D006955 ORTHO05D008701 6.8e-69 264.6 222 60.4
CARHR013710 Cardamine hirsuta HOM05D006955 ORTHO05D008701 8.9e-69 264.2 222 65.8
Thhalv10008697m.g Eutrema salsugineum HOM05D006955 ORTHO05D008701 1.2e-68 263.8 222 65.8
Gohir.A13G053700 Gossypium hirsutum HOM05D006955 ORTHO05D008701 2.0e-68 263.1 222 60.8
Gohir.D13G071200 Gossypium hirsutum HOM05D006955 ORTHO05D008701 2.0e-68 263.1 222 60.8
Gorai.013G081500 Gossypium raimondii HOM05D006955 ORTHO05D008701 2.0e-68 263.1 222 60.8
Phvul.002G082400 Phaseolus vulgaris HOM05D006955 ORTHO05D008701 2.0e-68 263.1 222 59.0
Potri.008G118800 Populus trichocarpa HOM05D006955 ORTHO05D008701 2.0e-68 263.1 222 61.3
Rhsim12G0082400 Rhododendron simsii HOM05D006955 ORTHO05D008701 2.6e-68 262.7 232 59.5
Lj2g0004168 Lotus japonicus HOM05D006955 ORTHO05D008701 3.4e-68 262.3 222 59.0
Lalb_Chr17g0342031 Lupinus albus HOM05D006955 ORTHO05D008701 5.8e-68 261.5 222 59.0
Oeu033300.1 Olea europaea HOM05D006955 ORTHO05D008701 5.8e-68 261.5 255 55.7
Haze_17460 Corylus avellana HOM05D006955 ORTHO05D008701 9.8e-68 260.8 222 62.2
Nitab4.5_0003823g0050 Nicotiana tabacum HOM05D006955 ORTHO05D008701 9.8e-68 260.8 200 67.5
TWI79G1443 Tripterygium wilfordii HOM05D006955 ORTHO05D008701 9.8e-68 260.8 222 59.0
Nn3g17799 Nelumbo nucifera HOM05D006955 ORTHO05D008701 1.3e-67 260.4 222 59.9
Aa31LG1G1480 Aethionema arabicum HOM05D006955 ORTHO05D008701 1.7e-67 260.0 222 68.0
C05p09970 Brassica napus HOM05D006955 ORTHO05D008701 1.7e-67 260.0 222 68.0
MSTRG.13515 Avicennia marina HOM05D006955 ORTHO05D008701 2.2e-67 259.6 222 60.8
Ciclev10032679m.g Citrus clementina HOM05D006955 ORTHO05D008701 2.9e-67 259.2 221 71.0
SGA_v2.0_scaffold124G33553 Striga asiatica HOM05D006955 ORTHO05D008701 2.9e-67 259.2 222 59.5
vmacro01371 Vaccinium macrocarpon HOM05D006955 ORTHO05D008701 3.7e-67 258.8 262 54.2
arahy.Tifrunner.gnm1.ann1.FS5FM4 Arachis hypogaea HOM05D006955 ORTHO05D008701 4.9e-67 258.5 222 59.0
CANSAT56G1672 Cannabis sativa HOM05D006955 ORTHO05D008701 4.9e-67 258.5 221 60.2
Sabra08G0090200 Salix brachista HOM05D006955 ORTHO05D008701 4.9e-67 258.5 222 59.9
arahy.Tifrunner.gnm1.ann1.0188KY Arachis hypogaea HOM05D006955 ORTHO05D008701 1.1e-66 257.3 222 59.0
arahy.Tifrunner.gnm1.ann1.5TE0FE Arachis hypogaea HOM05D006955 ORTHO05D008701 1.1e-66 257.3 222 59.0
MELO3C012231.2 Cucumis melo HOM05D006955 ORTHO05D008701 1.4e-66 256.9 222 59.5
ECA233G4186 Erigeron canadensis HOM05D006955 ORTHO05D008701 1.4e-66 256.9 222 58.6
Psat2g093000 Pisum sativum HOM05D006955 ORTHO05D008701 1.4e-66 256.9 222 59.0
Hund25084 Selenicereus undatus HOM05D006955 ORTHO05D008701 1.9e-66 256.5 222 62.6
A06p08430 Brassica napus HOM05D006955 ORTHO05D008701 2.4e-66 256.1 222 67.6
BraA06t24039Z Brassica rapa HOM05D006955 ORTHO05D008701 2.4e-66 256.1 222 67.6
Medtr5g055150 Medicago truncatula HOM05D006955 ORTHO05D008701 4.1e-66 255.4 222 59.5
Cpa.g.sc1.190 Carica papaya HOM05D006955 ORTHO05D008701 5.4e-66 255.0 222 68.0
CsaV3_5G034170 Cucumis sativus L. HOM05D006955 ORTHO05D008701 5.4e-66 255.0 222 59.0
RcHm_v2.0_Chr4g0435501 Rosa chinensis HOM05D006955 ORTHO05D008701 5.4e-66 255.0 222 59.0
SalBow8G1483 Salvia bowleyana HOM05D006955 ORTHO05D008701 7.1e-66 254.6 223 59.6
Sed0012161 Sechium edule HOM05D006955 ORTHO05D008701 7.1e-66 254.6 222 59.9
HanXRQChr08g0214231 Helianthus annuus HOM05D006955 ORTHO05D008701 9.2e-66 254.2 222 70.7
QL01p043991 Quercus lobata HOM05D006955 ORTHO05D008701 9.2e-66 254.2 222 71.2
Aqoxy3G00330 Aquilegia oxysepala HOM05D006955 ORTHO05D008701 1.2e-65 253.8 222 58.6
BcaC05g25057 Brassica carinata HOM05D006955 ORTHO05D008701 1.2e-65 253.8 222 67.1
BcaC05g25064 Brassica carinata HOM05D006955 ORTHO05D008701 1.2e-65 253.8 222 67.1
BolC5t29739H Brassica oleracea HOM05D006955 ORTHO05D008701 1.2e-65 253.8 222 67.1
Ah.02g127040 Amaranthus hybridus HOM05D006955 ORTHO05D008701 2.1e-65 253.1 222 62.2
GSVIVG01011919001 Vitis vinifera HOM05D006955 ORTHO05D008701 3.5e-65 252.3 222 59.0
EL10Ac6g14443 Beta vulgaris HOM05D006955 ORTHO05D008701 7.8e-65 251.1 222 62.6
Sc11g0003240 Simmondsia chinensis HOM05D006955 ORTHO05D008701 1.0e-64 250.8 222 58.6
Sc11g0003300 Simmondsia chinensis HOM05D006955 ORTHO05D008701 1.0e-64 250.8 222 58.6
Manes.14G100100 Manihot esculenta HOM05D006955 ORTHO05D008701 3.0e-64 249.2 212 61.8
Prupe.1G308500 Prunus persica HOM05D006955 ORTHO05D008701 3.0e-64 249.2 222 56.3
PGR119G2132 Punica granatum HOM05D006955 ORTHO05D008701 3.0e-64 249.2 222 61.3
PSO017G5158 Papaver somniferum HOM05D006955 ORTHO05D008701 5.1e-64 248.4 222 57.7
VMungo1215G2393 Vigna mungo HOM05D006955 ORTHO05D008701 5.1e-64 248.4 228 56.1
Eucgr.G02335 Eucalyptus grandis HOM05D006955 ORTHO05D008701 6.6e-64 248.1 222 58.1
AUR62002894 Chenopodium quinoa HOM05D006955 ORTHO05D008701 1.1e-63 247.3 222 57.2
Glyma.01G083100 Glycine max HOM05D006955 ORTHO05D008701 1.1e-63 247.3 223 57.4
TAR622G0049 Trochodendron aralioides HOM05D006955 ORTHO05D008701 1.1e-63 247.3 222 68.9
AUR62035251 Chenopodium quinoa HOM05D006955 ORTHO05D008701 1.9e-63 246.5 222 72.1
Duzib251G0691 Durio zibethinus HOM05D006955 ORTHO05D008701 1.2e-62 243.8 222 65.8
PSO478G1614 Papaver somniferum HOM05D006955 ORTHO05D008701 1.2e-62 243.8 222 56.3
Atru.chr11.1296 Acer truncatum HOM05D006955 ORTHO05D008701 2.8e-62 242.7 222 55.9
ATR0665G168 Amborella trichopoda HOM05D006955 ORTHO05D008701 1.1e-61 240.7 223 55.6
ClCG05G022860 Citrullus lanatus HOM05D006955 ORTHO05D008701 3.1e-61 239.2 236 55.5
MD16G1044800 Malus domestica HOM05D006955 ORTHO05D008701 6.8e-61 238.0 222 62.2
DCAR_023669 Daucus carota HOM05D006955 ORTHO05D008701 2.6e-60 236.1 205 59.5
Lsat_1_v5_gn_8_38900 Lactuca sativa HOM05D006955 ORTHO05D008701 4.4e-60 235.3 207 58.9
FAN12G1265 Fragaria x ananassa HOM05D006955 ORTHO05D008701 5.8e-60 235.0 232 61.6
TAR629G1122 Trochodendron aralioides HOM05D006955 ORTHO05D008701 7.6e-60 234.6 247 51.0
FAN07G1824 Fragaria x ananassa HOM05D006955 ORTHO05D008701 1.3e-59 233.8 218 56.0
MD13G1044000 Malus domestica HOM05D006955 ORTHO05D008701 2.2e-59 233.0 222 61.3
FAN12G2251 Fragaria x ananassa HOM05D006955 ORTHO05D008701 2.9e-59 232.6 218 62.8
FAN22G1329 Fragaria x ananassa HOM05D006955 ORTHO05D008701 4.9e-59 231.9 239 53.6
BolC5t29750H Brassica oleracea HOM05D006955 ORTHO05D008701 2.7e-57 226.1 205 57.6
CDE05G2755 Ceratophyllum demersum HOM05D006955 ORTHO05D008701 7.3e-55 218.0 224 58.5
CiPaw.15G005500 Carya illinoinensis HOM05D006955 ORTHO05D008701 1.2e-54 217.2 195 65.1
Thecc.02G357700 Theobroma cacao HOM05D006955 ORTHO05D008701 3.1e-53 212.6 194 57.2
Zm00001eb216450 Zea mays HOM05D006955 ORTHO05D008701 7.1e-50 201.4 223 53.4
SHI33974 Sapria himalayana HOM05D006955 ORTHO05D008701 1.2e-49 200.7 198 52.0
HPP92_011092 Vanilla planifolia HOM05D006955 ORTHO05D008701 5.1e-48 195.3 215 47.0
Mapoly0015s0151 Marchantia polymorpha HOM05D006955 ORTHO05D008701 1.3e-46 190.7 221 45.7
HPP92_011108 Vanilla planifolia HOM05D006955 ORTHO05D008701 1.1e-45 187.6 207 46.4
SEGI_38068 Sequoiadendron giganteum HOM05D006955 ORTHO05D008701 4.0e-45 185.7 202 48.0
CAN.G884.17 Capsicum annuum HOM05D000526 ORTHO05D000956 9.0e-45 184.5 192 57.3
CBR_g3130 Chara braunii HOM05D006955 ORTHO05D008701 7.6e-44 181.4 213 51.6
SMO203G0092 Selaginella moellendorffii HOM05D006955 ORTHO05D008701 6.4e-43 178.3 207 44.9
PGSC0003DMG402012965 Solanum tuberosum HOM05D006955 ORTHO05D008701 6.2e-38 161.8 141 62.4
CAN.G706.23 Capsicum annuum HOM05D006955 ORTHO05D008701 1.4e-37 160.6 159 58.5
Pp3c23_21510 Physcomitrium patens HOM05D006955 ORTHO05D008701 5.3e-29 132.1 187 37.4
unitig_27.g25246 Utricularia gibba HOM05D002984 ORTHO05D003561 1.1e-23 114.4 75 77.3
unitig_27.g25247 Utricularia gibba HOM05D006955 ORTHO05D008701 1.9e-23 113.6 78 65.4
Potri.010G127101 Populus trichocarpa HOM05D006955 ORTHO05D008701 1.6e-22 110.5 94 61.7
Cre06.g284400 Chlamydomonas reinhardtii HOM05D006955 ORTHO05D008701 6.1e-17 92.0 218 45.0
MCO07G460 Micromonas commoda HOM05D006955 ORTHO05D008701 4.6e-09 65.9 197 25.9
Medtr4g007850 Medicago truncatula HOM05D003710 ORTHO05D258575 2.0e-07 60.5 92 42.4
PRCOL_00000208 Prasinoderma coloniale HOM05D006955 ORTHO05D008701 2.8e-06 56.6 86 39.5
Medtr5g055130 Medicago truncatula HOM05D002518 ORTHO05D002630 4.8e-06 55.8 94 42.6


User provided reference genes

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