Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g005130 Solanum pennellii HOM05D006920 ORTHO05D005895 0.0e+00 1497.6 833 100.0
PGSC0003DMG400014565 Solanum tuberosum HOM05D006920 ORTHO05D005895 0.0e+00 1372.8 834 91.1
Nitab4.5_0005104g0050 Nicotiana tabacum HOM05D006920 ORTHO05D005895 2.2e-274 949.1 884 63.8
Nitab4.5_0008077g0010 Nicotiana tabacum HOM05D006920 ORTHO05D005895 1.7e-269 932.9 880 63.9
CAN.G610.81 Capsicum annuum HOM05D006920 ORTHO05D005895 2.4e-252 875.9 883 62.1
Peaxi162Scf00028g00415 Petunia axillaris HOM05D006920 ORTHO05D005895 1.9e-204 716.8 908 52.1
Solyc05g009350.4 Solanum lycopersicum HOM05D006920 ORTHO05D005895 2.6e-198 696.4 442 94.6
Cc06_g11560 Coffea canephora HOM05D006920 ORTHO05D005895 1.5e-68 265.4 895 31.6
Oeu064585.1 Olea europaea HOM05D006920 ORTHO05D005895 1.2e-54 219.2 740 32.3
MSTRG.19500 Avicennia marina HOM05D006920 ORTHO05D005895 3.4e-49 201.1 919 28.5
Dinv42334 Davidia involucrata HOM05D006920 ORTHO05D005895 6.3e-43 180.3 640 31.9
Migut.J00581 Erythranthe guttata HOM05D006920 ORTHO05D005895 1.2e-41 176.0 885 28.2
Oeu000320.3 Olea europaea HOM05D006920 ORTHO05D005895 1.3e-40 172.6 580 29.3
SalBow6G1737 Salvia bowleyana HOM05D006920 ORTHO05D005895 1.7e-40 172.2 883 28.7
Actinidia25244 Actinidia chinensis HOM05D006920 ORTHO05D005895 2.2e-40 171.8 912 28.0
Hma1.2p1_0169F.1_g074930 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 1.1e-39 169.5 748 30.6
Dinv36779 Davidia involucrata HOM05D006920 ORTHO05D005895 2.5e-39 168.3 501 34.7
SGA_v2.0_scaffold4G02308 Striga asiatica HOM05D006920 ORTHO05D005895 3.2e-39 167.9 872 29.1
TAR383G0297 Trochodendron aralioides HOM05D006920 ORTHO05D005895 2.0e-33 148.7 870 25.9
Rhsim05G0018400 Rhododendron simsii HOM05D006920 ORTHO05D005895 4.5e-33 147.5 846 28.3
DCAR_015050 Daucus carota HOM05D006920 ORTHO05D005895 3.2e-31 141.4 930 26.5
Hma1.2p1_0476F.1_g160830 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 3.0e-29 134.8 566 32.3
Nn6g35509 Nelumbo nucifera HOM05D006920 ORTHO05D005895 4.0e-29 134.4 645 29.1
Prupe.7G207100 Prunus persica HOM05D006920 ORTHO05D005895 5.2e-29 134.0 649 30.0
TWI63G0676 Tripterygium wilfordii HOM05D006920 ORTHO05D005895 2.2e-27 128.6 915 27.2
DCAR_031337 Daucus carota HOM05D006920 ORTHO05D005895 4.8e-27 127.5 949 25.9
AT5G56930 Arabidopsis thaliana HOM05D010535 ORTHO05D005895 3.1e-26 124.8 428 32.9
Ciclev10007413m.g Citrus clementina HOM05D006920 ORTHO05D005895 4.1e-26 124.4 917 26.4
TPR.G14423 Trifolium pratense HOM05D006920 ORTHO05D005895 4.1e-26 124.4 232 41.4
Sc08g0008560 Simmondsia chinensis HOM05D006920 ORTHO05D005895 7.0e-26 123.6 168 41.7
MD15G1209300 Malus domestica HOM05D006920 ORTHO05D005895 2.7e-25 121.7 437 33.0
RcHm_v2.0_Chr3g0459471 Rosa chinensis HOM05D006920 ORTHO05D005895 7.7e-25 120.2 678 27.0
Aa31LG11G5930 Aethionema arabicum HOM05D010535 ORTHO05D005895 1.3e-24 119.4 194 43.3
GSVIVG01015184001 Vitis vinifera HOM05D006920 ORTHO05D005895 1.3e-24 119.4 656 30.5
Carub.0008s1741 Capsella rubella HOM05D010535 ORTHO05D005895 2.2e-24 118.6 227 41.4
Hund06669 Selenicereus undatus HOM05D006920 ORTHO05D005895 2.2e-24 118.6 179 48.0
Sed0019505 Sechium edule HOM05D006920 ORTHO05D005895 3.8e-24 117.9 904 27.0
Aqoxy7G02156 Aquilegia oxysepala HOM05D006920 ORTHO05D005895 9.4e-23 113.2 177 47.5
Manes.01G178200 Manihot esculenta HOM05D006920 ORTHO05D005895 2.7e-22 111.7 402 33.3
Sp6g18630 Schrenkiella parvula HOM05D010535 ORTHO05D005895 2.7e-22 111.7 357 32.2
Atru.chr7.1617 Acer truncatum HOM05D006920 ORTHO05D005895 6.1e-22 110.5 917 26.5
Sed0003269 Sechium edule HOM05D006920 ORTHO05D005895 6.1e-22 110.5 584 27.1
HPP92_005499 Vanilla planifolia HOM05D006920 ORTHO05D005895 8.0e-22 110.2 210 36.7
AL8G32790 Arabidopsis lyrata HOM05D010535 ORTHO05D005895 4.0e-21 107.8 564 28.5
CANSAT56G3092 Cannabis sativa HOM05D006920 ORTHO05D005895 8.8e-21 106.7 598 30.4
ECA233G4205 Erigeron canadensis HOM05D006920 ORTHO05D005895 8.8e-21 106.7 409 32.5
Lj4A292T33 Lonicera japonica HOM05D006920 ORTHO05D005895 8.8e-21 106.7 388 33.0
RcHm_v2.0_Chr2g0093651 Rosa chinensis HOM05D006920 ORTHO05D005895 1.2e-20 106.3 565 28.5
MBI04_g34755_MAGBIO Magnolia biondii HOM05D006920 ORTHO05D005895 3.4e-20 104.8 461 29.9
unitig_699.g19418 Utricularia gibba HOM05D006920 ORTHO05D005895 7.5e-20 103.6 480 31.9
PSO063G3291 Papaver somniferum HOM05D006920 ORTHO05D005895 1.7e-19 102.4 220 41.4
Duzib150G1610 Durio zibethinus HOM05D006920 ORTHO05D005895 2.8e-19 101.7 681 29.7
FvH4_1g07770 Fragaria vesca HOM05D006920 ORTHO05D005895 2.8e-19 101.7 684 27.2
vmacro17256 Vaccinium macrocarpon HOM05D006920 ORTHO05D005895 2.8e-19 101.7 931 23.3
Gohir.A10G064850 Gossypium hirsutum HOM05D006920 ORTHO05D005895 3.7e-19 101.3 383 27.7
PSO384G1468 Papaver somniferum HOM05D006920 ORTHO05D005895 4.8e-19 100.9 220 40.0
Cfa003067 Carpinus fangiana HOM05D006920 ORTHO05D005895 1.1e-18 99.8 693 27.1
Haze_25928 Corylus avellana HOM05D006920 ORTHO05D005895 1.4e-18 99.4 964 24.4
FAN26G1238 Fragaria x ananassa HOM05D006920 ORTHO05D005895 1.4e-18 99.4 690 28.1
Medtr5g096500 Medicago truncatula HOM05D006920 ORTHO05D005895 1.4e-18 99.4 226 42.0
Thecc.09G086800 Theobroma cacao HOM05D006920 ORTHO05D005895 2.4e-18 98.6 811 26.9
FAN23G0431 Fragaria x ananassa HOM05D006920 ORTHO05D005895 3.1e-18 98.2 694 28.7
BraA02t05956Z Brassica rapa HOM05D010535 ORTHO05D005895 5.4e-18 97.4 143 49.0
FAN26G3372 Fragaria x ananassa HOM05D006920 ORTHO05D005895 7.0e-18 97.1 687 27.8
CDE04G1224 Ceratophyllum demersum HOM05D006920 ORTHO05D005895 1.2e-17 96.3 207 42.0
A02p08870 Brassica napus HOM05D010535 ORTHO05D005895 2.3e-16 92.0 317 34.1
FAN28G2753 Fragaria x ananassa HOM05D006920 ORTHO05D005895 2.3e-16 92.0 895 27.4
PSO832G2112 Papaver somniferum HOM05D006920 ORTHO05D005895 2.3e-16 92.0 231 41.1
ClCG11G016050 Citrullus lanatus HOM05D006920 ORTHO05D005895 3.8e-16 91.3 452 31.6
HanXRQChr05g0128971 Helianthus annuus HOM05D006920 ORTHO05D005895 3.8e-16 91.3 694 28.4
EL10Ac8g19187 Beta vulgaris HOM05D036879 ORTHO05D005895 6.6e-16 90.5 444 30.0
BcaC03g14196 Brassica carinata HOM05D010535 ORTHO05D005895 6.6e-16 90.5 501 29.7
C02p14780 Brassica napus HOM05D010535 ORTHO05D005895 6.6e-16 90.5 501 29.7
BolC2t07607H Brassica oleracea HOM05D010535 ORTHO05D005895 6.6e-16 90.5 501 29.7
CsaV3_4G027920 Cucumis sativus L. HOM05D006920 ORTHO05D005895 1.1e-15 89.7 854 25.3
Eucgr.C01704 Eucalyptus grandis HOM05D006920 ORTHO05D005895 2.5e-15 88.6 114 62.3
Glyma.14G213000 Glycine max HOM05D006920 ORTHO05D005895 2.5e-15 88.6 214 43.0
BcaB05g22299 Brassica carinata HOM05D010535 ORTHO05D005895 3.3e-15 88.2 212 31.1
Potri.006G148400 Populus trichocarpa HOM05D006920 ORTHO05D005895 3.3e-15 88.2 208 42.3
CDE06G2477 Ceratophyllum demersum HOM05D002968 ORTHO05D005895 4.2e-15 87.8 204 43.6
Migut.J00579 Erythranthe guttata HOM05D006920 ORTHO05D005895 4.2e-15 87.8 138 50.7
HanXRQChr03g0060321 Helianthus annuus HOM05D006920 ORTHO05D005895 5.5e-15 87.4 635 28.7
HanXRQChr10g0310341 Helianthus annuus HOM05D001214 ORTHO05D001029 5.5e-15 87.4 224 39.3
Thhalv10012834m.g Eutrema salsugineum HOM05D010535 ORTHO05D005895 9.5e-15 86.7 399 30.6
AUR62033943 Chenopodium quinoa HOM05D036879 ORTHO05D005895 1.6e-14 85.9 382 25.9
HanXRQChr14g0436791 Helianthus annuus HOM05D006920 ORTHO05D005895 2.1e-14 85.5 72 52.8
Psat5g132560 Pisum sativum HOM05D006920 ORTHO05D005895 8.0e-14 83.6 253 38.3
Gorai.009G032200 Gossypium raimondii HOM05D006920 ORTHO05D005895 1.4e-13 82.8 440 32.3
arahy.Tifrunner.gnm1.ann1.50MPSE Arachis hypogaea HOM05D006920 ORTHO05D005895 6.8e-13 80.5 126 48.4
Phvul.010G094400 Phaseolus vulgaris HOM05D006920 ORTHO05D005895 8.9e-13 80.1 233 38.2
Gohir.D05G032000 Gossypium hirsutum HOM05D006920 ORTHO05D005895 1.2e-12 79.7 439 32.3
QL02p062309 Quercus lobata HOM05D006920 ORTHO05D005895 1.2e-12 79.7 643 26.0
CARHR270670 Cardamine hirsuta HOM05D010535 ORTHO05D005895 2.0e-12 79.0 297 31.6
Lj6g0023447 Lotus japonicus HOM05D006920 ORTHO05D005895 3.4e-12 78.2 160 43.1
ATR0178G033 Amborella trichopoda HOM05D006920 ORTHO05D005895 4.4e-12 77.8 213 28.6
Gohir.A05G030600 Gossypium hirsutum HOM05D006920 ORTHO05D005895 7.5e-12 77.0 699 29.8
Lj3g0019860 Lotus japonicus HOM05D006920 ORTHO05D005895 7.5e-12 77.0 196 37.2
VMungo0331G1985 Vigna mungo HOM05D006920 ORTHO05D005895 9.8e-12 76.6 444 30.2
FAN19G0513 Fragaria x ananassa HOM05D006920 ORTHO05D005895 1.7e-11 75.9 913 24.0
Lalb_Chr25g0278561 Lupinus albus HOM05D006920 ORTHO05D005895 1.7e-11 75.9 434 30.6
Mapoly0131s0021 Marchantia polymorpha HOM05D006920 ORTHO05D005895 1.7e-11 75.9 134 44.8
PGR142G4106 Punica granatum HOM05D006920 ORTHO05D005895 1.7e-11 75.9 357 28.3
CiPaw.03G213600 Carya illinoinensis HOM05D006920 ORTHO05D005895 2.8e-11 75.1 687 26.3
SEGI_28908 Sequoiadendron giganteum HOM05D006920 ORTHO05D005895 3.7e-11 74.7 116 52.6
Aa31LG11G5970 Aethionema arabicum HOM05D010535 ORTHO05D005895 6.3e-11 73.9 295 29.5
Sabra06G0117400 Salix brachista HOM05D006920 ORTHO05D005895 8.3e-11 73.6 685 25.0
arahy.Tifrunner.gnm1.ann1.IGMF9F Arachis hypogaea HOM05D006920 ORTHO05D005895 1.1e-10 73.2 191 36.6
Aa31LG11G5940 Aethionema arabicum HOM05D010535 ORTHO05D005895 3.1e-10 71.6 254 30.7
Zm00001eb160100 Zea mays HOM05D006920 ORTHO05D005895 4.1e-10 71.2 207 38.6
AagrBONN_evm.TU.Sc2ySwM_228.2245 Anthoceros agrestis HOM05D006920 ORTHO05D005895 5.9e-09 67.4 115 48.7
ECA240G4801 Erigeron canadensis HOM05D006920 ORTHO05D005895 1.7e-08 65.9 62 51.6
Ah.12g064230 Amaranthus hybridus HOM05D006920 ORTHO05D005895 3.9e-08 64.7 36 75.0


User provided reference genes

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