Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g004430 Solanum pennellii HOM05D007245 ORTHO05D009049 4.5e-153 544.7 296 100.0
PGSC0003DMG400030518 Solanum tuberosum HOM05D007245 ORTHO05D009049 4.7e-150 534.6 296 97.6
CAN.G1489.19 Capsicum annuum HOM05D007245 ORTHO05D009049 1.8e-122 443.0 296 79.4
Nitab4.5_0005411g0120 Nicotiana tabacum HOM05D007245 ORTHO05D009049 1.6e-121 439.9 300 81.3
Nitab4.5_0005095g0010 Nicotiana tabacum HOM05D007245 ORTHO05D009049 1.1e-119 433.7 298 81.2
Peaxi162Scf00950g00032 Petunia axillaris HOM05D007245 ORTHO05D009049 7.5e-116 421.0 293 77.5
CSS0018621 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 5.4e-114 414.8 310 71.3
CSS0002235 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 1.6e-113 413.3 306 71.6
Cc09_g07550 Coffea canephora HOM05D007245 ORTHO05D009049 7.8e-113 411.0 302 73.5
Nn3g16217 Nelumbo nucifera HOM05D007245 ORTHO05D009049 1.5e-111 406.8 293 73.0
Hma1.2p1_0421F.1_g149920 Hydrangea macrophylla HOM05D007245 ORTHO05D009049 1.9e-111 406.4 308 70.5
Oeu050155.1 Olea europaea HOM05D007245 ORTHO05D009049 1.9e-111 406.4 300 74.0
Thecc.04G050800 Theobroma cacao HOM05D007245 ORTHO05D009049 4.3e-111 405.2 298 70.5
Oeu045577.1 Olea europaea HOM05D007245 ORTHO05D009049 2.1e-110 402.9 301 73.4
vmacro18400 Vaccinium macrocarpon HOM05D007245 ORTHO05D009049 3.6e-110 402.1 308 70.8
Dinv25610 Davidia involucrata HOM05D007245 ORTHO05D009049 6.2e-110 401.4 277 76.9
MSTRG.15573 Avicennia marina HOM05D007245 ORTHO05D009049 8.1e-110 401.0 299 72.6
Lsat_1_v5_gn_2_60460 Lactuca sativa HOM05D007245 ORTHO05D009049 3.1e-109 399.1 306 69.9
HanXRQChr09g0245251 Helianthus annuus HOM05D007245 ORTHO05D009049 2.6e-108 396.0 301 68.1
Haze_14957 Corylus avellana HOM05D007245 ORTHO05D009049 3.4e-108 395.6 305 70.8
Gohir.A11G062100 Gossypium hirsutum HOM05D007245 ORTHO05D009049 3.4e-108 395.6 298 68.5
Dinv33262 Davidia involucrata HOM05D007245 ORTHO05D009049 7.5e-108 394.4 275 74.9
Actinidia37711 Actinidia chinensis HOM05D007245 ORTHO05D009049 1.7e-107 393.3 280 73.9
TAR629G1424 Trochodendron aralioides HOM05D007245 ORTHO05D009049 6.4e-107 391.3 299 68.9
Lj7P619T29 Lonicera japonica HOM05D007245 ORTHO05D009049 1.4e-106 390.2 307 68.4
ECA238G1127 Erigeron canadensis HOM05D007245 ORTHO05D009049 3.2e-106 389.0 301 67.4
Duzib147G1224 Durio zibethinus HOM05D007245 ORTHO05D009049 4.1e-106 388.7 298 68.5
Manes.11G073800 Manihot esculenta HOM05D007245 ORTHO05D009049 7.1e-106 387.9 298 70.5
SGA_v2.0_scaffold47G17641 Striga asiatica HOM05D007245 ORTHO05D009049 3.5e-105 385.6 304 69.4
Atru.chr6.2722 Acer truncatum HOM05D007245 ORTHO05D009049 6.0e-105 384.8 304 68.4
Aqoxy2G01225 Aquilegia oxysepala HOM05D007245 ORTHO05D009049 1.1e-103 380.6 302 67.5
Migut.K01486 Erythranthe guttata HOM05D007245 ORTHO05D009049 2.1e-102 376.3 306 69.0
MELO3C014761.2 Cucumis melo HOM05D007245 ORTHO05D009049 3.6e-102 375.6 313 66.5
ClCG05G012490 Citrullus lanatus HOM05D007245 ORTHO05D009049 1.1e-101 374.0 313 65.8
SalBow7G3959 Salvia bowleyana HOM05D007245 ORTHO05D009049 1.8e-101 373.2 304 66.8
Potri.002G237200 Populus trichocarpa HOM05D007245 ORTHO05D009049 5.2e-101 371.7 303 68.3
Rhsim08G0037800 Rhododendron simsii HOM05D007245 ORTHO05D009049 1.2e-100 370.5 309 68.0
CsaV3_3G020030 Cucumis sativus L. HOM05D007245 ORTHO05D009049 2.6e-100 369.4 311 65.3
MD17G1004200 Malus domestica HOM05D007245 ORTHO05D009049 2.6e-100 369.4 310 65.8
TWI32G1326 Tripterygium wilfordii HOM05D007245 ORTHO05D009049 4.4e-100 368.6 301 66.1
MD09G1001100 Malus domestica HOM05D007245 ORTHO05D009049 5.8e-100 368.2 310 65.8
Ciclev10016068m.g Citrus clementina HOM05D007245 ORTHO05D009049 1.7e-99 366.7 301 67.1
Duzib187G0347 Durio zibethinus HOM05D007245 ORTHO05D009049 2.2e-99 366.3 298 65.1
Gorai.007G071400 Gossypium raimondii HOM05D007245 ORTHO05D009049 8.4e-99 364.4 272 68.4
PSO017G6414 Papaver somniferum HOM05D007245 ORTHO05D009049 8.4e-99 364.4 302 67.5
Sed0013025 Sechium edule HOM05D007245 ORTHO05D009049 8.4e-99 364.4 303 64.4
PSO478G0086 Papaver somniferum HOM05D007245 ORTHO05D009049 1.1e-98 364.0 300 67.7
FvH4_6g31080 Fragaria vesca HOM05D007245 ORTHO05D009049 3.2e-98 362.5 303 67.0
TAR374G0050 Trochodendron aralioides HOM05D000179 ORTHO05D009049 3.2e-98 362.5 295 66.4
Gohir.D11G065900 Gossypium hirsutum HOM05D007245 ORTHO05D009049 4.1e-98 362.1 272 68.0
RcHm_v2.0_Chr2g0137761 Rosa chinensis HOM05D007245 ORTHO05D009049 5.4e-98 361.7 302 67.2
CiPaw.03G000500 Carya illinoinensis HOM05D007245 ORTHO05D009049 9.2e-98 360.9 301 67.4
FAN05G2831 Fragaria x ananassa HOM05D007245 ORTHO05D009049 9.2e-98 360.9 303 66.7
RcHm_v2.0_Chr2g0176701 Rosa chinensis HOM05D007245 ORTHO05D009049 1.2e-97 360.5 304 65.5
Prupe.7G011800 Prunus persica HOM05D007245 ORTHO05D009049 3.5e-97 359.0 309 64.4
CARHR199540 Cardamine hirsuta HOM05D007245 ORTHO05D009049 4.6e-97 358.6 310 61.6
QL02p068579 Quercus lobata HOM05D007245 ORTHO05D009049 8.6e-96 354.4 276 69.9
CANSAT64G0979 Cannabis sativa HOM05D007245 ORTHO05D009049 2.5e-95 352.8 308 63.0
Lalb_Chr24g0402921 Lupinus albus HOM05D007245 ORTHO05D009049 3.3e-95 352.4 305 64.3
Carub.0006s1208 Capsella rubella HOM05D007245 ORTHO05D009049 4.7e-94 348.6 306 60.8
AT5G13890 Arabidopsis thaliana HOM05D007245 ORTHO05D009049 6.2e-94 348.2 307 59.9
AL6G24530 Arabidopsis lyrata HOM05D007245 ORTHO05D009049 1.8e-93 346.7 307 59.9
Thhalv10014197m.g Eutrema salsugineum HOM05D007245 ORTHO05D009049 4.0e-93 345.5 303 61.1
Sp6g30110 Schrenkiella parvula HOM05D007245 ORTHO05D009049 1.5e-92 343.6 302 61.3
Cpa.g.sc70.41 Carica papaya HOM05D007245 ORTHO05D009049 4.4e-92 342.0 311 62.1
C09p63210 Brassica napus HOM05D007245 ORTHO05D009049 5.8e-92 341.7 302 60.6
BolC9t59157H Brassica oleracea HOM05D007245 ORTHO05D009049 5.8e-92 341.7 302 60.6
BcaC04g19069 Brassica carinata HOM05D007245 ORTHO05D009049 9.9e-92 340.9 302 60.6
BraA10t44512Z Brassica rapa HOM05D007245 ORTHO05D009049 9.9e-92 340.9 304 59.9
A10p24470 Brassica napus HOM05D007245 ORTHO05D009049 1.3e-91 340.5 304 59.9
THA.LOC104822428 Tarenaya hassleriana HOM05D007245 ORTHO05D009049 6.4e-91 338.2 303 61.4
BcaC04g24245 Brassica carinata HOM05D007245 ORTHO05D009049 2.4e-90 336.3 306 60.1
SHI23073 Sapria himalayana HOM05D000105 ORTHO05D000023 5.4e-90 335.1 297 60.9
SGA_v2.0_scaffold34G13684 Striga asiatica HOM05D007245 ORTHO05D009049 7.1e-90 334.7 304 63.2
Aa31LG11G15470 Aethionema arabicum HOM05D007245 ORTHO05D009049 9.3e-90 334.3 303 60.7
PGR142G1730 Punica granatum HOM05D007245 ORTHO05D009049 1.7e-88 330.1 307 59.9
CDE06G2711 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 2.3e-88 329.7 297 58.6
Glyma.19G106200 Glycine max HOM05D007245 ORTHO05D009049 1.6e-86 323.6 303 60.4
Phvul.001G099200 Phaseolus vulgaris HOM05D007245 ORTHO05D009049 2.1e-86 323.2 303 60.1
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 2.8e-86 322.8 286 62.2
DCAR_000961 Daucus carota HOM05D007245 ORTHO05D009049 8.1e-86 321.2 307 58.3
Sed0008898 Sechium edule HOM05D007245 ORTHO05D009049 4.0e-85 318.9 302 57.6
Manes.04G095000 Manihot esculenta HOM05D007245 ORTHO05D009049 7.6e-84 314.7 298 60.4
ATR0582G351 Amborella trichopoda HOM05D007245 ORTHO05D009049 3.5e-81 305.8 297 55.9
VMungo1383G3535 Vigna mungo HOM05D007245 ORTHO05D009049 1.1e-79 300.8 303 55.4
unitig_0.g2407 Utricularia gibba HOM05D007245 ORTHO05D009049 6.9e-77 291.6 273 59.7
MBI11_g03703_MAGBIO Magnolia biondii HOM05D007245 ORTHO05D009049 9.0e-77 291.2 307 54.1
Sc03g0005330 Simmondsia chinensis HOM05D007245 ORTHO05D009049 2.6e-76 289.7 297 54.5
Sabra02G0180800 Salix brachista HOM05D007245 ORTHO05D009049 1.2e-73 280.8 303 54.5
Medtr7g084610 Medicago truncatula HOM05D007245 ORTHO05D009049 1.9e-71 273.5 303 51.8
Lj1g0022763 Lotus japonicus HOM05D007245 ORTHO05D009049 4.8e-70 268.9 304 52.6
TPR.G31664 Trifolium pratense HOM05D007245 ORTHO05D009049 5.3e-69 265.4 302 52.0
CDE02G4767 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 5.8e-68 261.9 298 51.0
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 1.5e-60 237.3 165 74.5
Psat3g091920 Pisum sativum HOM05D007245 ORTHO05D009049 1.1e-53 214.5 221 57.9
HPP92_006441 Vanilla planifolia HOM05D007245 ORTHO05D009049 4.1e-53 212.6 318 46.5
Solyc05g008590.4 Solanum lycopersicum HOM05D007245 ORTHO05D009049 1.4e-50 204.1 105 100.0
SEGI_38415 Sequoiadendron giganteum HOM05D007245 ORTHO05D009049 3.6e-49 199.5 283 42.0
Ca_08230_v3 Cicer arietinum L. HOM05D007245 ORTHO05D009049 1.5e-47 194.1 169 62.7
GSVIVG01032953001 Vitis vinifera HOM05D007245 ORTHO05D009049 4.5e-44 182.6 157 64.3
SMO329G0038 Selaginella moellendorffii HOM05D007245 ORTHO05D009049 3.2e-42 176.4 296 36.8
Mapoly0103s0043 Marchantia polymorpha HOM05D007245 ORTHO05D009049 7.2e-42 175.3 289 36.7
AUR62042868 Chenopodium quinoa HOM05D007245 ORTHO05D009049 5.7e-39 165.6 124 70.2
Pp3c8_3270 Physcomitrium patens HOM05D007245 ORTHO05D009049 1.3e-38 164.5 296 35.5
AagrBONN_evm.TU.Sc2ySwM_369.440 Anthoceros agrestis HOM05D007245 ORTHO05D009049 7.7e-36 155.2 285 37.5
Glyma.16G045802 Glycine max HOM05D007245 ORTHO05D009049 7.5e-31 138.7 176 50.0
Pp3c4_3800 Physcomitrium patens HOM05D007245 ORTHO05D009049 2.2e-27 127.1 195 37.9
Pp3c10_19560 Physcomitrium patens HOM05D007245 ORTHO05D009049 2.5e-26 123.6 281 29.9
Migut.G00487 Erythranthe guttata HOM05D008048 ORTHO05D010199 7.5e-23 112.1 262 31.7
TAR362G0870 Trochodendron aralioides HOM05D008048 ORTHO05D010199 1.7e-22 110.9 286 29.7
Peaxi162Scf00033g00292 Petunia axillaris HOM05D008048 ORTHO05D010199 6.3e-22 109.0 252 30.2
Sed0019169 Sechium edule HOM05D008048 ORTHO05D010199 6.3e-22 109.0 252 30.6
Pp3c12_14270 Physcomitrium patens HOM05D007245 ORTHO05D009049 8.3e-22 108.6 209 30.6
PGSC0003DMG400017154 Solanum tuberosum HOM05D008048 ORTHO05D010199 1.4e-21 107.8 252 28.6
COL.COLO4_15948 Corchorus olitorius HOM05D008048 ORTHO05D010199 1.8e-21 107.5 267 28.5
MBI07_g18713_MAGBIO Magnolia biondii HOM05D008048 ORTHO05D010199 2.4e-21 107.1 267 27.0
Prupe.1G046300 Prunus persica HOM05D008048 ORTHO05D010199 1.2e-20 104.8 286 29.7
Sopen09g033500 Solanum pennellii HOM05D008048 ORTHO05D010199 2.0e-20 104.0 252 29.0
Lsat_1_v5_gn_6_68700 Lactuca sativa HOM05D008048 ORTHO05D010199 5.9e-20 102.4 264 29.9
TWI73G0695 Tripterygium wilfordii HOM05D008048 ORTHO05D010199 5.9e-20 102.4 266 30.8
MD16G1225000 Malus domestica HOM05D008048 ORTHO05D010199 7.7e-20 102.1 285 29.8
QL06p020732 Quercus lobata HOM05D008048 ORTHO05D010199 7.7e-20 102.1 290 27.9
CAN.G220.87 Capsicum annuum HOM05D008048 ORTHO05D010199 1.3e-19 101.3 267 28.5
Potri.008G170900 Populus trichocarpa HOM05D008048 ORTHO05D010199 5.0e-19 99.4 290 27.9
Cfa014771 Carpinus fangiana HOM05D008048 ORTHO05D010199 8.6e-19 98.6 289 28.0
Gohir.D01G023415 Gossypium hirsutum HOM05D008048 ORTHO05D010199 8.6e-19 98.6 267 27.7
Aqoxy5G00167 Aquilegia oxysepala HOM05D008048 ORTHO05D010199 1.5e-18 97.8 291 26.1
Gohir.A01G025700 Gossypium hirsutum HOM05D008048 ORTHO05D010199 1.5e-18 97.8 267 27.7
Sc25g0003600 Simmondsia chinensis HOM05D008048 ORTHO05D010199 1.5e-18 97.8 251 29.5
Haze_11446 Corylus avellana HOM05D008048 ORTHO05D010199 1.9e-18 97.4 267 28.1
Gorai.002G026300 Gossypium raimondii HOM05D008048 ORTHO05D010199 1.9e-18 97.4 267 27.3
SGA_v2.0_scaffold67G22704 Striga asiatica HOM05D008048 ORTHO05D010199 1.9e-18 97.4 235 32.8
Hma1.2p1_0385F.1_g141480 Hydrangea macrophylla HOM05D008048 ORTHO05D010199 2.5e-18 97.1 248 28.6
MD13G1219500 Malus domestica HOM05D008048 ORTHO05D010199 2.5e-18 97.1 267 28.1
Atru.chr4.1935 Acer truncatum HOM05D008048 ORTHO05D010199 4.2e-18 96.3 240 27.5
SalBow3G4414 Salvia bowleyana HOM05D008048 ORTHO05D010199 5.5e-18 95.9 258 30.6
Nn1g02915 Nelumbo nucifera HOM05D008048 ORTHO05D010199 7.2e-18 95.5 279 29.0
Dinv29814 Davidia involucrata HOM05D008048 ORTHO05D010199 9.5e-18 95.1 257 27.2
Duzib151G0082 Durio zibethinus HOM05D008048 ORTHO05D010199 1.2e-17 94.7 267 27.0
PGR004G1266 Punica granatum HOM05D008048 ORTHO05D010199 1.6e-17 94.4 272 30.5
Sabra08G0130700 Salix brachista HOM05D008048 ORTHO05D010199 2.1e-17 94.0 253 28.9
Potri.010G067000 Populus trichocarpa HOM05D008048 ORTHO05D010199 2.8e-17 93.6 290 26.2
MELO3C023035.2 Cucumis melo HOM05D008048 ORTHO05D010199 4.7e-17 92.8 252 27.4
CsaV3_2G012520 Cucumis sativus L. HOM05D008048 ORTHO05D010199 6.1e-17 92.4 249 27.3
Sabra10G0040500 Salix brachista HOM05D008048 ORTHO05D010199 6.1e-17 92.4 253 27.7
MSTRG.4161 Avicennia marina HOM05D008048 ORTHO05D010199 8.0e-17 92.0 268 27.6
RcHm_v2.0_Chr4g0394961 Rosa chinensis HOM05D008048 ORTHO05D010199 8.0e-17 92.0 262 29.0
Actinidia20832 Actinidia chinensis HOM05D008048 ORTHO05D010199 1.4e-16 91.3 246 28.9
TPR.G28751 Trifolium pratense HOM05D008048 ORTHO05D010199 1.8e-16 90.9 274 27.7
AUR62002183 Chenopodium quinoa HOM05D008048 ORTHO05D010199 2.3e-16 90.5 255 27.1
Psat6g106440 Pisum sativum HOM05D008048 ORTHO05D010199 2.3e-16 90.5 250 26.8
Manes.15G044600 Manihot esculenta HOM05D008048 ORTHO05D010199 3.0e-16 90.1 252 26.2
Thecc.04G262100 Theobroma cacao HOM05D008048 ORTHO05D010199 5.2e-16 89.4 229 28.4
Nitab4.5_0002709g0050 Nicotiana tabacum HOM05D008048 ORTHO05D010199 8.8e-16 88.6 208 29.8
Ciclev10005562m.g Citrus clementina HOM05D008048 ORTHO05D010199 1.5e-15 87.8 255 28.2
Oeu002289.1 Olea europaea HOM05D008048 ORTHO05D010199 1.5e-15 87.8 194 31.4
Psat0s2487g0040 Pisum sativum HOM05D007245 ORTHO05D009049 2.0e-15 87.4 70 68.6
Zm00001eb113550 Zea mays HOM05D007245 ORTHO05D009049 5.7e-15 85.9 194 34.5
Ah.04g155360 Amaranthus hybridus HOM05D008048 ORTHO05D010199 9.8e-15 85.1 289 25.6
Medtr1g045060 Medicago truncatula HOM05D008048 ORTHO05D010199 1.3e-14 84.7 272 27.6
Lalb_Chr19g0128481 Lupinus albus HOM05D008048 ORTHO05D010199 2.8e-14 83.6 275 26.2
FAN17G0666 Fragaria x ananassa HOM05D008048 ORTHO05D010199 1.4e-13 81.3 268 28.4
Os11g0534100 Oryza sativa ssp. japonica HOM05D007245 ORTHO05D009049 1.8e-13 80.9 138 37.7
FvH4_4g04390 Fragaria vesca HOM05D008048 ORTHO05D010199 4.1e-13 79.7 265 27.9
FAN22G2321 Fragaria x ananassa HOM05D008048 ORTHO05D010199 2.7e-12 77.0 265 28.3
ATR0736G121 Amborella trichopoda HOM05D008048 ORTHO05D010199 3.5e-12 76.6 161 31.1
Cpa.g.sc44.13 Carica papaya HOM05D008048 ORTHO05D010199 1.0e-11 75.1 192 30.2
Lj6g0004811 Lotus japonicus HOM05D008048 ORTHO05D010199 1.7e-11 74.3 239 28.0
GSVIVG01027901001 Vitis vinifera HOM05D008048 ORTHO05D010199 1.7e-11 74.3 171 32.7
Phvul.007G271100 Phaseolus vulgaris HOM05D008048 ORTHO05D010199 2.9e-11 73.6 295 24.7
Lj6P622T54 Lonicera japonica HOM05D008048 ORTHO05D010199 9.5e-10 68.6 96 34.4
CAN.G220.88 Capsicum annuum HOM05D008048 ORTHO05D010199 3.6e-09 66.6 103 36.9
DCAR_027338 Daucus carota HOM05D008048 ORTHO05D010199 3.6e-09 66.6 147 29.3
Rhsim04G0173500 Rhododendron simsii HOM05D008048 ORTHO05D010199 3.6e-09 66.6 240 25.0
CiPaw.02G108000 Carya illinoinensis HOM05D008048 ORTHO05D010199 4.7e-09 66.2 226 25.2
Pp3c5_8910 Physcomitrium patens HOM05D001193 ORTHO05D001016 4.7e-09 66.2 259 25.1
AagrBONN_evm.TU.Sc2ySwM_117.4111 Anthoceros agrestis HOM05D001193 ORTHO05D001016 6.1e-09 65.9 272 23.5
FAN12G0723 Fragaria x ananassa HOM05D008048 ORTHO05D010199 4.0e-08 63.2 104 33.7
FAN12G2845 Fragaria x ananassa HOM05D008048 ORTHO05D010199 4.0e-08 63.2 104 33.7
Mapoly0090s0038 Marchantia polymorpha HOM05D001193 ORTHO05D001016 4.0e-08 63.2 265 23.4
Glyma.20G086000 Glycine max HOM05D008048 ORTHO05D010199 1.5e-07 61.2 248 25.4
PSO135G0199 Papaver somniferum HOM05D001193 ORTHO05D001016 2.2e-06 57.4 209 24.4
AUR62027334 Chenopodium quinoa HOM05D001193 ORTHO05D001016 3.7e-06 56.6 279 24.4
Lj2g0013531 Lotus japonicus HOM05D001193 ORTHO05D001016 4.9e-06 56.2 265 23.4


User provided reference genes

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