Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 5.7e-300 1033.5 526 100.0
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 1.3e-296 1022.3 526 98.9
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 4.5e-289 997.3 543 94.5
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 3.5e-265 917.9 527 90.7
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 2.1e-254 882.1 477 92.9
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 7.5e-244 847.0 530 80.9
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 1.2e-241 839.7 533 80.3
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 1.1e-239 833.2 535 79.3
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 3.3e-239 831.6 526 79.7
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 3.6e-238 828.2 525 78.1
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 6.2e-238 827.4 526 79.3
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 8.1e-238 827.0 526 78.7
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 1.8e-237 825.9 530 79.2
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.8e-237 825.9 508 81.1
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 8.9e-237 823.5 522 79.1
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.2e-236 823.2 461 87.0
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 2.6e-236 822.0 527 78.2
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 4.4e-236 821.2 460 85.9
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 9.9e-236 820.1 475 83.2
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 9.9e-236 820.1 522 80.3
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 1.3e-235 819.7 541 76.3
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 1.3e-235 819.7 538 77.1
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.7e-235 819.3 521 77.7
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 1.7e-235 819.3 488 80.5
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 8.4e-235 817.0 521 77.5
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 3.5e-233 811.6 465 83.9
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 3.5e-233 811.6 529 76.9
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 7.8e-233 810.4 529 78.6
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.0e-232 810.1 463 85.5
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.0e-232 810.1 530 78.5
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.3e-232 809.7 524 79.0
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.7e-232 809.3 529 77.1
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 2.3e-232 808.9 485 82.1
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 2.3e-232 808.9 529 78.4
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 3.0e-232 808.5 524 77.7
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 3.0e-232 808.5 517 78.1
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 3.9e-232 808.1 530 77.0
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 8.7e-232 807.0 527 77.2
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.3e-231 805.1 529 76.9
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 7.3e-231 803.9 526 77.8
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 1.3e-230 803.1 525 78.1
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.6e-230 802.7 515 78.3
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 1.6e-230 802.7 521 78.3
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.6e-230 802.7 519 78.4
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 2.1e-230 802.4 525 76.8
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 2.1e-230 802.4 461 84.2
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.8e-230 802.0 463 83.4
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.1e-229 800.0 562 72.4
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 1.1e-229 800.0 468 82.7
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 6.9e-229 797.3 546 75.8
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 6.9e-229 797.3 513 77.2
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 9.0e-229 797.0 520 76.5
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 1.5e-228 796.2 517 76.8
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 2.0e-228 795.8 520 77.1
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 2.0e-228 795.8 464 82.5
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.4e-228 795.0 562 72.6
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 4.4e-228 794.7 547 74.0
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 4.4e-228 794.7 517 76.0
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 5.8e-228 794.3 471 81.3
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 5.8e-228 794.3 514 76.8
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 7.6e-228 793.9 527 74.8
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 7.6e-228 793.9 519 77.1
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.3e-227 793.1 462 82.9
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 4.9e-227 791.2 477 79.9
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 8.4e-227 790.4 461 82.6
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 2.4e-226 788.9 516 76.7
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 2.4e-226 788.9 497 77.3
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 4.2e-226 788.1 540 74.4
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 7.1e-226 787.3 528 74.4
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 9.3e-226 786.9 518 75.7
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 2.1e-225 785.8 519 75.9
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 3.5e-225 785.0 523 75.3
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 4.6e-225 784.6 517 76.4
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 6.0e-225 784.3 512 75.6
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 2.3e-224 782.3 461 81.1
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 3.9e-224 781.6 516 75.2
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 5.1e-224 781.2 520 75.8
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 5.1e-224 781.2 561 72.2
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 8.7e-224 780.4 550 72.4
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.1e-223 780.0 521 74.7
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 2.5e-223 778.9 521 74.7
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 4.3e-223 778.1 509 75.6
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 5.6e-223 777.7 468 80.1
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.1e-221 773.5 516 74.6
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 1.4e-221 773.1 522 74.1
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.4e-221 773.1 519 73.8
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 2.4e-221 772.3 512 74.4
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 6.9e-221 770.8 462 79.7
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 9.0e-221 770.4 464 79.5
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.2e-220 770.0 449 90.0
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.5e-220 769.6 522 73.6
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 1.5e-220 769.6 525 74.1
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 3.4e-220 768.5 522 73.2
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 3.4e-220 768.5 525 74.1
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 9.9e-220 766.9 463 79.7
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 1.3e-219 766.5 522 73.8
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 1.9e-218 762.7 564 69.1
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 5.4e-218 761.1 452 88.7
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 9.3e-218 760.4 511 74.0
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 6.0e-217 757.7 495 74.5
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.1e-215 753.4 545 70.6
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.9e-210 736.1 486 75.9
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 1.9e-210 736.1 467 74.5
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 1.0e-208 730.3 515 71.3
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 4.3e-207 724.9 527 71.7
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 2.1e-206 722.6 418 83.3
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 8.2e-206 720.7 467 74.7
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 5.3e-205 718.0 464 74.1
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 2.6e-204 715.7 470 73.4
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 5.0e-203 711.4 414 81.6
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.9e-202 709.5 459 76.3
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 7.1e-202 707.6 451 80.9
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 1.0e-200 703.7 465 71.2
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 8.7e-200 700.7 468 73.7
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.0e-196 689.5 463 73.9
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 1.4e-192 676.8 528 68.4
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 1.4e-189 666.8 520 65.8
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 4.5e-188 661.8 373 84.2
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 1.3e-187 660.2 786 50.0
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 1.9e-186 656.4 373 84.2
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 2.3e-184 649.4 488 67.0
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 5.1e-184 648.3 462 71.9
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 7.0e-181 637.9 453 67.3
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 1.7e-179 633.3 396 80.3
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 2.2e-174 616.3 460 69.6
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 3.7e-174 615.5 487 65.7
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 1.0e-171 607.4 488 63.5
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 4.5e-164 582.0 355 80.6
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.3e-163 580.5 418 73.7
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 2.1e-124 450.3 323 74.3
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 3.1e-120 436.4 368 64.1
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 9.3e-117 424.9 238 85.3
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 1.7e-102 377.5 292 65.1
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 1.1e-98 364.8 457 42.5
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 2.5e-98 363.6 249 74.7
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 2.2e-94 350.5 457 40.9
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 3.3e-90 336.7 201 80.6
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 6.9e-88 328.9 459 40.5
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 6.1e-84 315.8 232 69.4
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 2.6e-66 257.3 400 41.2
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 8.5e-62 242.3 131 87.8
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 1.5e-61 241.5 204 67.6
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 2.3e-59 234.2 170 68.2
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 3.8e-54 216.9 196 60.7
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 2.7e-52 210.7 165 66.7
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.5e-45 188.3 123 66.7
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 1.2e-44 185.3 132 64.4
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.8e-43 181.4 98 89.8
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 4.0e-43 180.3 249 43.0
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 8.8e-43 179.1 376 30.3
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 4.9e-41 173.3 95 88.4
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 4.9e-41 173.3 122 68.9
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.3e-33 148.7 124 57.3
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 2.2e-33 147.9 93 80.6
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 2.4e-32 144.4 80 82.5
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 5.6e-29 133.3 100 66.0
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 2.1e-28 131.3 290 30.7
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 8.0e-28 129.4 74 83.8
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 4.4e-26 123.6 100 64.0
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 3.9e-14 84.0 57 61.4
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 2.8e-12 77.8 67 56.7
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 3.6e-12 77.4 120 49.2
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 1.1e-11 75.9 47 70.2
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 2.3e-11 74.7 41 78.0
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 9.2e-08 62.8 35 77.1
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 6.0e-07 60.1 38 73.7
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 2.3e-06 58.2 34 73.5


User provided reference genes

Program Settings